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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458930 (51 seq.)
>W1711928283
NAEX01000163
Alphaproteobacteria
Bradyrhizobium canariense [NAEX]
265
190
-
Thr
CGT
[ENA]
¡û
>W1711928334
NAEY01000152
Alphaproteobacteria
Bradyrhizobium canariense [NAEY]
115961
116036
+
Thr
CGT
[ENA]
¡û
>W1711928377
NAEZ01000159
Alphaproteobacteria
Bradyrhizobium canariense [NAEZ]
265
190
-
Thr
CGT
[ENA]
¡û
>W1711928417
NAFA01000181
Alphaproteobacteria
Bradyrhizobium canariense [NAFA]
115972
116047
+
Thr
CGT
[ENA]
¡û
>W1711928478
NAFB01000174
Alphaproteobacteria
Bradyrhizobium canariense [NAFB]
108007
108082
+
Thr
CGT
[ENA]
¡û
>W1711928529
NAFC01000167
Alphaproteobacteria
Bradyrhizobium canariense [NAFC]
177489
177564
+
Thr
CGT
[ENA]
¡û
>W1711928572
NAFD01000180
Alphaproteobacteria
Bradyrhizobium canariense [NAFD]
43869
43794
-
Thr
CGT
[ENA]
¡û
>W1711928615
NAFE01000213
Alphaproteobacteria
Bradyrhizobium canariense [NAFE]
133990
134065
+
Thr
CGT
[ENA]
¡û
>W1711928665
NAFF01000099
Alphaproteobacteria
Bradyrhizobium canariense [NAFF]
109829
109904
+
Thr
CGT
[ENA]
¡û
>W1711928711
NAFG01000166
Alphaproteobacteria
Bradyrhizobium canariense [NAFG]
109752
109827
+
Thr
CGT
[ENA]
¡û
>W1711928758
NAFH01000163
Alphaproteobacteria
Bradyrhizobium canariense [NAFH]
133991
134066
+
Thr
CGT
[ENA]
¡û
>W1711928809
NAFI01000172
Alphaproteobacteria
Bradyrhizobium canariense [NAFI]
109790
109865
+
Thr
CGT
[ENA]
¡û
>W1711928864
NAFJ01000148
Alphaproteobacteria
Bradyrhizobium canariense [NAFJ]
109489
109564
+
Thr
CGT
[ENA]
¡û
>W1711928906
NAFK01000163
Alphaproteobacteria
Bradyrhizobium canariense [NAFK]
43870
43795
-
Thr
CGT
[ENA]
¡û
>W1711928962
NAFL01000270
Alphaproteobacteria
Bradyrhizobium japonicum [NAFL]
89779
89704
-
Thr
CGT
[ENA]
¡û
>C171064703
CP017637
Alphaproteobacteria
Bradyrhizobium japonicum J5 [CP017637]
563571
563496
-
Thr
CGT
-
¡û
>W131164982
ARBF01000075
Alphaproteobacteria
Bradyrhizobium sp. WSM2793 WSM2793 [ARBF]
239632
239707
+
Thr
CGT
[ENA]
¡û
>W131167467
ARDH01000008
Alphaproteobacteria
Bradyrhizobium sp. WSM4349 WSM4349 [ARDH]
136856
136931
+
Thr
CGT
[ENA]
¡û
>W131228547
AUGA01000016
Alphaproteobacteria
Bradyrhizobium sp. th.b2 [AUGA]
5140
5065
-
Thr
CGT
[ENA]
¡û
>W141150217
AXAF01000003
Alphaproteobacteria
Bradyrhizobium ottawaense USDA 4 [AXAF]
170822
170747
-
Thr
CGT
[ENA]
¡û
>W141169208
AXVP01000063
Alphaproteobacteria
Bradyrhizobium japonicum USDA 123 [AXVP]
12729
12654
-
Thr
CGT
[ENA]
¡û
>W141220398
AZXU01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM1417 [AZXU]
1066324
1066399
+
Thr
CGT
[ENA]
¡û
>W141275934
JADK01000003
Alphaproteobacteria
Bradyrhizobium sp. URHA0013 [JADK]
1396227
1396302
+
Thr
CGT
[ENA]
¡û
>WENV170706114
LNAP01001183
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
31575
31500
-
Thr
CGT
[ENA]
¢þ
>WENV170707764
LNAP01032958
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
467
542
+
Thr
CGT
[ENA]
¢þ
>C181178136
CP029425
Alphaproteobacteria
Bradyrhizobium ottawaense OO99 [CP029425]
2469738
2469813
+
Thr
CGT
-
¡û
>C181178199
CP029426
Alphaproteobacteria
Bradyrhizobium amphicarpaeae 39S1MB [CP029426]
6945196
6945271
+
Thr
CGT
-
¡û
>C181178243
CP029427
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 85S1MB [CP029427]
6648637
6648712
+
Thr
CGT
-
¡û
>C191186639
CP041090
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 65S1MB [CP041090]
5957578
5957653
+
Thr
CGT
-
¡û
>W1910598944
LBJC01000024
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 53390 [LBJC]
629877
629952
+
Thr
CGT
[ENA]
¡û
>W1910599057
LBJQ01000088
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 51757 [LBJQ]
40204
40129
-
Thr
CGT
[ENA]
¡û
>W1911409822
NWTF01000002
Alphaproteobacteria
Bradyrhizobium ottawaense L2 [NWTF]
22392
22317
-
Thr
CGT
[ENA]
¡û
>W1810089644
PGEV01000001
Alphaproteobacteria
Afipia broomeae GAS525 [PGEV]
5718943
5718868
-
Thr
CGT
[ENA]
¡û
>W1810289855
PTFE01000009
Alphaproteobacteria
Bradyrhizobium sp. AC87j1 [PTFE]
118858
118933
+
Thr
CGT
[ENA]
¡û
>W1810400144
PYFW01000001
Alphaproteobacteria
Bradyrhizobium sp. MOS003 [PYFW]
166044
165969
-
Thr
CGT
[ENA]
¡û
>W1810400205
PYFX01000005
Alphaproteobacteria
Bradyrhizobium sp. MOS002 [PYFX]
234880
234805
-
Thr
CGT
[ENA]
¡û
>W1511681456
LFIQ01000039
Alphaproteobacteria
Bradyrhizobium pachyrhizi PAC 48 [LFIQ]
454991
455066
+
Thr
CGT
[ENA]
¡û
>C121000709
AP012279
Alphaproteobacteria
Bradyrhizobium cosmicum S23321 [AP012279]
278048
278123
+
Thr
CGT
[Ensembl]
¡û
>C161107824
LN901633
Alphaproteobacteria
Bradyrhizobium sp. [LN901633]
299021
299096
+
Thr
CGT
-
¡û
>C161107913
LN907826
Alphaproteobacteria
Bradyrhizobium sp. [LN907826]
851338
851413
+
Thr
CGT
-
¡û
>W121036188
AHLW01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM471 [AHLW]
322657
322732
+
Thr
CGT
[ENA]
¡û
>W121036439
AHMB01000043
Alphaproteobacteria
Bradyrhizobium sp. WSM1253 [AHMB]
301328
301403
+
Thr
CGT
[ENA]
¡û
>W121065281
AJPX01000079
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15354 [AJPX]
1470
1395
-
Thr
CGT
[ENA]
¡û
>W121065335
AJPY01000231
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15517 [AJPY]
3001
3076
+
Thr
CGT
[ENA]
¡û
>W121065472
AJQB01000132
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 83623 [AJQB]
21443
21368
-
Thr
CGT
[ENA]
¡û
>W121065696
AJQF01000462
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15544 [AJQF]
8642
8717
+
Thr
CGT
[ENA]
¡û
>W121065724
AJQG01000210
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15615 [AJQG]
46048
45973
-
Thr
CGT
[ENA]
¡û
>W121065784
AJQH01000285
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15635 [AJQH]
22732
22657
-
Thr
CGT
[ENA]
¡û
>W1610514632
FMAI01000021
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
133816
133891
+
Thr
CGT
[ENA]
¡û
>W1710500322
FMAI01000021
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
133816
133891
+
Thr
CGT
[ENA]
¡û
>W1710569828
FOUS01000015
Alphaproteobacteria
Bradyrhizobium sp. Rc3b [FOUS]
168739
168664
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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