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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458955 (56 seq.)
>W1711078259
LSMS01000033
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
2543
2618
+
Phe
GAA
[ENA]
¡û
>W1711767449
MUZV01000005
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
128264
128189
-
Phe
GAA
[ENA]
¡û
>W1711947416
NBOC01000002
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
246328
246403
+
Phe
GAA
[ENA]
¡û
>W1711947473
NBOD01000002
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
128347
128272
-
Phe
GAA
[ENA]
¡û
>W1711947563
NBOE01000006
Gammaproteobacteria
Colwellia polaris [NBOE]
83412
83487
+
Phe
GAA
[ENA]
¡û
>W1711947633
NBOF01000003
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
448517
448592
+
Phe
GAA
[ENA]
¡û
>W1711947690
NBOG01000001
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
191863
191788
-
Phe
GAA
[ENA]
¡û
>C171034459
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
2954787
2954862
+
Phe
GAA
-
¡û
>C171034566
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
1588719
1588644
-
Phe
GAA
-
¡û
>C171108359
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
2943618
2943693
+
Phe
GAA
-
¡û
>WENV182540218
OJAF01000296
[OJAF] seawater metagenome; Sea water
1911
1986
+
Phe
GAA
[ENA]
¢þ
>WENV182544594
OJBI01000049
[OJBI] seawater metagenome; Sea water
22295
22220
-
Phe
GAA
[ENA]
¢þ
>WENV182544804
OJBJ01004683
[OJBJ] seawater metagenome; Sea water
71
146
+
Phe
GAA
[ENA]
¢þ
>WENV182545072
OJBM01000010
[OJBM] seawater metagenome; Sea water
41131
41056
-
Phe
GAA
[ENA]
¢þ
>WENV182547386
OJBS01001563
[OJBS] seawater metagenome; Sea water
1288
1213
-
Phe
GAA
[ENA]
¢þ
>WENV182549940
OJBZ01000653
[OJBZ] seawater metagenome; Sea water
6180
6255
+
Phe
GAA
[ENA]
¢þ
>WENV182549991
OJBZ01001244
[OJBZ] seawater metagenome; Sea water
3373
3298
-
Phe
GAA
[ENA]
¢þ
>WENV182554622
OJCW01000205
[OJCW] seawater metagenome; Sea water
20502
20577
+
Phe
GAA
[ENA]
¢þ
>WENV182555143
OJCY01004514
[OJCY] seawater metagenome; Sea water
1617
1542
-
Phe
GAA
[ENA]
¢þ
>WENV182556782
OJDH01000075
[OJDH] seawater metagenome; Sea water
49844
49769
-
Phe
GAA
[ENA]
¢þ
>WENV182557100
OJDI01000917
[OJDI] seawater metagenome; Sea water
80
5
-
Phe
GAA
[ENA]
¢þ
>WENV182557737
OJDK01005214
[OJDK] seawater metagenome; Sea water
347
422
+
Phe
GAA
[ENA]
¢þ
>WENV182557814
OJDL01000040
[OJDL] seawater metagenome; Sea water
8740
8665
-
Phe
GAA
[ENA]
¢þ
>WENV182559953
OJDR01000008
[OJDR] seawater metagenome; Sea water
101553
101478
-
Phe
GAA
[ENA]
¢þ
>WENV182561191
OJDV01012940
[OJDV] seawater metagenome; Sea water
168
243
+
Phe
GAA
[ENA]
¢þ
>WENV182562328
OJDZ01000904
[OJDZ] seawater metagenome; Sea water
2486
2411
-
Phe
GAA
[ENA]
¢þ
>WENV182562413
OJDZ01002453
[OJDZ] seawater metagenome; Sea water
1541
1616
+
Phe
GAA
[ENA]
¢þ
>WENV182565516
OJEH01009788
[OJEH] seawater metagenome; Sea water
1688
1613
-
Phe
GAA
[ENA]
¢þ
>WENV182565877
OJEI01000652
[OJEI] seawater metagenome; Sea water
6849
6924
+
Phe
GAA
[ENA]
¢þ
>WENV182567131
OJEN01004241
[OJEN] seawater metagenome; Sea water
1112
1037
-
Phe
GAA
[ENA]
¢þ
>WENV182567535
OJEO01005298
[OJEO] seawater metagenome; Sea water
1734
1659
-
Phe
GAA
[ENA]
¢þ
>WENV182568275
OJET01000018
[OJET] seawater metagenome; Sea water
67282
67207
-
Phe
GAA
[ENA]
¢þ
>WENV182575126
OJFU01000038
[OJFU] seawater metagenome; Sea water
9041
8966
-
Phe
GAA
[ENA]
¢þ
>WENV182575508
OJFV01000011
[OJFV] seawater metagenome; Sea water
151206
151281
+
Phe
GAA
[ENA]
¢þ
>WENV182576097
OJFX01003036
[OJFX] seawater metagenome; Sea water
1531
1456
-
Phe
GAA
[ENA]
¢þ
>WENV182577717
OJGH01002751
[OJGH] seawater metagenome; Sea water
504
579
+
Phe
GAA
[ENA]
¢þ
>WENV182579688
OJGT01000007
[OJGT] seawater metagenome; Sea water
26038
26113
+
Phe
GAA
[ENA]
¢þ
>WENV182580117
OJGU01004179
[OJGU] seawater metagenome; Sea water
510
435
-
Phe
GAA
[ENA]
¢þ
>WENV182580821
OJGW01015319
[OJGW] seawater metagenome; Sea water
1227
1152
-
Phe
GAA
[ENA]
¢þ
>WENV182585122
OJHH01001622
[OJHH] seawater metagenome; Sea water
5274
5349
+
Phe
GAA
[ENA]
¢þ
>WENV182590633
OJIJ01000863
[OJIJ] seawater metagenome; Sea water
2010
2085
+
Phe
GAA
[ENA]
¢þ
>WENV182592639
OJIR01006391
[OJIR] seawater metagenome; Sea water
1792
1717
-
Phe
GAA
[ENA]
¢þ
>WENV183055485
OLHD01000016
[OLHD] seawater metagenome; Sea water
47358
47283
-
Phe
GAA
[ENA]
¢þ
>WENV183055690
OLHF01000076
[OLHF] seawater metagenome; Sea water
25389
25464
+
Phe
GAA
[ENA]
¢þ
>WENV183057627
OLHM01000035
[OLHM] seawater metagenome; Sea water
42733
42808
+
Phe
GAA
[ENA]
¢þ
>WENV183057951
OLHN01000059
[OLHN] seawater metagenome; Sea water
15093
15018
-
Phe
GAA
[ENA]
¢þ
>WENV183059754
OLHV01002288
[OLHV] seawater metagenome; Sea water
2177
2252
+
Phe
GAA
[ENA]
¢þ
>WENV183060061
OLHW01007090
[OLHW] seawater metagenome; Sea water
901
826
-
Phe
GAA
[ENA]
¢þ
>WENV183522164
OMOM01000337
[OMOM] seawater metagenome; Sea water
9518
9593
+
Phe
GAA
[ENA]
¢þ
>WENV170780759
MAAB01019628
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1390
1465
+
Phe
GAA
[ENA]
¢þ
>WENV170781169
MAAB01029590
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
7089
7164
+
Phe
GAA
[ENA]
¢þ
>C181169944
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
3357107
3357032
-
Phe
GAA
-
¡û
>C191128357
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
3573884
3573809
-
Phe
GAA
-
¡û
>W1511533777
JYNI01000062
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
25908
25833
-
Phe
GAA
[ENA]
¡û
>W1610917275
LSMS01000033
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
2543
2618
+
Phe
GAA
[ENA]
¡û
>W1710545235
FOBI01000002
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
148685
148610
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK