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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458551 (54 seq.)
>W1710860984
LMDH01000001
Actinomycetota
Aeromicrobium sp. Root344 [LMDH]
759444
759371
-
Thr
GGT
[ENA]
¡û
>W1710862984
LMET01000001
Actinomycetota
Aeromicrobium sp. Root472D3 [LMET]
1220672
1220745
+
Thr
GGT
[ENA]
¡û
>W1710867990
LMIS01000001
Actinomycetota
Aeromicrobium sp. Root236 [LMIS]
1702950
1702877
-
Thr
GGT
[ENA]
¡û
>W1710872669
LMMD01000015
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
67274
67201
-
Thr
GGT
[ENA]
¡û
>W1710874196
LMNK01000002
Actinomycetota
Aeromicrobium sp. Leaf289 [LMNK]
1111717
1111790
+
Thr
GGT
[ENA]
¡û
>W1710874288
LMNM01000001
Actinomycetota
Aeromicrobium sp. Leaf291 [LMNM]
1170310
1170383
+
Thr
GGT
[ENA]
¡û
>W1711004816
LQMT02000023
Actinomycetota
Amycolatopsis keratiniphila subsp. keratiniphila [LQMT]
65689
65616
-
Thr
GGT
[ENA]
¡û
>W1711125368
LUNF01000215
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
4515
4442
-
Thr
GGT
[ENA]
¡û
>W1711125410
LUNG01000061
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
29297
29224
-
Thr
GGT
[ENA]
¡û
>W1711125418
LUNH01000003
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
7443
7516
+
Thr
GGT
[ENA]
¡û
>W1711125465
LUNI01000002
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
87359
87286
-
Thr
GGT
[ENA]
¡û
>W1711125528
LUNJ01000021
Actinomycetota
Aeromicrobium sp. REDSEA-S44_B1 [LUNJ]
87280
87207
-
Thr
GGT
[ENA]
¡û
>W1711430470
MIJB01000033
Actinomycetota
Aeromicrobium sp. PE09-221 [MIJB]
5844
5919
+
Thr
GGT
[ENA]
¡û
>W1711662690
MQUP01000013
Actinomycetota
Amycolatopsis keratiniphila subsp. nogabecina [MQUP]
253745
253672
-
Thr
GGT
[ENA]
¡û
>W131091942
AOHO01000048
Actinomycetota
Amycolatopsis decaplanina DSM 44594 [AOHO]
602357
602430
+
Thr
GGT
[ENA]
¡û
>W141091641
AUZE01000018
Actinomycetota
actinobacterium LLX17 [AUZE]
552237
552164
-
Thr
GGT
[ENA]
¡û
>W141241351
CAHG01000004
Actinomycetota
Aeromicrobium massiliense JC14 [CAHG]
70738
70665
-
Thr
GGT
[ENA]
¡û
>W141451887
JFBM01000001
Actinomycetota
Amycolatopsis lurida NRRL 2430 [JFBM]
41457
41530
+
Thr
GGT
[ENA]
¡û
>WENV170729624
LULG01000029
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
32644
32571
-
Thr
GGT
[ENA]
¢þ
>WENV170732467
LULJ01000024
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
29297
29224
-
Thr
GGT
[ENA]
¢þ
>WENV170736288
LULM01000710
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
4515
4442
-
Thr
GGT
[ENA]
¢þ
>WENV170738739
LULP01002906
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
1115
1042
-
Thr
GGT
[ENA]
¢þ
>WENV170758869
LUMS01000102
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
6969
7042
+
Thr
GGT
[ENA]
¢þ
>WENV170759635
LUMT01000056
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
51693
51620
-
Thr
GGT
[ENA]
¢þ
>WENV170761322
LUMV01000019
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
87280
87207
-
Thr
GGT
[ENA]
¢þ
>WENV170762027
LUMW01000506
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
3862
3789
-
Thr
GGT
[ENA]
¢þ
>C181144029
CP026952
Actinomycetota
Aeromicrobium chenweiae 592 [CP026952]
3115962
3115889
-
Thr
GGT
-
¡û
>W141806112
JPLW01000001
Actinomycetota
Amycolatopsis sp. MJM2582 [JPLW]
617269
617196
-
Thr
GGT
[ENA]
¡û
>W1911071516
NMQT01000007
Actinomycetota
Amycolatopsis thailandensis JCM 16380 [NMQT]
39951
40024
+
Thr
GGT
[ENA]
¡û
>W1911678690
QHJI01000008
Actinomycetota
Amycolatopsis sp. WAC 04169 [QHJI]
71116
71189
+
Thr
GGT
[ENA]
¡û
>W1911678779
QHJK01000001
Actinomycetota
Amycolatopsis sp. WAC 04197 [QHJK]
802296
802369
+
Thr
GGT
[ENA]
¡û
>W1911678912
QHJM01000009
Actinomycetota
Streptomyces sp. WAC 05977 [QHJM]
198832
198905
+
Thr
GGT
[ENA]
¡û
>W1911693716
QLVF01000617
Actinomycetota
Aeromicrobium lacus CPCC 204604 [QLVF]
146
219
+
Thr
GGT
[ENA]
¡û
>W1810675444
QKKY01000617
Actinomycetota
Aeromicrobium sp. IBM16_104W [QKKY]
146
219
+
Thr
GGT
[ENA]
¡û
>W1810870293
QUBR01000001
Actinomycetota
Aeromicrobium endophyticum M2KJ-4 [QUBR]
391679
391606
-
Thr
GGT
[ENA]
¡û
>C151018951
CP007219
Actinomycetota
Amycolatopsis lurida [CP007219]
41457
41530
+
Thr
GGT
-
¡û
>C151040862
CP008953
Actinomycetota
Amycolatopsis japonica MG417-CF17 [CP008953]
7811665
7811592
-
Thr
GGT
[Ensembl]
¡û
>W11187352
CAEF01000082
Actinomycetota
Aeromicrobium massiliense JC14 [CAEF]
249
322
+
Thr
GGT
[ENA]
¡û
>C161036376
CP011502
Actinomycetota
Aeromicrobium erythreum AR18 [CP011502]
709377
709450
+
Thr
GGT
[Ensembl]
¡û
>C131003612
CP003410
Actinomycetota
Amycolatopsis keratiniphila HCCB10007 [CP003410]
632198
632271
+
Thr
GGT
[Ensembl]
¡û
>W1610723330
LMDH01000001
Actinomycetota
Aeromicrobium sp. Root344 [LMDH]
759444
759371
-
Thr
GGT
[ENA]
¡û
>W1610725330
LMET01000001
Actinomycetota
Aeromicrobium sp. Root472D3 [LMET]
1220672
1220745
+
Thr
GGT
[ENA]
¡û
>W1610730336
LMIS01000001
Actinomycetota
Aeromicrobium sp. Root236 [LMIS]
1702950
1702877
-
Thr
GGT
[ENA]
¡û
>W1610735015
LMMD01000015
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
67274
67201
-
Thr
GGT
[ENA]
¡û
>W1610736542
LMNK01000002
Actinomycetota
Aeromicrobium sp. Leaf289 [LMNK]
1111717
1111790
+
Thr
GGT
[ENA]
¡û
>W1610736634
LMNM01000001
Actinomycetota
Aeromicrobium sp. Leaf291 [LMNM]
1170310
1170383
+
Thr
GGT
[ENA]
¡û
>W1610855425
LQMT01000164
Actinomycetota
Amycolatopsis keratiniphila subsp. keratiniphila [LQMT]
14183
14256
+
Thr
GGT
[ENA]
¡û
>W1610936301
LUNF01000215
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
4515
4442
-
Thr
GGT
[ENA]
¡û
>W1610936343
LUNG01000061
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
29297
29224
-
Thr
GGT
[ENA]
¡û
>W1610936351
LUNH01000003
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
7443
7516
+
Thr
GGT
[ENA]
¡û
>W1610936398
LUNI01000002
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
87359
87286
-
Thr
GGT
[ENA]
¡û
>W1610936461
LUNJ01000021
Actinomycetota
Aeromicrobium sp. REDSEA-S44_B1 [LUNJ]
87280
87207
-
Thr
GGT
[ENA]
¡û
>W1710536187
FNTA01000004
Actinomycetota
Amycolatopsis lurida [FNTA]
3353672
3353599
-
Thr
GGT
[ENA]
¡û
>W1710773689
LIWC01000004
Actinomycetota
Amycolatopsis sp. CB00013 [LIWC]
138927
139000
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK