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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458770 (114 seq.)
>W1711329395
MBLV01000006
Gammaproteobacteria
Edwardsiella tarda [MBLV]
1255
1180
-
Thr
GGT
[ENA]
¡û
>W1711627931
MPNU01000001
Gammaproteobacteria
Edwardsiella piscicida [MPNU]
253207
253282
+
Thr
GGT
[ENA]
¡û
>W1711628009
MPNU01000001
Gammaproteobacteria
Edwardsiella piscicida [MPNU]
49010
48935
-
Thr
GGT
[ENA]
¡û
>W1711707844
MSSL01000034
Gammaproteobacteria
Edwardsiella tarda [MSSL]
20408
20333
-
Thr
GGT
[ENA]
¡û
>W1711707852
MSSL01000064
Gammaproteobacteria
Edwardsiella tarda [MSSL]
259
334
+
Thr
GGT
[ENA]
¡û
>W1711751111
MUNJ01000036
Gammaproteobacteria
Plesiomonas shigelloides [MUNJ]
326
251
-
Thr
GGT
[ENA]
¡û
>W1711751117
MUNJ01000051
Gammaproteobacteria
Plesiomonas shigelloides [MUNJ]
387
312
-
Thr
GGT
[ENA]
¡û
>C171045316
CP016043
Gammaproteobacteria
Edwardsiella hoshinae ATCC 35051 [CP016043]
3759430
3759355
-
Thr
GGT
-
¡û
>C171045329
CP016043
Gammaproteobacteria
Edwardsiella hoshinae ATCC 35051 [CP016043]
3581267
3581192
-
Thr
GGT
-
¡û
>C171045363
CP016044
Gammaproteobacteria
Edwardsiella piscicida S11-285 [CP016044]
157672
157747
+
Thr
GGT
-
¡û
>C171045394
CP016044
Gammaproteobacteria
Edwardsiella piscicida S11-285 [CP016044]
3870327
3870252
-
Thr
GGT
-
¡û
>C171045395
CP016044
Gammaproteobacteria
Edwardsiella piscicida S11-285 [CP016044]
3870087
3870012
-
Thr
GGT
-
¡û
>C171108435
CP020466
Gammaproteobacteria
Edwardsiella ictaluri RUSVM-1 [CP020466]
2559363
2559438
+
Thr
GGT
-
¡û
>C171108465
CP020466
Gammaproteobacteria
Edwardsiella ictaluri RUSVM-1 [CP020466]
2343556
2343481
-
Thr
GGT
-
¡û
>W131157160
AQQO01000364
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
203
128
-
Thr
GGT
[ENA]
¡û
>W131157161
AQQO01000379
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
300
225
-
Thr
GGT
[ENA]
¡û
>W131239673
BANW01000025
Gammaproteobacteria
Edwardsiella tarda NBRC 105688 [BANW]
12
87
+
Thr
GGT
[ENA]
¡û
>W131239678
BANW01000031
Gammaproteobacteria
Edwardsiella tarda NBRC 105688 [BANW]
4010
4085
+
Thr
GGT
[ENA]
¡û
>W141235868
BAYT01000029
Gammaproteobacteria
Edwardsiella piscicida [BAYT]
48849
48774
-
Thr
GGT
[ENA]
¡û
>W141235879
BAYT01000054
Gammaproteobacteria
Edwardsiella piscicida [BAYT]
248
173
-
Thr
GGT
[ENA]
¡û
>W141235949
BAYU01000018
Gammaproteobacteria
Edwardsiella piscicida [BAYU]
48940
48865
-
Thr
GGT
[ENA]
¡û
>W141235957
BAYU01000030
Gammaproteobacteria
Edwardsiella piscicida [BAYU]
3948
4023
+
Thr
GGT
[ENA]
¡û
>WENV170658508
JTFP01128603
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
116
191
+
Thr
GGT
[ENA]
¢þ
>WENV170776663
LXOW01194586
[LXOW] bovine gut metagenome; Cow rumen
68
143
+
Thr
GGT
[ENA]
¢þ
>WENV170776664
LXOW01194586
[LXOW] bovine gut metagenome; Cow rumen
257
332
+
Thr
GGT
[ENA]
¢þ
>C181089196
CP023706
Gammaproteobacteria
Edwardsiella tarda KC-Pc-HB1 [CP023706]
1689920
1689845
-
Thr
GGT
-
¡û
>C181089209
CP023706
Gammaproteobacteria
Edwardsiella tarda KC-Pc-HB1 [CP023706]
1511413
1511338
-
Thr
GGT
-
¡û
>C181160538
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
2497557
2497632
+
Thr
GGT
-
¡û
>C181160546
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
2711350
2711425
+
Thr
GGT
-
¡û
>C181168552
CP028813
Gammaproteobacteria
Edwardsiella ictaluri MS-17-156 [CP028813]
1734151
1734226
+
Thr
GGT
-
¡û
>C181168603
CP028813
Gammaproteobacteria
Edwardsiella ictaluri MS-17-156 [CP028813]
1519297
1519222
-
Thr
GGT
-
¡û
>C181203263
LC127084
Gammaproteobacteria
Edwardsiella tarda ET-1 [LC127084]
3329042
3329117
+
Thr
GGT
-
¡û
>C181203279
LC127084
Gammaproteobacteria
Edwardsiella tarda ET-1 [LC127084]
3095929
3095854
-
Thr
GGT
-
¡û
>C191145268
CP035668
Gammaproteobacteria
Edwardsiella piscicida MS-18-199 [CP035668]
1654314
1654389
+
Thr
GGT
-
¡û
>C191145322
CP035668
Gammaproteobacteria
Edwardsiella piscicida MS-18-199 [CP035668]
1442110
1442035
-
Thr
GGT
-
¡û
>W141732546
JNKD01000091
Gammaproteobacteria
Ruminobacter sp. RM87 [JNKD]
326
401
+
Thr
GGT
[ENA]
¡û
>W141732547
JNKD01000091
Gammaproteobacteria
Ruminobacter sp. RM87 [JNKD]
515
590
+
Thr
GGT
[ENA]
¡û
>W1910563512
JACQ01000060
Gammaproteobacteria
Edwardsiella tarda PPD130/91 [JACQ]
275
200
-
Thr
GGT
[ENA]
¡û
>C09105982
CP001600
Gammaproteobacteria
Edwardsiella ictaluri 93-146 [CP001600]
163499
163574
+
Thr
GGT
[Ensembl]
¡û
>C09106012
CP001600
Gammaproteobacteria
Edwardsiella ictaluri 93-146 [CP001600]
3759635
3759560
-
Thr
GGT
[Ensembl]
¡û
>W1911070049
NMPN01000075
Gammaproteobacteria
Edwardsiella anguillarum 11113 [NMPN]
653
728
+
Thr
GGT
[ENA]
¡û
>W1911070058
NMPN01000095
Gammaproteobacteria
Edwardsiella anguillarum 11113 [NMPN]
4342
4417
+
Thr
GGT
[ENA]
¡û
>W1911572986
PDDV01000013
Gammaproteobacteria
Edwardsiella tarda FDAARGOS_370 [PDDV]
358337
358262
-
Thr
GGT
[ENA]
¡û
>W1911572999
PDDV01000013
Gammaproteobacteria
Edwardsiella tarda FDAARGOS_370 [PDDV]
179072
178997
-
Thr
GGT
[ENA]
¡û
>W1911653449
QDAC01000015
Gammaproteobacteria
Edwardsiella tarda ATCC 15947 = NBRC 105688 [QDAC]
49070
48995
-
Thr
GGT
[ENA]
¡û
>W1911653453
QDAC01000016
Gammaproteobacteria
Edwardsiella tarda ATCC 15947 = NBRC 105688 [QDAC]
23901
23826
-
Thr
GGT
[ENA]
¡û
>W1810015073
BGMJ01000065
Gammaproteobacteria
Edwardsiella piscicida JF1307 [BGMJ]
269
194
-
Thr
GGT
[ENA]
¡û
>W1810015117
BGMK01000028
Gammaproteobacteria
Edwardsiella piscicida JF1411 [BGMK]
5452
5527
+
Thr
GGT
[ENA]
¡û
>W1810423102
PYSI01000049
Gammaproteobacteria
Plesiomonas shigelloides FM82 [PYSI]
3728
3803
+
Thr
GGT
[ENA]
¡û
>W1810504659
QBLD01000018
Gammaproteobacteria
Edwardsiella ictaluri S97-773 [QBLD]
64
139
+
Thr
GGT
[ENA]
¡û
>W1810504669
QBLD01000028
Gammaproteobacteria
Edwardsiella ictaluri S97-773 [QBLD]
24510
24435
-
Thr
GGT
[ENA]
¡û
>W1810533524
QCZP01000007
Gammaproteobacteria
Edwardsiella piscicida LADL97-168 [QCZP]
4420
4495
+
Thr
GGT
[ENA]
¡û
>W1810533607
QCZQ01000012
Gammaproteobacteria
Edwardsiella piscicida LADL99-462 [QCZQ]
4259
4334
+
Thr
GGT
[ENA]
¡û
>W1810533688
QCZR01000007
Gammaproteobacteria
Edwardsiella piscicida MA97-004 [QCZR]
48842
48767
-
Thr
GGT
[ENA]
¡û
>W1810533692
QCZR01000008
Gammaproteobacteria
Edwardsiella piscicida MA97-004 [QCZR]
4087
4162
+
Thr
GGT
[ENA]
¡û
>W1810533772
QCZS01000006
Gammaproteobacteria
Edwardsiella piscicida S07-262 [QCZS]
48843
48768
-
Thr
GGT
[ENA]
¡û
>W1810533776
QCZS01000007
Gammaproteobacteria
Edwardsiella piscicida S07-262 [QCZS]
4088
4163
+
Thr
GGT
[ENA]
¡û
>W1810533856
QCZT01000009
Gammaproteobacteria
Edwardsiella piscicida S07-275 [QCZT]
4043
4118
+
Thr
GGT
[ENA]
¡û
>W1810533935
QCZU01000011
Gammaproteobacteria
Edwardsiella piscicida S07-346 [QCZU]
48858
48783
-
Thr
GGT
[ENA]
¡û
>W1810533939
QCZU01000013
Gammaproteobacteria
Edwardsiella piscicida S07-346 [QCZU]
4704
4779
+
Thr
GGT
[ENA]
¡û
>W1810534023
QCZV01000008
Gammaproteobacteria
Edwardsiella piscicida S07-348 [QCZV]
23
98
+
Thr
GGT
[ENA]
¡û
>W1810534027
QCZV01000009
Gammaproteobacteria
Edwardsiella piscicida S07-348 [QCZV]
4088
4163
+
Thr
GGT
[ENA]
¡û
>W1810534104
QCZW01000015
Gammaproteobacteria
Edwardsiella piscicida S07-534 [QCZW]
48866
48791
-
Thr
GGT
[ENA]
¡û
>W1810534110
QCZW01000026
Gammaproteobacteria
Edwardsiella piscicida S07-534 [QCZW]
269
194
-
Thr
GGT
[ENA]
¡û
>W1810534190
QCZX01000015
Gammaproteobacteria
Edwardsiella piscicida S07-1019 [QCZX]
49035
48960
-
Thr
GGT
[ENA]
¡û
>W1810534197
QCZX01000020
Gammaproteobacteria
Edwardsiella piscicida S07-1019 [QCZX]
4258
4333
+
Thr
GGT
[ENA]
¡û
>W1810534279
QCZY01000012
Gammaproteobacteria
Edwardsiella tarda AL98-87 [QCZY]
4016
4091
+
Thr
GGT
[ENA]
¡û
>W1810534357
QCZZ01000009
Gammaproteobacteria
Edwardsiella tarda LADL88-209 [QCZZ]
50792
50717
-
Thr
GGT
[ENA]
¡û
>W1810534361
QCZZ01000010
Gammaproteobacteria
Edwardsiella tarda LADL88-209 [QCZZ]
23928
23853
-
Thr
GGT
[ENA]
¡û
>W1810534440
QDAA01000011
Gammaproteobacteria
Edwardsiella tarda LADL99-302 [QDAA]
24
99
+
Thr
GGT
[ENA]
¡û
>W1810534444
QDAA01000012
Gammaproteobacteria
Edwardsiella tarda LADL99-302 [QDAA]
23901
23826
-
Thr
GGT
[ENA]
¡û
>W1810534521
QDAB01000013
Gammaproteobacteria
Edwardsiella tarda RE-04 [QDAB]
23
98
+
Thr
GGT
[ENA]
¡û
>W1810534527
QDAB01000016
Gammaproteobacteria
Edwardsiella tarda RE-04 [QDAB]
23899
23824
-
Thr
GGT
[ENA]
¡û
>W1810534585
QDAD01000026
Gammaproteobacteria
Edwardsiella ictaluri S07-698 [QDAD]
40827
40752
-
Thr
GGT
[ENA]
¡û
>W1810534599
QDAD01000060
Gammaproteobacteria
Edwardsiella ictaluri S07-698 [QDAD]
239
164
-
Thr
GGT
[ENA]
¡û
>C151010404
CP006664
Gammaproteobacteria
Edwardsiella anguillarum ET080813 [CP006664]
1930787
1930862
+
Thr
GGT
[Ensembl]
¡û
>C151010452
CP006664
Gammaproteobacteria
Edwardsiella anguillarum ET080813 [CP006664]
1716582
1716507
-
Thr
GGT
[Ensembl]
¡û
>C151081299
CP011359
Gammaproteobacteria
Edwardsiella tarda FL95-01 [CP011359]
3544855
3544780
-
Thr
GGT
[Ensembl]
¡û
>C151081312
CP011359
Gammaproteobacteria
Edwardsiella tarda FL95-01 [CP011359]
3366340
3366265
-
Thr
GGT
[Ensembl]
¡û
>C151081346
CP011364
Gammaproteobacteria
Edwardsiella sp. EA181011 [CP011364]
664406
664481
+
Thr
GGT
[Ensembl]
¡û
>C151081422
CP011364
Gammaproteobacteria
Edwardsiella sp. EA181011 [CP011364]
438343
438268
-
Thr
GGT
[Ensembl]
¡û
>C151083813
CP011516
Gammaproteobacteria
Edwardsiella sp. LADL05-105 [CP011516]
161591
161666
+
Thr
GGT
[Ensembl]
¡û
>C151083842
CP011516
Gammaproteobacteria
Edwardsiella sp. LADL05-105 [CP011516]
4089619
4089544
-
Thr
GGT
[Ensembl]
¡û
>W10113601
ADGK01000003
Gammaproteobacteria
Edwardsiella tarda ATCC 23685 [ADGK]
467
392
-
Thr
GGT
[ENA]
¡û
>C10106657
CP001135
Gammaproteobacteria
Edwardsiella tarda EIB202 [CP001135]
179828
179903
+
Thr
GGT
[Ensembl]
¡û
>C10106684
CP001135
Gammaproteobacteria
Edwardsiella tarda EIB202 [CP001135]
3707272
3707197
-
Thr
GGT
[Ensembl]
¡û
>C10106752
CP002154
Gammaproteobacteria
Edwardsiella tarda FL6-60 [CP002154]
158922
158997
+
Thr
GGT
[Ensembl]
¡û
>C10106779
CP002154
Gammaproteobacteria
Edwardsiella tarda FL6-60 [CP002154]
3631416
3631341
-
Thr
GGT
[Ensembl]
¡û
>W1510756024
JABS01000072
Gammaproteobacteria
Edwardsiella anguillarum ET080729 [JABS]
3975
4050
+
Thr
GGT
[ENA]
¡û
>W1510756403
JABY01000079
Gammaproteobacteria
Edwardsiella anguillarum ET070829 [JABY]
257
182
-
Thr
GGT
[ENA]
¡û
>W1510756821
JACP01000069
Gammaproteobacteria
Edwardsiella anguillarum ET081126R [JACP]
255
180
-
Thr
GGT
[ENA]
¡û
>W11116937
ADGK01000003
Gammaproteobacteria
Edwardsiella tarda ATCC 23685 [ADGK]
467
392
-
Thr
GGT
[ENA]
¡û
>W1511345727
JRGQ01000022
Gammaproteobacteria
Edwardsiella tarda ET883 [JRGQ]
49048
48973
-
Thr
GGT
[ENA]
¡û
>W1511345743
JRGQ01000110
Gammaproteobacteria
Edwardsiella tarda ET883 [JRGQ]
248
173
-
Thr
GGT
[ENA]
¡û
>W1511347979
JRKB01000082
Gammaproteobacteria
Plesiomonas sp. ZOR0011 [JRKB]
3762
3835
+
Thr
GGT
[ENA]
¡û
>W1511425524
JUBF01000022
Gammaproteobacteria
Edwardsiella sp. EA181011 [JUBF]
372
447
+
Thr
GGT
[ENA]
¡û
>W1511425570
JUBF01000118
Gammaproteobacteria
Edwardsiella sp. EA181011 [JUBF]
4181
4256
+
Thr
GGT
[ENA]
¡û
>W1511478912
JWHQ01000054
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
3745
3820
+
Thr
GGT
[ENA]
¡û
>W1511644045
LDWX01000096
Gammaproteobacteria
Edwardsiella ictaluri LADL11-100 [LDWX]
4915
4840
-
Thr
GGT
[ENA]
¡û
>W1511644048
LDWX01000100
Gammaproteobacteria
Edwardsiella ictaluri LADL11-100 [LDWX]
220
145
-
Thr
GGT
[ENA]
¡û
>W1511646127
LEAL01000097
Gammaproteobacteria
Edwardsiella ictaluri LADL11-194 [LEAL]
4870
4795
-
Thr
GGT
[ENA]
¡û
>W1511646130
LEAL01000100
Gammaproteobacteria
Edwardsiella ictaluri LADL11-194 [LEAL]
238
163
-
Thr
GGT
[ENA]
¡û
>W1511688973
LFWL01000073
Gammaproteobacteria
Vibrio alginolyticus RM-24-2 [LFWL]
281
356
+
Thr
GGT
[ENA]
¡û
>C161109378
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
3069988
3069913
-
Thr
GGT
[Ensembl]
¡û
>W121003971
AFJH01000004
Gammaproteobacteria
Edwardsiella anguillarum 80813 [AFJH]
233
158
-
Thr
GGT
[ENA]
¡û
>W121004027
AFJH01000082
Gammaproteobacteria
Edwardsiella anguillarum 80813 [AFJH]
14
89
+
Thr
GGT
[ENA]
¡û
>W121004041
AFJI01000022
Gammaproteobacteria
Edwardsiella ictaluri ATCC 33202 [AFJI]
4233
4308
+
Thr
GGT
[ENA]
¡û
>W121004042
AFJI01000024
Gammaproteobacteria
Edwardsiella ictaluri ATCC 33202 [AFJI]
18
93
+
Thr
GGT
[ENA]
¡û
>W121004117
AFJJ01000040
Gammaproteobacteria
Edwardsiella tarda DT [AFJJ]
230
155
-
Thr
GGT
[ENA]
¡û
>W121004128
AFJJ01000051
Gammaproteobacteria
Edwardsiella tarda DT [AFJJ]
12
87
+
Thr
GGT
[ENA]
¡û
>C131013104
CP004141
Gammaproteobacteria
Edwardsiella piscicida C07-087 [CP004141]
157661
157736
+
Thr
GGT
[Ensembl]
¡û
>C131013132
CP004141
Gammaproteobacteria
Edwardsiella piscicida C07-087 [CP004141]
3803770
3803695
-
Thr
GGT
[Ensembl]
¡û
>W1611065003
MBLV01000006
Gammaproteobacteria
Edwardsiella tarda [MBLV]
1255
1180
-
Thr
GGT
[ENA]
¡û
>W1710573154
FOXF01000017
Gammaproteobacteria
Ruminobacter amylophilus [FOXF]
185
260
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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