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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458772 (78 seq.)
>W1711095584
LTGY01000099
Betaproteobacteria
Achromobacter xylosoxidans HMSC070F04 [LTGY]
191200
191275
+
Gly
GCC
[ENA]
¡û
>W1711148501
LVKN01000070
Betaproteobacteria
Achromobacter ruhlandii [LVKN]
79874
79949
+
Gly
GCC
[ENA]
¡û
>W1711187799
LWPU01000455
Betaproteobacteria
Achromobacter xylosoxidans HMSC18C08 [LWPU]
46426
46351
-
Gly
GCC
[ENA]
¡û
>W1711187809
LWPU01000689
Betaproteobacteria
Achromobacter xylosoxidans HMSC18C08 [LWPU]
1778
1703
-
Gly
GCC
[ENA]
¡û
>W1711466670
MJMO01000005
Betaproteobacteria
Achromobacter xylosoxidans [MJMO]
30706
30631
-
Gly
GCC
[ENA]
¡û
>W1711745967
MUJQ01000005
Betaproteobacteria
Burkholderia cenocepacia [MUJQ]
650299
650374
+
Gly
GCC
[ENA]
¡û
>W1711746032
MUJR01000002
Betaproteobacteria
Burkholderia cenocepacia [MUJR]
2453
2528
+
Gly
GCC
[ENA]
¡û
>W1711746036
MUJR01000004
Betaproteobacteria
Burkholderia cenocepacia [MUJR]
7813
7888
+
Gly
GCC
[ENA]
¡û
>W1711746054
MUJR01000008
Betaproteobacteria
Burkholderia cenocepacia [MUJR]
546954
547029
+
Gly
GCC
[ENA]
¡û
>W1711746060
MUJR01000009
Betaproteobacteria
Burkholderia cenocepacia [MUJR]
1393
1468
+
Gly
GCC
[ENA]
¡û
>W1711746133
MUJS01000005
Betaproteobacteria
Burkholderia cenocepacia [MUJS]
971035
971110
+
Gly
GCC
[ENA]
¡û
>W1711762403
MUVJ01000088
Betaproteobacteria
Burkholderia cenocepacia [MUVJ]
6546
6471
-
Gly
GCC
[ENA]
¡û
>W1711762435
MUVK01000001
Betaproteobacteria
Burkholderia cenocepacia [MUVK]
45505
45580
+
Gly
GCC
[ENA]
¡û
>W1711762512
MUVL01000015
Betaproteobacteria
Burkholderia cenocepacia [MUVL]
5459
5384
-
Gly
GCC
[ENA]
¡û
>W1711762591
MUVM01000094
Betaproteobacteria
Burkholderia cenocepacia [MUVM]
2480
2555
+
Gly
GCC
[ENA]
¡û
>W1711763562
MUWB01000124
Betaproteobacteria
Burkholderia cenocepacia [MUWB]
79543
79618
+
Gly
GCC
[ENA]
¡û
>W1711763629
MUWC01000114
Betaproteobacteria
Burkholderia cenocepacia [MUWC]
79543
79618
+
Gly
GCC
[ENA]
¡û
>W1711763665
MUWD01000018
Betaproteobacteria
Burkholderia cenocepacia [MUWD]
78378
78453
+
Gly
GCC
[ENA]
¡û
>W1711763766
MUWE01000136
Betaproteobacteria
Burkholderia cenocepacia [MUWE]
5448
5373
-
Gly
GCC
[ENA]
¡û
>W1711763778
MUWF01000001
Betaproteobacteria
Burkholderia cenocepacia [MUWF]
5535
5460
-
Gly
GCC
[ENA]
¡û
>W1711763880
MUWG01000162
Betaproteobacteria
Burkholderia cenocepacia [MUWG]
5757
5682
-
Gly
GCC
[ENA]
¡û
>W1711763907
MUWH01000016
Betaproteobacteria
Burkholderia cenocepacia [MUWH]
78378
78453
+
Gly
GCC
[ENA]
¡û
>W1711763996
MUWI01000128
Betaproteobacteria
Burkholderia cenocepacia [MUWI]
46252
46327
+
Gly
GCC
[ENA]
¡û
>W1711764063
MUWJ01000144
Betaproteobacteria
Burkholderia cenocepacia [MUWJ]
79395
79470
+
Gly
GCC
[ENA]
¡û
>W1711764133
MUWK01000107
Betaproteobacteria
Burkholderia cenocepacia [MUWK]
78986
79061
+
Gly
GCC
[ENA]
¡û
>W1711764173
MUWL01000045
Betaproteobacteria
Burkholderia cenocepacia [MUWL]
5465
5390
-
Gly
GCC
[ENA]
¡û
>W1711764258
MUWM01000136
Betaproteobacteria
Burkholderia cenocepacia [MUWM]
78723
78798
+
Gly
GCC
[ENA]
¡û
>W1711764318
MUWN01000118
Betaproteobacteria
Burkholderia cenocepacia [MUWN]
78526
78601
+
Gly
GCC
[ENA]
¡û
>W1711764345
MUWO01000046
Betaproteobacteria
Burkholderia cenocepacia [MUWO]
5757
5682
-
Gly
GCC
[ENA]
¡û
>W1711764450
MUWP01000152
Betaproteobacteria
Burkholderia cenocepacia [MUWP]
3658
3733
+
Gly
GCC
[ENA]
¡û
>W1711764460
MUWQ01000014
Betaproteobacteria
Burkholderia cenocepacia [MUWQ]
2480
2555
+
Gly
GCC
[ENA]
¡û
>W1711764555
MUWR01000146
Betaproteobacteria
Burkholderia cenocepacia [MUWR]
5481
5406
-
Gly
GCC
[ENA]
¡û
>W1711764612
MUWS01000135
Betaproteobacteria
Burkholderia cenocepacia [MUWS]
45956
46031
+
Gly
GCC
[ENA]
¡û
>W1711764680
MUWT01000158
Betaproteobacteria
Burkholderia cenocepacia [MUWT]
78986
79061
+
Gly
GCC
[ENA]
¡û
>W1711764710
MUWU01000049
Betaproteobacteria
Burkholderia cenocepacia [MUWU]
78378
78453
+
Gly
GCC
[ENA]
¡û
>W1711764797
MUWV01000139
Betaproteobacteria
Burkholderia cenocepacia [MUWV]
78526
78601
+
Gly
GCC
[ENA]
¡û
>W1711764865
MUWW01000157
Betaproteobacteria
Burkholderia cenocepacia [MUWW]
46252
46327
+
Gly
GCC
[ENA]
¡û
>W1712110466
NJIG01000002
Betaproteobacteria
Achromobacter marplatensis [NJIG]
280667
280592
-
Gly
GCC
[ENA]
¡û
>WENV181000195
ODVU01000011
[ODVU] human metagenome; G_DNA_Anterior nares
6017
6092
+
Gly
GCC
[ENA]
¢þ
>WENV181130965
OEFZ01000017
[OEFZ] human metagenome; G_DNA_Anterior nares
41168
41093
-
Gly
GCC
[ENA]
¢þ
>WENV181293682
OFHG01015530
[OFHG] soil metagenome; Clay
821
746
-
Gly
GCC
[ENA]
¢þ
>WENV181367978
OFQD01012263
[OFQD] freshwater metagenome; Freshwater Lake
196
271
+
Gly
GCC
[ENA]
¢þ
>WENV181368891
OFQN01002715
[OFQN] freshwater metagenome; Freshwater Lake
624
699
+
Gly
GCC
[ENA]
¢þ
>WENV181548004
OGIJ01004209
[OGIJ] metagenome; Human gut stool
846
771
-
Gly
GCC
[ENA]
¢þ
>WENV181776939
OGRG01014482
[OGRG] human gut metagenome; faeces
1232
1307
+
Gly
GCC
[ENA]
¢þ
>WENV182641356
OJLG01001077
[OJLG] metagenome; surface
1044
1119
+
Gly
GCC
[ENA]
¢þ
>WENV170707863
LNAP01037215
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
530
605
+
Gly
GCC
[ENA]
¢þ
>W1911767622
QXFC01000028
Betaproteobacteria
Burkholderia pseudomallei 3001161896 [QXFC]
13926
13851
-
Gly
GCC
[ENA]
¡û
>W1911767737
QXFE01000051
Betaproteobacteria
Burkholderia pseudomallei 3001161891 [QXFE]
13979
13904
-
Gly
GCC
[ENA]
¡û
>W1810352909
PVGD01000080
Betaproteobacteria
Burkholderia multivorans AU19518 [PVGD]
76082
76157
+
Gly
GCC
[ENA]
¡û
>W1810353051
PVGG01000054
Betaproteobacteria
Burkholderia cenocepacia AU19684 [PVGG]
5009
4934
-
Gly
GCC
[ENA]
¡û
>W1810720786
QNRM01000002
Betaproteobacteria
Achromobacter marplatensis CECT 7342 [QNRM]
280378
280303
-
Gly
GCC
[ENA]
¡û
>C151034680
CP007787
Betaproteobacteria
Burkholderia cepacia DDS 7H-2 [CP007785, CP007786, CP007787]
769700
769625
-
Gly
GCC
[Ensembl]
¡û
>W10115862
ADMS01000040
Betaproteobacteria
Achromobacter piechaudii ATCC 43553 [ADMS]
25245
25170
-
Gly
GCC
[ENA]
¡û
>W1511299389
JPGE01000004
Betaproteobacteria
Burkholderia cepacia DWS 16B-4 [JPGE]
598167
598092
-
Gly
GCC
[ENA]
¡û
>W11120359
ADMS01000040
Betaproteobacteria
Achromobacter piechaudii ATCC 43553 [ADMS]
25245
25170
-
Gly
GCC
[ENA]
¡û
>W1511591808
LBHW01000004
Betaproteobacteria
Achromobacter sp. LC458 [LBHW]
96197
96272
+
Gly
GCC
[ENA]
¡û
>C161037851
CP011917
Betaproteobacteria
Burkholderia cenocepacia ST32 [CP011917, CP011918, CP011919]
3289099
3289174
+
Gly
GCC
-
¡û
>C161066262
CP014065
Betaproteobacteria
Achromobacter xylosoxidans FDAARGOS_162 [CP014065]
139324
139399
+
Gly
GCC
-
¡û
>C161078304
CP014844
Betaproteobacteria
Cupriavidus nantongensis X1 [CP014844, CP014845]
2965928
2965853
-
Gly
GCC
[Ensembl]
¡û
>W1610047253
BBDD01000031
Betaproteobacteria
Achromobacter sp. JCM 18799 [BBDD]
12705
12630
-
Gly
GCC
[ENA]
¡û
>W1610093641
CYTD01000005
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608616 [CYTD]
211500
211575
+
Gly
GCC
[ENA]
¡û
>W1610093762
CYTF01000017
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608624 [CYTF]
93189
93264
+
Gly
GCC
[ENA]
¡û
>W1610093788
CYTG01000002
Betaproteobacteria
Achromobacter ruhlandii 2789STDY5608608 [CYTG]
208142
208217
+
Gly
GCC
[ENA]
¡û
>W1610093930
CYTI01000025
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608606 [CYTI]
61906
61981
+
Gly
GCC
[ENA]
¡û
>W1610094111
CYTM01000008
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608620 [CYTM]
93188
93263
+
Gly
GCC
[ENA]
¡û
>W1610094147
CYTN01000001
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608622 [CYTN]
528031
527956
-
Gly
GCC
[ENA]
¡û
>W1610094628
CYTX01000001
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663443 [CYTX]
360941
360866
-
Gly
GCC
[ENA]
¡û
>C131019684
HE798385
Betaproteobacteria
Achromobacter xylosoxidans NH44784-1996 [HE798385]
1063930
1064005
+
Gly
GCC
-
¡û
>W1610959232
LVKN01000070
Betaproteobacteria
Achromobacter ruhlandii [LVKN]
79874
79949
+
Gly
GCC
[ENA]
¡û
>W1710043858
BBDD01000031
Betaproteobacteria
Achromobacter sp. JCM 18799 [BBDD]
12705
12630
-
Gly
GCC
[ENA]
¡û
>W1710096684
CYTD01000005
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608616 [CYTD]
211500
211575
+
Gly
GCC
[ENA]
¡û
>W1710096805
CYTF01000017
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608624 [CYTF]
93189
93264
+
Gly
GCC
[ENA]
¡û
>W1710096831
CYTG01000002
Betaproteobacteria
Achromobacter ruhlandii 2789STDY5608608 [CYTG]
208142
208217
+
Gly
GCC
[ENA]
¡û
>W1710096973
CYTI01000025
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608606 [CYTI]
61906
61981
+
Gly
GCC
[ENA]
¡û
>W1710097154
CYTM01000008
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608620 [CYTM]
93188
93263
+
Gly
GCC
[ENA]
¡û
>W1710097190
CYTN01000001
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608622 [CYTN]
528031
527956
-
Gly
GCC
[ENA]
¡û
>W1710097588
CYTX01000001
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663443 [CYTX]
360941
360866
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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