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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45932 (69 seq.)
>W1710804957
LJZP01000011
Gammaproteobacteria
Serratia rubidaea [LJZP]
16379
16292
-
Ser
TGA
[ENA]
¡û
>W1711627979
MPNU01000001
Gammaproteobacteria
Edwardsiella piscicida [MPNU]
2134081
2133994
-
Ser
TGA
[ENA]
¡û
>W1711797563
MWTM01000012
Gammaproteobacteria
Yersinia entomophaga [MWTM]
44841
44928
+
Ser
TGA
[ENA]
¡û
>W1712109969
NJFP01000003
Gammaproteobacteria
Hafnia alvei [NJFP]
3689762
3689675
-
Ser
TGA
[ENA]
¡û
>W1712110144
NJFR01000003
Gammaproteobacteria
Serratia odorifera [NJFR]
2291544
2291457
-
Ser
TGA
[ENA]
¡û
>C171045428
CP016044
Gammaproteobacteria
Edwardsiella piscicida S11-285 [CP016044]
2048089
2048002
-
Ser
TGA
-
¡û
>WENV180137872
OATP01001034
[OATP] human gut metagenome; faeces
10923
11010
+
Ser
TGA
[ENA]
¢þ
>WENV180143588
OATY01000004
[OATY] human gut metagenome; faeces
134092
134005
-
Ser
TGA
[ENA]
¢þ
>WENV180211561
OBAM01009110
[OBAM] human gut metagenome; human gut
1210
1123
-
Ser
TGA
[ENA]
¢þ
>W141235828
BAYT01000004
Gammaproteobacteria
Edwardsiella piscicida [BAYT]
36969
36882
-
Ser
TGA
[ENA]
¡û
>WENV183357417
OLXF01035438
[OLXF] human gut metagenome; feces
243
156
-
Ser
TGA
[ENA]
¢þ
>WENV183371127
OLXV01007255
[OLXV] human gut metagenome; feces
1077
1164
+
Ser
TGA
[ENA]
¢þ
>W141350010
JCKH01000002
Gammaproteobacteria
Hafnia alvei FB1 [JCKH]
101575
101488
-
Ser
TGA
[ENA]
¡û
>WENV183521654
OMNU01016229
[OMNU] human gut metagenome; feces
165
78
-
Ser
TGA
[ENA]
¢þ
>C181002171
AP017469
Gammaproteobacteria
Hafnia sp. CBA7124 [AP017469]
2451052
2450965
-
Ser
TGA
-
¡û
>C181055089
CP021971
Gammaproteobacteria
Hafnia alvei CBA7135 [CP021971]
2455873
2455786
-
Ser
TGA
-
¡û
>C181078045
CP023268
Gammaproteobacteria
Serratia sp. MYb239 [CP023268]
3362106
3362019
-
Ser
TGA
-
¡û
>C181203308
LC127084
Gammaproteobacteria
Edwardsiella tarda ET-1 [LC127084]
1400662
1400575
-
Ser
TGA
-
¡û
>C181217072
LS483492
Gammaproteobacteria
Serratia rubidaea NCTC10848 [LS483492]
1605010
1605097
+
Ser
TGA
-
¡û
>C191008094
CP004083
Gammaproteobacteria
Enterobacteriaceae bacterium bta3-1 [CP004083]
1261160
1261247
+
Ser
TGA
-
¡û
>C191145299
CP035668
Gammaproteobacteria
Edwardsiella piscicida MS-18-199 [CP035668]
3451288
3451375
+
Ser
TGA
-
¡û
>C191152036
CP036514
Gammaproteobacteria
Hafnia alvei PCM_1220 [CP036514]
2482562
2482475
-
Ser
TGA
-
¡û
>C191195915
LR134117
Gammaproteobacteria
Serratia odorifera NCTC11214 [LR134117]
3152975
3153062
+
Ser
TGA
-
¡û
>C191197798
LR134155
Gammaproteobacteria
Serratia rubidaea NCTC9419 [LR134155]
526060
525973
-
Ser
TGA
-
¡û
>C191212447
LR134493
Gammaproteobacteria
Serratia rubidaea NCTC10036 [LR134493]
3303157
3303244
+
Ser
TGA
-
¡û
>C191221161
LR590463
Gammaproteobacteria
Serratia rubidaea NCTC12971 [LR590463]
3338930
3338843
-
Ser
TGA
-
¡û
>W141710513
JMPK01000051
Gammaproteobacteria
Hafnia alvei ATCC 13337 [JMPK]
56128
56041
-
Ser
TGA
[ENA]
¡û
>W1910211956
FMIQ01000082
Gammaproteobacteria
Hafnia alvei GB001 [FMIQ]
67408
67321
-
Ser
TGA
[ENA]
¡û
>W1910563473
JACQ01000014
Gammaproteobacteria
Edwardsiella tarda PPD130/91 [JACQ]
138165
138078
-
Ser
TGA
[ENA]
¡û
>W1911397640
NWFL02000004
Gammaproteobacteria
Hafnia paralvei FDAARGOS_230 [NWFL]
3503465
3503378
-
Ser
TGA
[ENA]
¡û
>W1911653320
QCZL01000008
Gammaproteobacteria
Yersinia sp. IP36721 [QCZL]
120174
120087
-
Ser
TGA
[ENA]
¡û
>W1911744498
QVOO01000127
Gammaproteobacteria
Serratia odorifera KCTC 2937 [QVOO]
145857
145944
+
Ser
TGA
[ENA]
¡û
>W1810015056
BGMJ01000036
Gammaproteobacteria
Edwardsiella piscicida JF1307 [BGMJ]
9114
9027
-
Ser
TGA
[ENA]
¡û
>W1810015118
BGMK01000034
Gammaproteobacteria
Edwardsiella piscicida JF1411 [BGMK]
5412
5499
+
Ser
TGA
[ENA]
¡û
>W1810533472
QCZP01000001
Gammaproteobacteria
Edwardsiella piscicida LADL97-168 [QCZP]
1367721
1367634
-
Ser
TGA
[ENA]
¡û
>W1810533537
QCZQ01000001
Gammaproteobacteria
Edwardsiella piscicida LADL99-462 [QCZQ]
1047735
1047648
-
Ser
TGA
[ENA]
¡û
>W1810533638
QCZR01000001
Gammaproteobacteria
Edwardsiella piscicida MA97-004 [QCZR]
1359753
1359666
-
Ser
TGA
[ENA]
¡û
>W1810533724
QCZS01000001
Gammaproteobacteria
Edwardsiella piscicida S07-262 [QCZS]
1359815
1359728
-
Ser
TGA
[ENA]
¡û
>W1810533796
QCZT01000001
Gammaproteobacteria
Edwardsiella piscicida S07-275 [QCZT]
790141
790054
-
Ser
TGA
[ENA]
¡û
>W1810533902
QCZU01000002
Gammaproteobacteria
Edwardsiella piscicida S07-346 [QCZU]
41283
41196
-
Ser
TGA
[ENA]
¡û
>W1810533975
QCZV01000002
Gammaproteobacteria
Edwardsiella piscicida S07-348 [QCZV]
716274
716361
+
Ser
TGA
[ENA]
¡û
>W1810534099
QCZW01000008
Gammaproteobacteria
Edwardsiella piscicida S07-534 [QCZW]
153327
153240
-
Ser
TGA
[ENA]
¡û
>W1810534188
QCZX01000010
Gammaproteobacteria
Edwardsiella piscicida S07-1019 [QCZX]
39802
39889
+
Ser
TGA
[ENA]
¡û
>W1810784909
QRAZ01002991
Gammaproteobacteria
Hafnia paralvei C10 [QRAZ]
6220
6133
-
Ser
TGA
[ENA]
¡û
>C151057782
CP009706
Gammaproteobacteria
Hafnia alvei FB1 [CP009706]
2649982
2649895
-
Ser
TGA
[Ensembl]
¡û
>W10110442
ADBY01000046
Gammaproteobacteria
Serratia odorifera DSM 4582 [ADBY]
145724
145811
+
Ser
TGA
[ENA]
¡û
>C10106714
CP001135
Gammaproteobacteria
Edwardsiella tarda EIB202 [CP001135]
2006785
2006698
-
Ser
TGA
[Ensembl]
¡û
>C10106809
CP002154
Gammaproteobacteria
Edwardsiella tarda FL6-60 [CP002154]
1958430
1958343
-
Ser
TGA
[Ensembl]
¡û
>W1510457863
CPYD01000002
Gammaproteobacteria
Yersinia nurmii type strain: CIP110231 [CPYD]
321401
321488
+
Ser
TGA
[ENA]
¡û
>W11112879
ADBY01000046
Gammaproteobacteria
Serratia odorifera DSM 4582 [ADBY]
145724
145811
+
Ser
TGA
[ENA]
¡û
>W1511345728
JRGQ01000023
Gammaproteobacteria
Edwardsiella tarda ET883 [JRGQ]
43657
43570
-
Ser
TGA
[ENA]
¡û
>W1511399562
JTET01000023
Gammaproteobacteria
Hafnia alvei DSM 30098 [JTET]
192919
193006
+
Ser
TGA
[ENA]
¡û
>W1511399617
JTEU02000008
Gammaproteobacteria
Hafnia alvei DSM 30099 [JTEU]
312329
312416
+
Ser
TGA
[ENA]
¡û
>W1511586393
LAZF01000034
Gammaproteobacteria
Obesumbacterium proteus LE8 [LAZF]
8532
8619
+
Ser
TGA
[ENA]
¡û
>W1511586424
LAZG01000010
Gammaproteobacteria
Hafnia alvei ATCC 29926 [LAZG]
170572
170659
+
Ser
TGA
[ENA]
¡û
>C121002384
CP002295
Gammaproteobacteria
Serratia symbiotica str. 'Cinara cedri' [CP002295]
1021454
1021367
-
Ser
TGA
[Ensembl]
¡û
>C161023067
CP010029
Gammaproteobacteria
Yersinia entomophaga MH96 [CP010029]
3783066
3783153
+
Ser
TGA
-
¡û
>C161065263
CP014031
Gammaproteobacteria
Hafnia paralvei FDAARGOS_158 [CP014031]
3471819
3471732
-
Ser
TGA
-
¡û
>C161072321
CP014474
Gammaproteobacteria
Serratia rubidaea 1122 [CP014474]
2183098
2183185
+
Ser
TGA
[Ensembl]
¡û
>C161074187
CP014608
Gammaproteobacteria
Obesumbacterium proteus DSM 2777 [CP014608]
3241274
3241361
+
Ser
TGA
-
¡û
>C161086845
CP015379
Gammaproteobacteria
Hafnia alvei HUMV-5920 [CP015379]
3498869
3498956
+
Ser
TGA
-
¡û
>W1610077232
BCZJ01000003
Gammaproteobacteria
Serratia rubidaea NBRC 103169 [BCZJ]
163461
163548
+
Ser
TGA
[ENA]
¡û
>W121008384
AGCI01000010
Gammaproteobacteria
Hafnia alvei ATCC 51873 [AGCI]
63519
63432
-
Ser
TGA
[ENA]
¡û
>C131010272
CP003942
Gammaproteobacteria
Serratia sp. FGI94 [CP003942]
3209455
3209368
-
Ser
TGA
[Ensembl]
¡û
>C131013165
CP004141
Gammaproteobacteria
Edwardsiella piscicida C07-087 [CP004141]
1976473
1976386
-
Ser
TGA
[Ensembl]
¡û
>W1610668814
LJZP01000011
Gammaproteobacteria
Serratia rubidaea [LJZP]
16379
16292
-
Ser
TGA
[ENA]
¡û
>W1610994666
LXET01000041
Gammaproteobacteria
Hafnia paralvei ATCC 29927 [LXET]
26638
26551
-
Ser
TGA
[ENA]
¡û
>W1610994985
LXEX01000055
Gammaproteobacteria
Obesumbacterium proteus ATCC 12841 [LXEX]
32402
32315
-
Ser
TGA
[ENA]
¡û
>W1710074870
BCZJ01000003
Gammaproteobacteria
Serratia rubidaea NBRC 103169 [BCZJ]
163461
163548
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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