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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458848 (74 seq.)
>W1711005176
LQNF01000004
Bacillota
Oceanobacillus damuensis [LQNF]
139434
139506
+
Ala
GGC
[ENA]
¡û
>W131175603
ARJJ01000043
Bacillota
Sporolactobacillus vineae DSM 21990 = SL153 [ARJJ]
70647
70721
+
Ala
GGC
[ENA]
¡û
>W1711171768
LWBL02000049
Bacillota
Bacillus marinisedimentorum NC2-31 [LWBL]
43800
43874
+
Ala
GGC
[ENA]
¡û
>W1711699407
MSLQ01000011
Bacillota
Alkalihalophilus pseudofirmus [MSLQ]
73085
73013
-
Ala
GGC
[ENA]
¡û
>C002990
BA000004
Bacillota
Halalkalibacterium halodurans C-125 [BA000004]
3457850
3457775
-
Ala
GGC
[Ensembl]
¡û
>w027503
ABCF01000023
Bacillota
Bacillus sp. SG-1 [ABCF]
18762
18837
+
Ala
GGC
[ENA]
¡û
>WENV180345988
OBLN01017461
[OBLN] sediment metagenome; sediment
901
826
-
Ala
GGC
[ENA]
¢þ
>W141075220
ATAE01000038
Bacillota
Alkalihalophilus marmarensis DSM 21297 [ATAE]
9807
9735
-
Ala
GGC
[ENA]
¡û
>W08005507
ABHZ01000006
Bacillota
Salisediminibacterium selenitireducens MLS10 [ABHZ]
16856
16931
+
Ala
GGC
[ENA]
¡û
>W141093278
AVBB01000240
Bacillota
Priestia megaterium MSP20.1 [AVBB]
27672
27600
-
Ala
GGC
[ENA]
¡û
>W141148307
AWXW01000024
Bacillota
Thalassobacillus devorans MSP14 [AWXW]
105959
106032
+
Ala
GGC
[ENA]
¡û
>W141232033
BAUU01000010
Bacillota
Halalkalibacter hemicellulosilyticus JCM 9152 [BAUU]
121994
122066
+
Ala
GGC
[ENA]
¡û
>W141239571
CAER01000070
Bacillota
Oceanobacillus massiliensis Ndiop [CAER]
120126
120198
+
Ala
GGC
[ENA]
¡û
>W141261649
CCAX010000002
Bacillota
Oceanobacillus picturae [CCAX]
169192
169120
-
Ala
GGC
[ENA]
¡û
>W141263471
CCDH010000003
Bacillota
Halobacillus karajensis dabanensis [CCDH]
44124
44197
+
Ala
GGC
[ENA]
¡û
>W141263532
CCDI010000002
Bacillota
Halobacillus karajensis [CCDI]
582781
582708
-
Ala
GGC
[ENA]
¡û
>W141263608
CCDJ010000002
Bacillota
Halobacillus karajensis trueperi [CCDJ]
582280
582207
-
Ala
GGC
[ENA]
¡û
>W141263684
CCDL010000001
Bacillota
Oceanobacillus manasiensis [CCDL]
171056
171128
+
Ala
GGC
[ENA]
¡û
>W141265657
CCFJ01000045
Bacillota
Bacillus andreraoultii KW-12 [CCFJ]
85677
85605
-
Ala
GGC
[ENA]
¡û
>W141267255
CCNM01000045
Bacillota
Bacillus andreraoultii KW-12 [CCNM]
85677
85605
-
Ala
GGC
[ENA]
¡û
>W141273102
CCRF01000073
Bacillota
Caldibacillus thermoamylovorans [CCRF]
23310
23385
+
Ala
GGC
[ENA]
¡û
>W141289235
JAQS01000036
Bacillota
Sporolactobacillus terrae HKM-1 [JAQS]
158517
158589
+
Ala
GGC
[ENA]
¡û
>WENV170000962
AGBJ01000060
[AGBJ] hypersaline lake metagenome; upper interface of the deep-sea hypersaline anoxic lake (DHAL) Thetis located South-East
10788
10863
+
Ala
GGC
[ENA]
¢þ
>WENV170005877
AMQJ01003152
[AMQJ] sediment metagenome; subsurface aquifer sediment
28561
28636
+
Ala
GGC
[ENA]
¢þ
>W141485084
JFZC01000030
Bacillota
Sporolactobacillus terrae DSM 11697 [JFZC]
4101
4029
-
Ala
GGC
[ENA]
¡û
>C181044102
CP020357
Bacillota
Oceanobacillus iheyensis CHQ24 [CP020357]
359551
359479
-
Ala
GGC
-
¡û
>C191037017
CP025688
Bacillota
Sporolactobacillus terrae DLG3 [CP025688]
717099
717027
-
Ala
GGC
-
¡û
>C191037075
CP025689
Bacillota
Sporolactobacillus terrae DRG1 [CP025689]
710672
710600
-
Ala
GGC
-
¡û
>C191098910
CP033046
Bacillota
Virgibacillus sp. Bac332 [CP033046]
1610434
1610362
-
Ala
GGC
-
¡û
>C191177512
CP040441
Bacillota
Halalkalibacterium halodurans [CP040441]
3474500
3474425
-
Ala
GGC
-
¡û
>W1910067254
BEXB01000064
Bacillota
Sporolactobacillus inulinus NBRC111894 [BEXB]
13606
13678
+
Ala
GGC
[ENA]
¡û
>W1910182220
BJMS01000044
Bacillota
Sporolactobacillus inulinus NBRC 13595 [BJMS]
695
767
+
Ala
GGC
[ENA]
¡û
>W1910228046
FNMN01000026
Bacillota
Bacillus sp. ES3 [FNMN]
514524
514451
-
Ala
GGC
[ENA]
¡û
>W1910371867
FUFU01000014
Bacillota
Terribacillus halophilus T-h1 [FUFU]
29091
29163
+
Ala
GGC
[ENA]
¡û
>W1910472041
FXEH01000004
Bacillota
Thalassobacillus devorans Marseille-P394 [FXEH]
487316
487389
+
Ala
GGC
[ENA]
¡û
>W1910930515
NISR01000002
Bacillota
Alteribacter populi FJAT-45347 [NISR]
1750003
1749928
-
Ala
GGC
[ENA]
¡û
>W1910940467
NJAQ01000003
Bacillota
Terribacillus goriensis DSM 18252 [NJAQ]
784987
784915
-
Ala
GGC
[ENA]
¡û
>W1910941858
NJGA01000012
Bacillota
Caldifermentibacillus hisashii C4 [NJGA]
46738
46665
-
Ala
GGC
[ENA]
¡û
>W1911143693
NPBD01000014
Bacillota
Terribacillus saccharophilus Feb-03 [NPBD]
69152
69080
-
Ala
GGC
[ENA]
¡û
>W1911143744
NPBE01000108
Bacillota
Terribacillus saccharophilus Jan-04 [NPBE]
6662
6734
+
Ala
GGC
[ENA]
¡û
>W1911143797
NPBF01000025
Bacillota
Virgibacillus sp. 7505 [NPBF]
344005
343933
-
Ala
GGC
[ENA]
¡û
>W1911143905
NPBH01000055
Bacillota
Terribacillus saccharophilus 7509 [NPBH]
126840
126768
-
Ala
GGC
[ENA]
¡û
>W1911143996
NPBJ01000016
Bacillota
Terribacillus saccharophilus Jan-17 [NPBJ]
27478
27550
+
Ala
GGC
[ENA]
¡û
>W1911144046
NPBK01000014
Bacillota
Terribacillus saccharophilus 7517-W [NPBK]
247705
247633
-
Ala
GGC
[ENA]
¡û
>W1911144092
NPBL01000011
Bacillota
Terribacillus saccharophilus 7518 [NPBL]
27484
27556
+
Ala
GGC
[ENA]
¡û
>W1911144154
NPBM01000048
Bacillota
Terribacillus saccharophilus Jan-20 [NPBM]
26868
26940
+
Ala
GGC
[ENA]
¡û
>W1911144298
NPBP01000023
Bacillota
Terribacillus saccharophilus 7521 [NPBP]
128605
128533
-
Ala
GGC
[ENA]
¡û
>W1911144588
NPBV01000017
Bacillota
Terribacillus saccharophilus 7528 [NPBV]
114410
114338
-
Ala
GGC
[ENA]
¡û
>W1911173302
NQFP01000010
Bacillota
Terribacillus sp. 7520-G [NQFP]
25831
25904
+
Ala
GGC
[ENA]
¡û
>W1911493206
OBEK01000004
Bacillota
Terribacillus aidingensis CGMCC 1.8913 [OBEK]
317585
317513
-
Ala
GGC
[ENA]
¡û
>W1911752699
QWLU01000007
Bacillota
Oceanobacillus picturae DMTMMB24 [QWLU]
60738
60810
+
Ala
GGC
[ENA]
¡û
>W1810062552
PDOF01000001
Bacillota
Alteribacter lacisalsi YSP-3 [PDOF]
22160
22235
+
Ala
GGC
[ENA]
¡û
>W1810869849
QUAE01000010
Bacillota
Halobacillus trueperi KCTC 3686 [QUAE]
56604
56677
+
Ala
GGC
[ENA]
¡û
>C151038956
CP008876
Bacillota
Terribacillus goriensis MP602 [CP008876]
698521
698449
-
Ala
GGC
[Ensembl]
¡û
>C10102100
CP001878
Bacillota
Alkalihalophilus pseudofirmus OF4 [CP001878]
893490
893418
-
Ala
GGC
[Ensembl]
¡û
>C10102160
CP001791
Bacillota
[Bacillus] selenitireducens MLS10 [CP001791]
1385691
1385766
+
Ala
GGC
[Ensembl]
¡û
>W1510562250
CTEA01000004
Bacillota
Thalassobacillus devorans TM-1 [CTEA]
86483
86410
-
Ala
GGC
[ENA]
¡û
>W1510669286
CWJM01000045
Bacillota
Bacillus andreraoultii SIT1 [CWJM]
85677
85605
-
Ala
GGC
[ENA]
¡û
>W1511505850
JXLS01000059
Bacillota
Caldibacillus thermoamylovorans B4065 [JXLS]
46849
46776
-
Ala
GGC
[ENA]
¡û
>W1511681964
LFJO01000002
Bacillota
Alkalihalobacillus pseudalcaliphilus DSM 8725 [LFJO]
405512
405587
+
Ala
GGC
[ENA]
¡û
>W121124160
BAEY01000006
Bacillota
Sporolactobacillus vineae DSM 21990 = SL153 [BAEY]
91806
91732
-
Ala
GGC
[ENA]
¡û
>W1610042323
BAXR01000002
Bacillota
Bacillus sp. JCM 19034 [BAXR]
121139
121213
+
Ala
GGC
[ENA]
¡û
>W1610043089
BAZO01000010
Bacillota
Halalkalibacter hemicellulosilyticus JCM 9152 [BAZO]
121994
122066
+
Ala
GGC
[ENA]
¡û
>W1610057472
BBXV01000008
Bacillota
Oceanobacillus picturae [BBXV]
62945
62873
-
Ala
GGC
[ENA]
¡û
>W1610855826
LQNF01000004
Bacillota
Oceanobacillus damuensis [LQNF]
139434
139506
+
Ala
GGC
[ENA]
¡û
>W1710039417
BAXR01000002
Bacillota
Bacillus sp. JCM 19034 [BAXR]
121139
121213
+
Ala
GGC
[ENA]
¡û
>W1710040249
BAZO01000010
Bacillota
Halalkalibacter hemicellulosilyticus JCM 9152 [BAZO]
121994
122066
+
Ala
GGC
[ENA]
¡û
>W1710054171
BBXV01000008
Bacillota
Oceanobacillus picturae [BBXV]
62945
62873
-
Ala
GGC
[ENA]
¡û
>W1710512014
FMZB01000009
Bacillota
Terribacillus halophilus [FMZB]
32320
32392
+
Ala
GGC
[ENA]
¡û
>W1710524765
FNIZ01000017
Bacillota
Halobacillus aidingensis [FNIZ]
69068
69143
+
Ala
GGC
[ENA]
¡û
>W1710540496
FNWW01000005
Bacillota
Halobacillus karajensis [FNWW]
337471
337398
-
Ala
GGC
[ENA]
¡û
>W1710546358
FOCD01000010
Bacillota
Terribacillus saccharophilus [FOCD]
2397
2325
-
Ala
GGC
[ENA]
¡û
>W1710562415
FOOY01000013
Bacillota
Sporolactobacillus nakayamae [FOOY]
109370
109298
-
Ala
GGC
[ENA]
¡û
>W1710566569
FOSB01000009
Bacillota
Halobacillus dabanensis [FOSB]
130681
130608
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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