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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458427 (48 seq.)
>W1711486046
MKEK01000001
Gammaproteobacteria
Rheinheimera salexigens KH87 [MKEK]
3107926
3107851
-
Phe
GAA
[ENA]
¡û
>W1711486048
MKEK01000001
Gammaproteobacteria
Rheinheimera salexigens KH87 [MKEK]
3107616
3107541
-
Phe
GAA
[ENA]
¡û
>W1711499171
MKQD01000051
Gammaproteobacteria
Thalassotalea sp. PP2-459 [MKQD]
48799
48874
+
Phe
GAA
[ENA]
¡û
>W1711767441
MUZV01000004
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
195714
195789
+
Phe
GAA
[ENA]
¡û
>W1711795592
MWPV01000001
Gammaproteobacteria
Pseudoalteromonas ulvae [MWPV]
661357
661432
+
Phe
GAA
[ENA]
¡û
>W1711795594
MWPV01000001
Gammaproteobacteria
Pseudoalteromonas ulvae [MWPV]
661603
661678
+
Phe
GAA
[ENA]
¡û
>W1711795596
MWPV01000001
Gammaproteobacteria
Pseudoalteromonas ulvae [MWPV]
661833
661908
+
Phe
GAA
[ENA]
¡û
>W1711795598
MWPV01000001
Gammaproteobacteria
Pseudoalteromonas ulvae [MWPV]
662107
662182
+
Phe
GAA
[ENA]
¡û
>W1711947421
NBOC01000002
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
192782
192707
-
Phe
GAA
[ENA]
¡û
>W1711947498
NBOD01000005
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
195746
195821
+
Phe
GAA
[ENA]
¡û
>W1711947567
NBOE01000006
Gammaproteobacteria
Colwellia polaris [NBOE]
26487
26412
-
Phe
GAA
[ENA]
¡û
>W1711947654
NBOF01000003
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
371081
371006
-
Phe
GAA
[ENA]
¡û
>W1711947687
NBOG01000001
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
244295
244370
+
Phe
GAA
[ENA]
¡û
>C171034497
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
2900322
2900247
-
Phe
GAA
-
¡û
>C171034523
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
1601458
1601533
+
Phe
GAA
-
¡û
>C171108397
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
2891687
2891612
-
Phe
GAA
-
¡û
>w014288
AAOH01000028
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [AAOH]
424
347
-
Phe
GAA
[ENA]
¡û
>w014236
AAOH01000006
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [AAOH]
84391
84468
+
Phe
GAA
[ENA]
¡û
>WENV182544573
OJBI01000008
[OJBI] seawater metagenome; Sea water
55802
55877
+
Phe
GAA
[ENA]
¢þ
>WENV182549895
OJBZ01000279
[OJBZ] seawater metagenome; Sea water
6440
6515
+
Phe
GAA
[ENA]
¢þ
>WENV182554594
OJCW01000059
[OJCW] seawater metagenome; Sea water
31478
31553
+
Phe
GAA
[ENA]
¢þ
>WENV182554919
OJCX01009184
[OJCX] seawater metagenome; Sea water
49
124
+
Phe
GAA
[ENA]
¢þ
>WENV182559996
OJDR01000122
[OJDR] seawater metagenome; Sea water
304
229
-
Phe
GAA
[ENA]
¢þ
>WENV182562228
OJDZ01000147
[OJDZ] seawater metagenome; Sea water
45369
45294
-
Phe
GAA
[ENA]
¢þ
>WENV182565110
OJEG01002144
[OJEG] seawater metagenome; Sea water
1499
1424
-
Phe
GAA
[ENA]
¢þ
>WENV182565231
OJEH01000598
[OJEH] seawater metagenome; Sea water
1362
1437
+
Phe
GAA
[ENA]
¢þ
>WENV182574717
OJFS01000756
[OJFS] seawater metagenome; Sea water
3203
3278
+
Phe
GAA
[ENA]
¢þ
>WENV182575153
OJFU01000260
[OJFU] seawater metagenome; Sea water
10581
10656
+
Phe
GAA
[ENA]
¢þ
>WENV182577403
OJGE01001150
[OJGE] seawater metagenome; Sea water
814
739
-
Phe
GAA
[ENA]
¢þ
>WENV182577859
OJGL01000478
[OJGL] seawater metagenome; Sea water
1696
1621
-
Phe
GAA
[ENA]
¢þ
>WENV182580310
OJGV01001707
[OJGV] seawater metagenome; Sea water
121
196
+
Phe
GAA
[ENA]
¢þ
>WENV183055472
OLHD01000001
[OLHD] seawater metagenome; Sea water
118804
118879
+
Phe
GAA
[ENA]
¢þ
>WENV183057644
OLHM01000133
[OLHM] seawater metagenome; Sea water
23773
23698
-
Phe
GAA
[ENA]
¢þ
>WENV183057958
OLHN01000118
[OLHN] seawater metagenome; Sea water
6438
6513
+
Phe
GAA
[ENA]
¢þ
>WENV183058299
OLHP01003522
[OLHP] seawater metagenome; Sea water
1040
1115
+
Phe
GAA
[ENA]
¢þ
>WENV170781250
MAAB01030317
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
281
206
-
Phe
GAA
[ENA]
¢þ
>WENV170782905
MAAC01012017
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3583
3508
-
Phe
GAA
[ENA]
¢þ
>WENV170783141
MAAC01014180
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
6626
6701
+
Phe
GAA
[ENA]
¢þ
>C181169939
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
3415200
3415275
+
Phe
GAA
-
¡û
>C191083303
CP031961
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP031961,CP031962]
336681
336756
+
Phe
GAA
-
¡û
>C191128396
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
1056660
1056585
-
Phe
GAA
-
¡û
>W1910796182
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
1308858
1308933
+
Phe
GAA
[ENA]
¡û
>W1910796184
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
1322886
1322961
+
Phe
GAA
[ENA]
¡û
>W1910796186
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
1323164
1323239
+
Phe
GAA
[ENA]
¡û
>W1810154340
PIZK01000021
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
124801
124876
+
Phe
GAA
[ENA]
¡û
>W1810154342
PIZK01000021
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
125057
125132
+
Phe
GAA
[ENA]
¡û
>W1810154343
PIZK01000021
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
125176
125251
+
Phe
GAA
[ENA]
¡û
>W1710545232
FOBI01000002
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
202231
202306
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK