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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458954 (35 seq.)
>W1711384711
MEDI01000393
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
3236
3162
-
Thr
GGT
[ENA]
¡û
>W1711385178
MEDU01000138
Alphaproteobacteria
Devosia sp. SCN 66-27 [MEDU]
73089
73015
-
Thr
GGT
[ENA]
¡û
>C171101466
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
1455904
1455978
+
Thr
GGT
-
¡û
>W131163843
ARAB01000008
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
1847064
1846990
-
Thr
GGT
[ENA]
¡û
>W131230404
AUHO01000007
Alphaproteobacteria
Kaistia adipata DSM 17808 [AUHO]
349717
349643
-
Thr
GGT
[ENA]
¡û
>WENV180015675
FSSO01000051
[FSSO] metagenome; soil
3439
3513
+
Thr
GGT
[ENA]
¢þ
>WENV181222818
OFDC01000362
[OFDC] hot springs metagenome; Water
24799
24725
-
Thr
GGT
[ENA]
¢þ
>WENV181227079
OFDN01001580
[OFDN] hot springs metagenome; Water
2790
2864
+
Thr
GGT
[ENA]
¢þ
>WENV181308525
OFIS01056510
[OFIS] sludge metagenome; sludge
151
225
+
Thr
GGT
[ENA]
¢þ
>W141191705
AYPY01000013
Alphaproteobacteria
Rhodobacter capsulatus YW1 [AYPY]
66359
66433
+
Thr
GGT
[ENA]
¡û
>W141191910
AYQC01000027
Alphaproteobacteria
Rhodobacter capsulatus R121 [AYQC]
66372
66446
+
Thr
GGT
[ENA]
¡û
>W141200364
AYXS01000045
Alphaproteobacteria
Asaia sp. SF2.1 [AYXS]
176568
176642
+
Thr
GGT
[ENA]
¡û
>W141226139
BAJV01000001
Alphaproteobacteria
Asaia prunellae JCM 25354 [BAJV]
69652
69578
-
Thr
GGT
[ENA]
¡û
>W141247956
CBLX010000027
Alphaproteobacteria
Asaia bogorensis SF2.1 [CBLX]
270367
270441
+
Thr
GGT
[ENA]
¡û
>WENV183661883
ORJL010144335
[ORJL] groundwater metagenome; groundwater
15582
15508
-
Thr
GGT
[ENA]
¢þ
>WENV183677109
ORJL011711939
[ORJL] groundwater metagenome; groundwater
76
2
-
Thr
GGT
[ENA]
¢þ
>WENV183687984
ORMF011217286
[ORMF] groundwater metagenome; groundwater
605
679
+
Thr
GGT
[ENA]
¢þ
>WENV183740165
PJUF01000561
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4986
4912
-
Thr
GGT
[ENA]
¢þ
>WENV170552403
CXWJ01062387
[CXWJ] wastewater metagenome; activated sludge
658
584
-
Thr
GGT
[ENA]
¢þ
>WENV170652309
JRYH01000685
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
29257
29183
-
Thr
GGT
[ENA]
¢þ
>W141485034
JFZB01000007
Alphaproteobacteria
Paenirhodobacter enshiensis [JFZB]
163223
163149
-
Thr
GGT
[ENA]
¡û
>C181089628
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
2627657
2627731
+
Thr
GGT
-
¡û
>C191029933
CP025086
Alphaproteobacteria
Methylovirgula ligni BW863 [CP025086]
2385809
2385735
-
Thr
GGT
-
¡û
>C191118879
CP034086
Alphaproteobacteria
Methylocystis rosea GW6 [CP034086]
225827
225901
+
Thr
GGT
-
¡û
>W1910501571
FYAP01000009
Alphaproteobacteria
Pannonibacter sp. CS1GBFMT1 [FYAP]
123127
123201
+
Thr
GGT
[ENA]
¡û
>W1910744026
MHZU01000010
Alphaproteobacteria
Rhodobacterales bacterium RIFCSPHIGHO2_12_FULL_62_75 [MHZU]
206779
206705
-
Thr
GGT
[ENA]
¡û
>W1911495357
OBMT01000003
Alphaproteobacteria
Rhodobacter maris JA276 [OBMT]
56472
56398
-
Thr
GGT
[ENA]
¡û
>W1810503566
QBKF01000010
Alphaproteobacteria
Pararhodobacter aggregans DSM 18938 [QBKF]
70887
70813
-
Thr
GGT
[ENA]
¡û
>W1810583988
QEYD01000006
Alphaproteobacteria
Pararhodobacter marinus CIC4N-9 [QEYD]
16755
16681
-
Thr
GGT
[ENA]
¡û
>W1810685808
QKZO01000003
Alphaproteobacteria
Rhodobacter capsulatus DSM 1710 [QKZO]
382966
383040
+
Thr
GGT
[ENA]
¡û
>C10110617
CP001312
Alphaproteobacteria
Rhodobacter capsulatus SB 1003 [CP001312]
2754199
2754273
+
Thr
GGT
[Ensembl]
¡û
>W1511705836
LGSQ01000001
Alphaproteobacteria
Pannonibacter phragmitetus CGMCC9175 [LGSQ]
133613
133539
-
Thr
GGT
[ENA]
¡û
>C161001103
AP014690
Alphaproteobacteria
Asaia bogorensis NBRC 16594 [AP014690]
2272612
2272538
-
Thr
GGT
[Ensembl]
¡û
>W1710546366
FOCE01000001
Alphaproteobacteria
Gemmobacter aquatilis [FOCE]
436484
436558
+
Thr
GGT
[ENA]
¡û
>W1710598836
FTOG01000010
Alphaproteobacteria
Rhodobacter aestuarii [FTOG]
11002
10928
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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