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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458945 (119 seq.)
>W1711687593
MSCR01000024
Bacillota
Ligilactobacillus salivarius [MSCR]
62846
62772
-
Thr
CGT
[ENA]
¡û
>W1711943479
NBDX01000014
Bacillota
Ligilactobacillus salivarius [NBDX]
34508
34434
-
Thr
CGT
[ENA]
¡û
>W1711943521
NBDY01000011
Bacillota
Ligilactobacillus salivarius [NBDY]
21253
21179
-
Thr
CGT
[ENA]
¡û
>W1711943561
NBDZ01000013
Bacillota
Ligilactobacillus salivarius [NBDZ]
15672
15598
-
Thr
CGT
[ENA]
¡û
>W1711943598
NBEA01000017
Bacillota
Ligilactobacillus salivarius [NBEA]
77030
76956
-
Thr
CGT
[ENA]
¡û
>W1711943640
NBEB01000061
Bacillota
Ligilactobacillus salivarius [NBEB]
83307
83233
-
Thr
CGT
[ENA]
¡û
>W1711943698
NBEC01000060
Bacillota
Ligilactobacillus salivarius [NBEC]
83293
83219
-
Thr
CGT
[ENA]
¡û
>W1711943740
NBED01000027
Bacillota
Ligilactobacillus salivarius [NBED]
23082
23008
-
Thr
CGT
[ENA]
¡û
>W1711943781
NBEE01000015
Bacillota
Ligilactobacillus salivarius [NBEE]
35406
35332
-
Thr
CGT
[ENA]
¡û
>W1711943819
NBEF01000024
Bacillota
Ligilactobacillus salivarius [NBEF]
30567
30493
-
Thr
CGT
[ENA]
¡û
>W1711943869
NBEG01000017
Bacillota
Ligilactobacillus salivarius [NBEG]
36461
36387
-
Thr
CGT
[ENA]
¡û
>W1711943909
NBEH01000014
Bacillota
Ligilactobacillus salivarius [NBEH]
15672
15598
-
Thr
CGT
[ENA]
¡û
>W1711943955
NBEI01000016
Bacillota
Ligilactobacillus salivarius [NBEI]
15672
15598
-
Thr
CGT
[ENA]
¡û
>W1711944006
NBEJ01000012
Bacillota
Ligilactobacillus salivarius [NBEJ]
15606
15532
-
Thr
CGT
[ENA]
¡û
>W1711944056
NBEK01000014
Bacillota
Ligilactobacillus salivarius [NBEK]
26183
26109
-
Thr
CGT
[ENA]
¡û
>W1711944094
NBEL01000012
Bacillota
Ligilactobacillus salivarius [NBEL]
26183
26109
-
Thr
CGT
[ENA]
¡û
>W1711944146
NBEM01000014
Bacillota
Ligilactobacillus salivarius [NBEM]
37136
37062
-
Thr
CGT
[ENA]
¡û
>W1711944200
NBEN01000009
Bacillota
Ligilactobacillus salivarius [NBEN]
114133
114059
-
Thr
CGT
[ENA]
¡û
>W1711944248
NBEO01000024
Bacillota
Ligilactobacillus salivarius [NBEO]
23083
23009
-
Thr
CGT
[ENA]
¡û
>W1711944309
NBEP01000112
Bacillota
Ligilactobacillus salivarius [NBEP]
23025
22951
-
Thr
CGT
[ENA]
¡û
>W1711944331
NBEQ01000021
Bacillota
Ligilactobacillus salivarius [NBEQ]
33784
33710
-
Thr
CGT
[ENA]
¡û
>W1711944390
NBER01000037
Bacillota
Ligilactobacillus salivarius [NBER]
49522
49448
-
Thr
CGT
[ENA]
¡û
>W1711944434
NBES01000028
Bacillota
Ligilactobacillus salivarius [NBES]
49123
49049
-
Thr
CGT
[ENA]
¡û
>W1711944478
NBET01000020
Bacillota
Ligilactobacillus salivarius [NBET]
27802
27728
-
Thr
CGT
[ENA]
¡û
>W1711944523
NBEU01000012
Bacillota
Ligilactobacillus salivarius [NBEU]
15672
15598
-
Thr
CGT
[ENA]
¡û
>W1711944567
NBEV01000031
Bacillota
Ligilactobacillus salivarius [NBEV]
11559
11485
-
Thr
CGT
[ENA]
¡û
>W1711944618
NBEW01000048
Bacillota
Ligilactobacillus salivarius [NBEW]
49525
49451
-
Thr
CGT
[ENA]
¡û
>W1711944657
NBEX01000053
Bacillota
Ligilactobacillus salivarius [NBEX]
49520
49446
-
Thr
CGT
[ENA]
¡û
>W1711944698
NBEY01000051
Bacillota
Ligilactobacillus salivarius [NBEY]
49520
49446
-
Thr
CGT
[ENA]
¡û
>W1712035994
NFHF01000025
Bacillota
Ligilactobacillus salivarius [NFHF]
526
600
+
Thr
CGT
[ENA]
¡û
>W1712036916
NFHV01000019
Bacillota
Ligilactobacillus salivarius [NFHV]
38597
38523
-
Thr
CGT
[ENA]
¡û
>W1712041974
NFLK01000014
Bacillota
Ligilactobacillus salivarius [NFLK]
510
584
+
Thr
CGT
[ENA]
¡û
>C171057131
CP017107
Bacillota
Ligilactobacillus salivarius CICC 23174 [CP017107]
903857
903931
+
Thr
CGT
-
¡û
>C171113754
CP020858
Bacillota
Ligilactobacillus salivarius ZLS006 [CP020858]
431664
431738
+
Thr
CGT
-
¡û
>C171129040
LT604074
Bacillota
Ligilactobacillus salivarius [LT604074]
485387
485313
-
Thr
CGT
-
¡û
>C012726
CP000233
Bacillota
Ligilactobacillus salivarius UCC118 [CP000233]
1406954
1406882
-
Thr
CGT
[Ensembl]
¡û
>WENV181428172
OGCU01003075
[OGCU] metagenome; Human gut stool
3633
3559
-
Thr
CGT
[ENA]
¢þ
>WENV181428646
OGCW01000021
[OGCW] metagenome; Human gut stool
112950
112876
-
Thr
CGT
[ENA]
¢þ
>WENV181429236
OGCX01000362
[OGCX] metagenome; Human gut stool
23078
23004
-
Thr
CGT
[ENA]
¢þ
>WENV181454456
OGED01002309
[OGED] metagenome; Human gut stool
4844
4770
-
Thr
CGT
[ENA]
¢þ
>WENV181458083
OGEJ01000441
[OGEJ] metagenome; Human gut stool
68
142
+
Thr
CGT
[ENA]
¢þ
>WENV181468239
OGES01001097
[OGES] metagenome; Human gut stool
68
142
+
Thr
CGT
[ENA]
¢þ
>WENV181483218
OGFK01001339
[OGFK] metagenome; Human gut stool
337
411
+
Thr
CGT
[ENA]
¢þ
>WENV181484529
OGFL01004850
[OGFL] metagenome; Human gut stool
4946
4872
-
Thr
CGT
[ENA]
¢þ
>WENV181494122
OGGB01000230
[OGGB] metagenome; Human gut stool
48683
48609
-
Thr
CGT
[ENA]
¢þ
>WENV181501776
OGGI01001585
[OGGI] metagenome; Human gut stool
68
142
+
Thr
CGT
[ENA]
¢þ
>WENV181506327
OGGM01000837
[OGGM] metagenome; Human gut stool
68
142
+
Thr
CGT
[ENA]
¢þ
>WENV181517823
OGGZ01045574
[OGGZ] metagenome; Human gut stool
64
138
+
Thr
CGT
[ENA]
¢þ
>WENV181518670
OGHB01000036
[OGHB] metagenome; Human gut stool
112316
112242
-
Thr
CGT
[ENA]
¢þ
>WENV181525441
OGHJ01000274
[OGHJ] metagenome; Human gut stool
87
161
+
Thr
CGT
[ENA]
¢þ
>WENV181538635
OGHY01031531
[OGHY] metagenome; Human gut stool
995
921
-
Thr
CGT
[ENA]
¢þ
>WENV181539195
OGHZ01003762
[OGHZ] metagenome; Human gut stool
337
411
+
Thr
CGT
[ENA]
¢þ
>WENV181541253
OGIC01007370
[OGIC] metagenome; Human gut stool
1895
1821
-
Thr
CGT
[ENA]
¢þ
>WENV181550433
OGIM01004076
[OGIM] metagenome; Human gut stool
1712
1638
-
Thr
CGT
[ENA]
¢þ
>WENV181551156
OGIN01001150
[OGIN] metagenome; Human gut stool
68
142
+
Thr
CGT
[ENA]
¢þ
>WENV181557005
OGIV01001385
[OGIV] metagenome; Human gut stool
14307
14233
-
Thr
CGT
[ENA]
¢þ
>WENV181558249
OGIX01000090
[OGIX] metagenome; Human gut stool
338
412
+
Thr
CGT
[ENA]
¢þ
>WENV181570798
OGJO01000048
[OGJO] metagenome; Human gut stool
68
142
+
Thr
CGT
[ENA]
¢þ
>WENV181582252
OGKB01001100
[OGKB] metagenome; Human gut stool
15412
15338
-
Thr
CGT
[ENA]
¢þ
>WENV181587868
OGKH01000055
[OGKH] metagenome; Human gut stool
112421
112347
-
Thr
CGT
[ENA]
¢þ
>WENV181588737
OGKJ01001012
[OGKJ] metagenome; Human gut stool
6602
6528
-
Thr
CGT
[ENA]
¢þ
>WENV181589732
OGKM01000068
[OGKM] metagenome; Human gut stool
68
142
+
Thr
CGT
[ENA]
¢þ
>WENV181993922
OHAS01006376
[OHAS] human gut metagenome; faeces
338
412
+
Thr
CGT
[ENA]
¢þ
>WENV182009076
OHBJ01007663
[OHBJ] human gut metagenome; faeces
87
161
+
Thr
CGT
[ENA]
¢þ
>WENV182404436
OIEU01025202
[OIEU] human gut metagenome; human gut
261
187
-
Thr
CGT
[ENA]
¢þ
>W141256144
CBVR010000017
Bacillota
Ligilactobacillus salivarius cp400 [CBVR]
3109
3183
+
Thr
CGT
[ENA]
¡û
>WENV182988378
OLAF01006496
[OLAF] human gut metagenome; human gut
1062
988
-
Thr
CGT
[ENA]
¢þ
>WENV183022828
OLFR01010021
[OLFR] human gut metagenome; human gut
782
856
+
Thr
CGT
[ENA]
¢þ
>WENV183132332
OLOB01001263
[OLOB] human gut metagenome; faeces
16962
16888
-
Thr
CGT
[ENA]
¢þ
>WENV183205660
OLPZ01024954
[OLPZ] human gut metagenome; faeces
1544
1470
-
Thr
CGT
[ENA]
¢þ
>WENV183217688
OLQI01001278
[OLQI] human gut metagenome; faeces
16940
16866
-
Thr
CGT
[ENA]
¢þ
>WENV183407166
OMAC01000066
[OMAC] human gut metagenome; feces
773
847
+
Thr
CGT
[ENA]
¢þ
>WENV183427532
OMBN01000072
[OMBN] human gut metagenome; feces
112315
112241
-
Thr
CGT
[ENA]
¢þ
>WENV183428764
OMBO01000240
[OMBO] human gut metagenome; feces
50222
50148
-
Thr
CGT
[ENA]
¢þ
>WENV183472748
OMER01000060
[OMER] human gut metagenome; feces
68
142
+
Thr
CGT
[ENA]
¢þ
>WENV183606096
OODN01000460
[OODN] human gut metagenome; human gut
68
142
+
Thr
CGT
[ENA]
¢þ
>WENV183792364
PPYF01459306
[PPYF] human gut metagenome; stool from patient with Crohn's disease
70
144
+
Thr
CGT
[ENA]
¢þ
>WENV170638952
JFBN01596990
[JFBN] chicken gut metagenome; ceca of Broiler chicken
545
471
-
Thr
CGT
[ENA]
¢þ
>C181182061
CP029616
Bacillota
Ligilactobacillus salivarius DJ-sa-01 [CP029616]
538744
538670
-
Thr
CGT
-
¡û
>W09123190
ACGT01000040
Bacillota
Ligilactobacillus salivarius ATCC 11741 [ACGT]
91
165
+
Thr
CGT
[ENA]
¡û
>W1910649657
LXZB01000084
Bacillota
Ligilactobacillus salivarius KLW006 [LXZB]
586
512
-
Thr
CGT
[ENA]
¡û
>W1910649668
LXZB01000093
Bacillota
Ligilactobacillus salivarius KLW006 [LXZB]
274
348
+
Thr
CGT
[ENA]
¡û
>W1910649783
LXZE01000149
Bacillota
Ligilactobacillus salivarius KLW003 [LXZE]
261
335
+
Thr
CGT
[ENA]
¡û
>W1910649833
LXZF01000007
Bacillota
Ligilactobacillus salivarius KLW002 [LXZF]
264
338
+
Thr
CGT
[ENA]
¡û
>W1910649994
LXZK01000001
Bacillota
Ligilactobacillus salivarius KLF004 [LXZK]
287
361
+
Thr
CGT
[ENA]
¡û
>W1910650050
LXZL01000027
Bacillota
Ligilactobacillus salivarius KLF003 [LXZL]
264
338
+
Thr
CGT
[ENA]
¡û
>W1910650189
LXZO01000091
Bacillota
Ligilactobacillus salivarius KLA006 [LXZO]
264
338
+
Thr
CGT
[ENA]
¡û
>W1910650229
LXZP01000021
Bacillota
Ligilactobacillus salivarius KLA005 [LXZP]
177
251
+
Thr
CGT
[ENA]
¡û
>W1910650300
LXZQ01000031
Bacillota
Ligilactobacillus salivarius KLA004 [LXZQ]
264
338
+
Thr
CGT
[ENA]
¡û
>W1910650343
LXZR01000032
Bacillota
Ligilactobacillus salivarius KLA003 [LXZR]
177
251
+
Thr
CGT
[ENA]
¡û
>W1910650399
LXZS01000026
Bacillota
Ligilactobacillus salivarius KLA002 [LXZS]
176
250
+
Thr
CGT
[ENA]
¡û
>W1910650476
LXZT01000029
Bacillota
Ligilactobacillus salivarius KLA001 [LXZT]
28299
28225
-
Thr
CGT
[ENA]
¡û
>W1910874512
NDYW01000007
Bacillota
Ligilactobacillus salivarius L28 [NDYW]
295
369
+
Thr
CGT
[ENA]
¡û
>W1911569778
PCZA01000012
Bacillota
Lactobacillus sp. UMNPBX9 [PCZA]
50874
50800
-
Thr
CGT
[ENA]
¡û
>W1911570219
PCZH01000040
Bacillota
Lactobacillus sp. UMNPBX2 [PCZH]
276
350
+
Thr
CGT
[ENA]
¡û
>W1810070464
PECX01000003
Bacillota
Ligilactobacillus salivarius SGL 03 [PECX]
77150
77076
-
Thr
CGT
[ENA]
¡û
>W1810185960
PKGN01000004
Bacillota
Ligilactobacillus salivarius 290 [PKGN]
111
185
+
Thr
CGT
[ENA]
¡û
>W1810472400
QAGU01000019
Bacillota
Ligilactobacillus salivarius DS2_12 [QAGU]
295
369
+
Thr
CGT
[ENA]
¡û
>W1810472476
QAGV01000013
Bacillota
Ligilactobacillus salivarius DS11_12 [QAGV]
45249
45175
-
Thr
CGT
[ENA]
¡û
>W1810488227
QAZF01000020
Bacillota
Ligilactobacillus salivarius DS3_12 [QAZF]
26250
26176
-
Thr
CGT
[ENA]
¡û
>W1810488278
QAZG01000020
Bacillota
Ligilactobacillus salivarius DS13_12 [QAZG]
26200
26126
-
Thr
CGT
[ENA]
¡û
>W1810584358
QFAS01000012
Bacillota
Ligilactobacillus salivarius A3iob [QFAS]
1120
1194
+
Thr
CGT
[ENA]
¡û
>W1810797352
QRMK01000016
Bacillota
Ligilactobacillus salivarius AM09-40 [QRMK]
472
546
+
Thr
CGT
[ENA]
¡û
>W1810829801
QSLH01000005
Bacillota
Ligilactobacillus salivarius AM25-8 [QSLH]
21045
21119
+
Thr
CGT
[ENA]
¡û
>W1810838186
QSTB01000019
Bacillota
Ligilactobacillus salivarius OM08-20 [QSTB]
72
146
+
Thr
CGT
[ENA]
¡û
>C151030957
CP007646
Bacillota
Ligilactobacillus salivarius JCM1046 [CP007646]
1413466
1413392
-
Thr
CGT
[Ensembl]
¡û
>C151082336
CP011403
Bacillota
Ligilactobacillus salivarius str. Ren [CP011403]
1365642
1365568
-
Thr
CGT
[Ensembl]
¡û
>W10124245
AEBA01000041
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
30535
30461
-
Thr
CGT
[ENA]
¡û
>C10109071
CP002034
Bacillota
Ligilactobacillus salivarius CECT 5713 [CP002034]
1407635
1407561
-
Thr
CGT
[Ensembl]
¡û
>W1511441067
JUQA01000113
Bacillota
Ligilactobacillus salivarius 866_LSAL [JUQA]
16961
16887
-
Thr
CGT
[ENA]
¡û
>W1511443805
JUTI01000018
Bacillota
Ligilactobacillus salivarius 778_LSAL [JUTI]
76
150
+
Thr
CGT
[ENA]
¡û
>W1511448792
JVAF01000027
Bacillota
Ligilactobacillus salivarius 609_LSAL [JVAF]
7831
7757
-
Thr
CGT
[ENA]
¡û
>W11131133
AEBA01000041
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
30535
30461
-
Thr
CGT
[ENA]
¡û
>W11167242
AFMN01000001
Bacillota
Ligilactobacillus salivarius NIAS840 [AFMN]
418458
418384
-
Thr
CGT
[ENA]
¡û
>W11168582
AFOI01000002
Bacillota
Ligilactobacillus salivarius GJ-24 [AFOI]
481782
481856
+
Thr
CGT
[ENA]
¡û
>W121045154
AICL01000005
Bacillota
Ligilactobacillus salivarius SMXD51 [AICL]
277996
277922
-
Thr
CGT
[ENA]
¡û
>W1610031408
AYYT01000023
Bacillota
Ligilactobacillus salivarius DSM 20555 = ATCC 11741 [AYYT]
40
114
+
Thr
CGT
[ENA]
¡û
>W1610035187
AZEH01000039
Bacillota
Liquorilactobacillus oeni DSM 19972 [AZEH]
853089
853015
-
Thr
CGT
[ENA]
¡û
>W1710032314
AZEH01000039
Bacillota
Liquorilactobacillus oeni DSM 19972 [AZEH]
853089
853015
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK