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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45845 (38 seq.)
>W131002803
AGZL01000001
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
207858
207945
+
Ser
TGA
[ENA]
¡û
>W131002809
AGZL01000013
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
169255
169340
+
Ser
TGA
[ENA]
¡û
>W131002820
AGZL01000023
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
49052
49137
+
Ser
TGA
[ENA]
¡û
>C171067453
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
3336914
3336827
-
Ser
TGA
-
¡û
>C171067455
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
2647222
2647137
-
Ser
TGA
-
¡û
>C171067456
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
2626750
2626665
-
Ser
TGA
-
¡û
>C171067524
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
71755
71668
-
Ser
TGA
-
¡û
>W131002819
AGZL01000023
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
30679
30764
+
Ser
TGA
[ENA]
¡û
>W131236232
AUMF01000019
Bacteroidota
Tenacibaculum ovolyticum DSM 18103 [AUMF]
20870
20957
+
Ser
TGA
[ENA]
¡û
>W131236233
AUMF01000019
Bacteroidota
Tenacibaculum ovolyticum DSM 18103 [AUMF]
21133
21220
+
Ser
TGA
[ENA]
¡û
>WENV181401972
OFTY01000004
[OFTY] sludge metagenome; sludge
141392
141307
-
Ser
TGA
[ENA]
¢þ
>WENV181402031
OFTY01000046
[OFTY] sludge metagenome; sludge
93226
93141
-
Ser
TGA
[ENA]
¢þ
>C181202243
CP031557
Bacteroidota
Flavobacterium psychrotrophum CJ74 [CP031557]
2621553
2621466
-
Ser
TGA
-
¡û
>C181219842
LT634361
Bacteroidota
Tenacibaculum maritimum NCIMB 2154 [LT634361]
2199753
2199838
+
Ser
TGA
-
¡û
>C181219843
LT634361
Bacteroidota
Tenacibaculum maritimum NCIMB 2154 [LT634361]
2199974
2200059
+
Ser
TGA
-
¡û
>W1911501285
OENB01000012
Bacteroidota
Tenacibaculum dicentrarchi TNO021 [OENB]
274452
274537
+
Ser
TGA
[ENA]
¡û
>W1911501347
OENC01000056
Bacteroidota
Tenacibaculum dicentrarchi type strain: TD3509 [OENC]
293434
293519
+
Ser
TGA
[ENA]
¡û
>W1911504346
OESZ01000023
Bacteroidota
Tenacibaculum dicentrarchi TDCHD05 [OESZ]
107388
107473
+
Ser
TGA
[ENA]
¡û
>W1911504347
OESZ01000023
Bacteroidota
Tenacibaculum dicentrarchi TDCHD05 [OESZ]
107596
107681
+
Ser
TGA
[ENA]
¡û
>W1911647258
QAJI01000005
Bacteroidota
Taibaiella sp. KBW10 [QAJI]
157352
157265
-
Ser
TGA
[ENA]
¡û
>C151066970
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
3395268
3395183
-
Ser
TGA
[Ensembl]
¡û
>C151066972
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
2678940
2678855
-
Ser
TGA
[Ensembl]
¡û
>C151067038
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
153134
153047
-
Ser
TGA
[Ensembl]
¡û
>W121009099
AGEC01000011
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
14761
14676
-
Ser
TGA
[ENA]
¡û
>W121009117
AGEC01000018
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
31321
31406
+
Ser
TGA
[ENA]
¡û
>W121009118
AGEC01000020
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
35790
35877
+
Ser
TGA
[ENA]
¡û
>W121009133
AGEC01000027
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
100356
100443
+
Ser
TGA
[ENA]
¡û
>W121124120
BAEX01000037
Bacteroidota
Myroides injenensis M09-0166 [BAEX]
3423
3338
-
Ser
TGA
[ENA]
¡û
>W121124123
BAEX01000056
Bacteroidota
Myroides injenensis M09-0166 [BAEX]
2571
2656
+
Ser
TGA
[ENA]
¡û
>W121124132
BAEX01000076
Bacteroidota
Myroides injenensis M09-0166 [BAEX]
8870
8955
+
Ser
TGA
[ENA]
¡û
>W1610080940
BDCW01000035
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
23549
23636
+
Ser
TGA
[ENA]
¡û
>W1610080941
BDCW01000035
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
23810
23897
+
Ser
TGA
[ENA]
¡û
>W1710079591
BDCW01000035
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
23549
23636
+
Ser
TGA
[ENA]
¡û
>W1710079592
BDCW01000035
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
23810
23897
+
Ser
TGA
[ENA]
¡û
>W1710591208
FRBO01000004
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
84126
84211
+
Ser
TGA
[ENA]
¡û
>W1710591212
FRBO01000005
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
168142
168229
+
Ser
TGA
[ENA]
¡û
>W1710591237
FRBO01000010
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
16581
16666
+
Ser
TGA
[ENA]
¡û
>W1710591262
FRBO01000022
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
630
545
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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