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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45935 (99 seq.)
>W1710869860
LMKA01000141
Bacteroidota
Chryseobacterium sp. Leaf201 [LMKA]
2208
2123
-
Ser
GCT
[ENA]
¡û
>W1710987525
LPUR01000018
Bacteroidota
Chryseobacterium kwangjuense [LPUR]
217137
217050
-
Ser
GCT
[ENA]
¡û
>W131227764
AUFK01000016
Bacteroidota
Epilithonimonas caeni DSM 17710 [AUFK]
1715
1628
-
Ser
GCT
[ENA]
¡û
>W1711505129
MKVE01000043
Bacteroidota
Chryseobacterium sp. 36-9 Sep-36 [MKVE]
19865
19780
-
Ser
GCT
[ENA]
¡û
>W131237059
AUMU01000013
Bacteroidota
Chryseobacterium gregarium DSM 19109 [AUMU]
290
205
-
Ser
GCT
[ENA]
¡û
>W141168418
AXUZ01000006
Bacteroidota
Chryseobacterium sp. UNC8MFCol [AXUZ]
346
261
-
Ser
GCT
[ENA]
¡û
>WENV181731615
OGQD01001776
[OGQD] human gut metagenome; faeces
287
202
-
Ser
GCT
[ENA]
¢þ
>W141233086
BAVL01000002
Bacteroidota
Chryseobacterium indologenes NBRC 14944 [BAVL]
38567
38482
-
Ser
GCT
[ENA]
¡û
>WENV183738131
PJUD01088720
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
365
280
-
Ser
GCT
[ENA]
¢þ
>WENV183738714
PJUE01000126
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
101048
101133
+
Ser
GCT
[ENA]
¢þ
>WENV183740589
PJUF01003933
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4269
4354
+
Ser
GCT
[ENA]
¢þ
>WENV183741622
PJUG01000216
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
3762
3847
+
Ser
GCT
[ENA]
¢þ
>WENV183742094
PJUH01000243
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
8497
8582
+
Ser
GCT
[ENA]
¢þ
>WENV183742463
PJUI01000002
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
934937
935022
+
Ser
GCT
[ENA]
¢þ
>WENV170010721
APMI01026177
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1275
1360
+
Ser
GCT
[ENA]
¢þ
>C181056714
CP022058
Bacteroidota
Chryseobacterium indologenes FDAARGOS_337 [CP022058]
114128
114043
-
Ser
GCT
-
¡û
>C181074425
CP022986
Bacteroidota
Chryseobacterium camelliae Dolsongi-HT1 [CP022986]
1497588
1497673
+
Ser
GCT
-
¡û
>C181075420
CP023049
Bacteroidota
Chryseobacterium piperi ATCC BAA-1782 [CP023049]
2099306
2099391
+
Ser
GCT
-
¡û
>C181092488
CP023968
Bacteroidota
Chryseobacterium indologenes FDAARGOS_379 [CP023968]
448205
448120
-
Ser
GCT
-
¡û
>C191111306
CP033760
Bacteroidota
Chryseobacterium indologenes FDAARGOS_537 [CP033760]
4813502
4813587
+
Ser
GCT
-
¡û
>C191112894
CP033828
Bacteroidota
Chryseobacterium indologenes FDAARGOS_510 [CP033828]
3445953
3446038
+
Ser
GCT
-
¡û
>C191115175
CP033912
Bacteroidota
Chryseobacterium shandongense H5143 [CP033912]
3580600
3580515
-
Ser
GCT
-
¡û
>C191115298
CP033915
Bacteroidota
Chryseobacterium shandongense G0207 [CP033915]
3899449
3899364
-
Ser
GCT
-
¡û
>C191115354
CP033917
Bacteroidota
Chryseobacterium sp. G0201 [CP033917]
2678039
2677954
-
Ser
GCT
-
¡û
>C191115421
CP033918
Bacteroidota
Chryseobacterium sp. G0186 [CP033918]
4388259
4388174
-
Ser
GCT
-
¡û
>C191115462
CP033920
Bacteroidota
Chryseobacterium carnipullorum G0188 [CP033920]
38362
38447
+
Ser
GCT
-
¡û
>C191115562
CP033921
Bacteroidota
Chryseobacterium carnipullorum F9942 [CP033921]
3522332
3522417
+
Ser
GCT
-
¡û
>C191115628
CP033922
Bacteroidota
Chryseobacterium sp. G0162 [CP033922]
1273868
1273953
+
Ser
GCT
-
¡û
>C191115758
CP033923
Bacteroidota
Chryseobacterium nakagawai G0041 [CP033923]
4330150
4330065
-
Ser
GCT
-
¡û
>C191115852
CP033924
Bacteroidota
Chryseobacterium lactis KC_1864 [CP033924]
2774145
2774060
-
Ser
GCT
-
¡û
>C191115958
CP033925
Bacteroidota
Chryseobacterium lactis G0197 [CP033925]
659267
659182
-
Ser
GCT
-
¡û
>C191116008
CP033926
Bacteroidota
Chryseobacterium joostei DSM 16927 [CP033926]
4383373
4383288
-
Ser
GCT
-
¡û
>C191116231
CP033930
Bacteroidota
Chryseobacterium indologenes H5559 [CP033930]
4606631
4606546
-
Ser
GCT
-
¡û
>C191120503
CP034160
Bacteroidota
Epilithonimonas vandammei H6466 [CP034160]
1204962
1205047
+
Ser
GCT
-
¡û
>C191120572
CP034161
Bacteroidota
Epilithonimonas vandammei F5649 [CP034161]
2495273
2495188
-
Ser
GCT
-
¡û
>C191210017
LR134386
Bacteroidota
Chryseobacterium nakagawai NCTC13529 [LR134386]
1416848
1416763
-
Ser
GCT
-
¡û
>C191218950
LR215967
Bacteroidota
Chryseobacterium indologenes 3012STDY6981895 [LR215967]
4497268
4497183
-
Ser
GCT
-
¡û
>W141809175
JPRH01000003
Bacteroidota
Chryseobacterium soli [JPRH]
296696
296611
-
Ser
GCT
[ENA]
¡û
>W141809218
JPRI01000002
Bacteroidota
Chryseobacterium vrystaatense [JPRI]
369639
369726
+
Ser
GCT
[ENA]
¡û
>W141809290
JPRJ01000005
Bacteroidota
Chryseobacterium piperi [JPRJ]
104953
105038
+
Ser
GCT
[ENA]
¡û
>W141809493
JPRN01000014
Bacteroidota
Chryseobacterium sp. JM1 [JPRN]
122543
122630
+
Ser
GCT
[ENA]
¡û
>W141809544
JPRO01000005
Bacteroidota
Chryseobacterium luteum [JPRO]
23830
23915
+
Ser
GCT
[ENA]
¡û
>W1910341176
FTPE01000011
Bacteroidota
Chryseobacterium sp. JV274 [FTPE]
969368
969453
+
Ser
GCT
[ENA]
¡û
>W1910439683
FWDI01000005
Bacteroidota
Chryseobacterium phocaeense 6021061333 [FWDI]
474784
474699
-
Ser
GCT
[ENA]
¡û
>W1910808746
MUGP01000002
Bacteroidota
Chryseobacterium shigense DSM 17126 [MUGP]
379170
379085
-
Ser
GCT
[ENA]
¡û
>W1911218433
NRQS01000013
Bacteroidota
Chryseobacterium sp. CH1 [NRQS]
48535
48620
+
Ser
GCT
[ENA]
¡û
>W1911566429
PCOU01000051
Bacteroidota
Chryseobacterium sp. MYb7 [PCOU]
174
89
-
Ser
GCT
[ENA]
¡û
>W1911567065
PCPH01000005
Bacteroidota
Chryseobacterium culicis MYb44 [PCPH]
51981
51896
-
Ser
GCT
[ENA]
¡û
>W1911567487
PCPP01000004
Bacteroidota
Chryseobacterium culicis MYb25 [PCPP]
51981
51896
-
Ser
GCT
[ENA]
¡û
>W1911647520
QAJO01000001
Bacteroidota
Chryseobacterium sp. KBW03 [QAJO]
400078
400163
+
Ser
GCT
[ENA]
¡û
>W1911680457
QICI01000107
Bacteroidota
Chryseobacterium sp. CH21 [QICI]
46877
46962
+
Ser
GCT
[ENA]
¡û
>W1911701299
QNUF01000048
Bacteroidota
Chryseobacterium rhizosphaerae KCTC 22548 [QNUF]
578
493
-
Ser
GCT
[ENA]
¡û
>W1911701375
QNUH01000010
Bacteroidota
Chryseobacterium elymi KCTC 22547 [QNUH]
148727
148812
+
Ser
GCT
[ENA]
¡û
>W1911749751
QWIU01000002
Bacteroidota
Chryseobacterium nematophagum JUb129 [QWIU]
3482211
3482296
+
Ser
GCT
[ENA]
¡û
>W1810071785
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
1709545
1709460
-
Ser
GCT
[ENA]
¡û
>W1810234056
PPED02000003
Bacteroidota
Chryseobacterium phosphatilyticum ISE14 [PPED]
56002
55917
-
Ser
GCT
[ENA]
¡û
>W1810234251
PPEG02000007
Bacteroidota
Chryseobacterium viscerum 687B-08 [PPEG]
8220
8135
-
Ser
GCT
[ENA]
¡û
>W1810234327
PPEH01000010
Bacteroidota
Chryseobacterium lactis NCTC11390 [PPEH]
125790
125875
+
Ser
GCT
[ENA]
¡û
>W1810234357
PPEI02000002
Bacteroidota
Chryseobacterium oncorhynchi 701B-08 [PPEI]
979286
979371
+
Ser
GCT
[ENA]
¡û
>W1810385708
PXUE01000009
Bacteroidota
Chryseobacterium aurantiacum F30 [PXUE]
37725
37640
-
Ser
GCT
[ENA]
¡û
>W1810475419
QAJA01000071
Bacteroidota
Chryseobacterium sp. HMWF028 [QAJA]
8274
8189
-
Ser
GCT
[ENA]
¡û
>W1810707202
QNFY01000005
Bacteroidota
Chryseobacterium lathyri KCTC 22544 [QNFY]
167860
167775
-
Ser
GCT
[ENA]
¡û
>W1810860722
QTTJ01000001
Bacteroidota
Chryseobacterium sp. 1335 [QTTJ]
2485873
2485958
+
Ser
GCT
[ENA]
¡û
>W1511432093
JUGG01000017
Bacteroidota
Chryseobacterium sp. YR460 [JUGG]
11163
11078
-
Ser
GCT
[ENA]
¡û
>W1511432526
JUGO01000011
Bacteroidota
Chryseobacterium sp. YR485 [JUGO]
7809
7724
-
Ser
GCT
[ENA]
¡û
>W1511432753
JUGT01000011
Bacteroidota
Chryseobacterium sp. YR561 [JUGT]
311245
311330
+
Ser
GCT
[ENA]
¡û
>W1511432954
JUGW01000017
Bacteroidota
Chryseobacterium sp. CF356 [JUGW]
192
107
-
Ser
GCT
[ENA]
¡û
>W1511433026
JUGX01000019
Bacteroidota
Chryseobacterium sp. OV715 [JUGX]
44867
44780
-
Ser
GCT
[ENA]
¡û
>W1511433379
JUHD01000037
Bacteroidota
Chryseobacterium sp. OV705 [JUHD]
11835
11750
-
Ser
GCT
[ENA]
¡û
>W1511685121
LFND01000006
Bacteroidota
Chryseobacterium angstadtii KM [LFND]
440716
440803
+
Ser
GCT
[ENA]
¡û
>W1511685173
LFNE01000002
Bacteroidota
Chryseobacterium sp. FH2 [LFNE]
186044
185959
-
Ser
GCT
[ENA]
¡û
>W1511685274
LFNF01000003
Bacteroidota
Chryseobacterium sp. BLS98 [LFNF]
417546
417461
-
Ser
GCT
[ENA]
¡û
>C161055091
CP013293
Bacteroidota
Chryseobacterium sp. IHB B 17019 [CP013293]
539704
539619
-
Ser
GCT
[Ensembl]
¡û
>C161084417
CP015199
Bacteroidota
Chryseobacterium glaciei IHBB 10212 [CP015199]
748064
748149
+
Ser
GCT
[Ensembl]
¡û
>W121086460
AKJY01000014
Bacteroidota
Chryseobacterium populi CF314 [AKJY]
127760
127675
-
Ser
GCT
[ENA]
¡û
>W1610205682
FCNN01000322
Bacteroidota
Chryseobacterium indologenes [FCNN]
6217
6132
-
Ser
GCT
[ENA]
¡û
>W1610634198
LIRF01000006
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
256673
256588
-
Ser
GCT
[ENA]
¡û
>W1610732206
LMKA01000141
Bacteroidota
Chryseobacterium sp. Leaf201 [LMKA]
2208
2123
-
Ser
GCT
[ENA]
¡û
>W1610842469
LPUR01000018
Bacteroidota
Chryseobacterium kwangjuense [LPUR]
217137
217050
-
Ser
GCT
[ENA]
¡û
>W1710207183
FCNN01000322
Bacteroidota
Chryseobacterium indologenes [FCNN]
6217
6132
-
Ser
GCT
[ENA]
¡û
>W1710514897
FNBH01000002
Bacteroidota
Epilithonimonas hungarica hungaricum [FNBH]
103916
103829
-
Ser
GCT
[ENA]
¡û
>W1710518782
FNEG01000001
Bacteroidota
Chryseobacterium jejuense [FNEG]
47363
47278
-
Ser
GCT
[ENA]
¡û
>W1710526598
FNKL01000001
Bacteroidota
Chryseobacterium soldanellicola [FNKL]
642293
642378
+
Ser
GCT
[ENA]
¡û
>W1710540580
FNWX01000045
Bacteroidota
Epilithonimonas hominis [FNWX]
19851
19938
+
Ser
GCT
[ENA]
¡û
>W1710565729
FORL01000002
Bacteroidota
Chryseobacterium indologenes [FORL]
684035
684120
+
Ser
GCT
[ENA]
¡û
>W1710570413
FOVD01000002
Bacteroidota
Chryseobacterium oleae [FOVD]
229990
229903
-
Ser
GCT
[ENA]
¡û
>W1710582281
FPKW01000021
Bacteroidota
Chryseobacterium limigenitum [FPKW]
52003
52088
+
Ser
GCT
[ENA]
¡û
>W1710582625
FQUD01000002
Bacteroidota
Chryseobacterium sp. OV279 [FQUD]
174786
174699
-
Ser
GCT
[ENA]
¡û
>W1710583921
FQVE01000002
Bacteroidota
Chryseobacterium vrystaatense YR203 [FQVE]
512402
512315
-
Ser
GCT
[ENA]
¡û
>W1710585933
FQWT01000005
Bacteroidota
Chryseobacterium oranimense [FQWT]
152723
152808
+
Ser
GCT
[ENA]
¡û
>W1710589883
FRAM01000003
Bacteroidota
Epilithonimonas mollis molle [FRAM]
370712
370627
-
Ser
GCT
[ENA]
¡û
>W1710590249
FRAV01000037
Bacteroidota
Chryseobacterium polytrichastri [FRAV]
49680
49765
+
Ser
GCT
[ENA]
¡û
>W1710592014
FRCD01000008
Bacteroidota
Chryseobacterium carnipullorum [FRCD]
207354
207267
-
Ser
GCT
[ENA]
¡û
>W1710596322
FTMM01000009
Bacteroidota
Chryseobacterium sp. RU37D [FTMM]
9773
9858
+
Ser
GCT
[ENA]
¡û
>W1710598342
FTNY01000002
Bacteroidota
Chryseobacterium shigense [FTNY]
674890
674977
+
Ser
GCT
[ENA]
¡û
>W1710598463
FTNZ01000011
Bacteroidota
Chryseobacterium joostei [FTNZ]
5138
5053
-
Ser
GCT
[ENA]
¡û
>W1710600197
FTPU01000048
Bacteroidota
Epilithonimonas bovis DSM 19482 [FTPU]
705
620
-
Ser
GCT
[ENA]
¡û
>W1710606070
FWXM01000010
Bacteroidota
Chryseobacterium sp. YR221 [FWXM]
61690
61775
+
Ser
GCT
[ENA]
¡û
>W1710768575
LIRF01000006
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
256673
256588
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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