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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458478 (33 seq.)
>W131053681
ANAH01000004
Myxococcota
Cystobacter fuscus DSM 2262 [ANAH]
93967
94042
+
Ala
CGC
[ENA]
¡û
>W131086603
AOBT01000001
Myxococcota
Myxococcus xanthus DZF1 [AOBT]
59762
59837
+
Ala
CGC
[ENA]
¡û
>W1711625253
MPIN01000002
Myxococcota
Cystobacter ferrugineus [MPIN]
510812
510737
-
Ala
CGC
[ENA]
¡û
>W1711628626
MPOI01000006
Myxococcota
Archangium sp. Cb G35 [MPOI]
254350
254425
+
Ala
CGC
[ENA]
¡û
>C014504
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
6624027
6624102
+
Ala
CGC
[Ensembl]
¡û
>WENV181184980
OEKZ01000580
[OEKZ] metagenome; 1998
77
4
-
Ala
CGC
[ENA]
¢þ
>WENV170558477
CXWL01072750
[CXWL] groundwater metagenome; biofilm material
912
837
-
Ala
CGC
[ENA]
¢þ
>C181057859
CP022098
Myxococcota
Cystobacter fuscus DSM 52655 [CP022098]
8898829
8898904
+
Ala
CGC
-
¡û
>C181059840
CP022163
Myxococcota
Melittangium boletus DSM 14713 [CP022163]
6649033
6648958
-
Ala
CGC
-
¡û
>C181060644
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
6526973
6527048
+
Ala
CGC
-
¡û
>C191013140
CP017169
Myxococcota
Myxococcus xanthus GH3.5.6c2 [CP017169]
6743940
6744015
+
Ala
CGC
-
¡û
>C191013205
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
6671657
6671732
+
Ala
CGC
-
¡û
>C191013271
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
6366846
6366921
+
Ala
CGC
-
¡û
>C191013336
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
6819688
6819763
+
Ala
CGC
-
¡û
>C191013401
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
6715349
6715424
+
Ala
CGC
-
¡û
>C191013466
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
6715344
6715419
+
Ala
CGC
-
¡û
>C191128696
CP034669
Myxococcota
Corallococcus coralloides B035 [CP034669]
2550159
2550084
-
Ala
CGC
-
¡û
>W141806666
JPMI01000228
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
32078
32003
-
Ala
CGC
[ENA]
¡û
>W1911701630
QNUN01000026
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
40010
40085
+
Ala
CGC
[ENA]
¡û
>W1810452225
PZOX01000016
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
29589
29514
-
Ala
CGC
[ENA]
¡û
>W1810884681
QUMU01000003
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
786582
786507
-
Ala
CGC
[ENA]
¡û
>C151008183
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
8140850
8140925
+
Ala
CGC
[Ensembl]
¡û
>C151083596
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
4344502
4344427
-
Ala
CGC
[Ensembl]
¡û
>C151091058
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
1856040
1855965
-
Ala
CGC
[Ensembl]
¡û
>C11114336
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
8474024
8474099
+
Ala
CGC
[Ensembl]
¡û
>C121012096
CP003389
Myxococcota
Corallococcus coralloides DSM 2259 [CP003389]
2709822
2709747
-
Ala
CGC
[Ensembl]
¡û
>W121102848
AKXT01000009
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
84390
84465
+
Ala
CGC
[ENA]
¡û
>W121103134
AKYI01001430
Myxococcota
Myxococcus xanthus DZ2 [AKYI]
1819
1744
-
Ala
CGC
[ENA]
¡û
>C131011671
CP004025
Myxococcota
Myxococcus stipitatus DSM 14675 [CP004025]
7587607
7587682
+
Ala
CGC
[Ensembl]
¡û
>WENV077671
AAFX01084361
Soil microbial communities from Minnesota Farm
74
149
+
Ala
CGC
[ENA]
>W1710513700
FNAJ01000004
Myxococcota
Myxococcus virescens [FNAJ]
13806
13881
+
Ala
CGC
[ENA]
¡û
>W1710529830
FNOH01000017
Myxococcota
Myxococcus xanthus [FNOH]
113059
113134
+
Ala
CGC
[ENA]
¡û
>W1710553973
FOIB01000002
Myxococcota
Myxococcus fulvus [FOIB]
57636
57711
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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