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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45973 (124 seq.)
>W1710807324
LKCX01000025
Betaproteobacteria
Curvibacter sp. PAE-UM [LKCX]
18109
18198
+
Ser
CGA
[ENA]
¡û
>W1710822452
LKUW01000088
Betaproteobacteria
Paracidovorax citrulli [LKUW]
232
143
-
Ser
CGA
[ENA]
¡û
>W1710861460
LMDQ01000013
Betaproteobacteria
Acidovorax sp. Root402 [LMDQ]
323975
324064
+
Ser
CGA
[ENA]
¡û
>W1710865371
LMGP01000018
Betaproteobacteria
Acidovorax sp. Root568 [LMGP]
312370
312459
+
Ser
CGA
[ENA]
¡û
>W1710866650
LMHQ01000012
Betaproteobacteria
Acidovorax sp. Root70 [LMHQ]
360826
360915
+
Ser
CGA
[ENA]
¡û
>W1710867458
LMIH01000012
Betaproteobacteria
Acidovorax sp. Root217 [LMIH]
485622
485711
+
Ser
CGA
[ENA]
¡û
>W1710867564
LMIJ01000023
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
57504
57593
+
Ser
CGA
[ENA]
¡û
>W1710868452
LMJC01000001
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
575610
575699
+
Ser
CGA
[ENA]
¡û
>W1710868714
LMJH01000008
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
543694
543605
-
Ser
CGA
[ENA]
¡û
>W1710872387
LMLY01000023
Betaproteobacteria
Acidovorax sp. Leaf76 [LMLY]
523114
523203
+
Ser
CGA
[ENA]
¡û
>W1710872420
LMLZ01000001
Betaproteobacteria
Acidovorax sp. Leaf78 [LMLZ]
333082
333171
+
Ser
CGA
[ENA]
¡û
>W1710872607
LMMC01000023
Betaproteobacteria
Acidovorax sp. Leaf84 [LMMC]
515717
515806
+
Ser
CGA
[ENA]
¡û
>W1710875956
LMOV01000009
Betaproteobacteria
Acidovorax sp. Leaf160 [LMOV]
301
212
-
Ser
CGA
[ENA]
¡û
>W1710877006
LMPT01000018
Betaproteobacteria
Acidovorax sp. Leaf191 [LMPT]
523024
523113
+
Ser
CGA
[ENA]
¡û
>W1711073161
LSIH01000123
Betaproteobacteria
Acidovorax delafieldii [LSIH]
3697
3786
+
Ser
CGA
[ENA]
¡û
>W1711073670
LSIU01000671
Betaproteobacteria
Comamonadaceae bacterium CCH4-C5 [LSIU]
1096
1007
-
Ser
CGA
[ENA]
¡û
>W1711125006
LUKZ01000012
Betaproteobacteria
Acidovorax sp. GW101-3H11 [LUKZ]
381219
381130
-
Ser
CGA
[ENA]
¡û
>W1711384804
MEDK01000018
Betaproteobacteria
Acidovorax sp. SCN 65-108 [MEDK]
1597
1508
-
Ser
CGA
[ENA]
¡û
>W1711394758
MERR01000002
Betaproteobacteria
Burkholderiales bacterium GWA2_64_37 [MERR]
81064
81153
+
Ser
CGA
[ENA]
¡û
>W1711501331
MKRM01000150
Betaproteobacteria
Acidovorax sp. 65-7 [MKRM]
8944
9033
+
Ser
CGA
[ENA]
¡û
>W1711503026
MKTF01000079
Betaproteobacteria
Burkholderiales bacterium 64-34 [MKTF]
1672
1583
-
Ser
CGA
[ENA]
¡û
>W1711504610
MKUS01000049
Betaproteobacteria
Burkholderiales bacterium 68-12 [MKUS]
42877
42966
+
Ser
CGA
[ENA]
¡û
>W1712096729
NIAZ01000065
Betaproteobacteria
Acidovorax sp. T1m [NIAZ]
15748
15659
-
Ser
CGA
[ENA]
¡û
>C171118070
CP021359
Betaproteobacteria
Acidovorax carolinensis NA2 [CP021359]
3101728
3101639
-
Ser
CGA
-
¡û
>C171118121
CP021361
Betaproteobacteria
Acidovorax carolinensis NA3 [CP021361]
3229102
3229013
-
Ser
CGA
-
¡û
>C171118145
CP021362
Betaproteobacteria
Acidovorax carolinensis P3 [CP021362]
851836
851925
+
Ser
CGA
-
¡û
>C171118223
CP021366
Betaproteobacteria
Acidovorax carolinensis P4 [CP021366]
3229397
3229308
-
Ser
CGA
-
¡û
>C171120923
CP021648
Betaproteobacteria
Acidovorax sp. T1 [CP021648]
960295
960384
+
Ser
CGA
-
¡û
>W131045659
AMRP01000518
Betaproteobacteria
Paracidovorax citrulli ZJU1106 [AMRP]
2294
2383
+
Ser
CGA
[ENA]
¡û
>W131227113
AUEX01000009
Betaproteobacteria
Acidovorax sp. JHL-9 [AUEX]
38692
38781
+
Ser
CGA
[ENA]
¡û
>C000133
CP000512
Betaproteobacteria
Paracidovorax citrulli AAC00-1 [CP000512]
4186503
4186414
-
Ser
CGA
[Ensembl]
¡û
>C000385
CP000539
Betaproteobacteria
Acidovorax sp. JS42 [CP000539]
3633117
3633028
-
Ser
CGA
[Ensembl]
¡û
>WENV012666
AACY020344738
Marine microbial communities from Global Ocean Sampling (GOS)
230
319
+
Ser
CGA
[ENA]
>WENV180284105
OBID01015403
[OBID] metagenome; sludge
566
655
+
Ser
CGA
[ENA]
¢þ
>WENV181414108
OGCL01000017
[OGCL] hot springs metagenome; Hot spring water
147025
146936
-
Ser
CGA
[ENA]
¢þ
>WENV181414141
OGCL01000047
[OGCL] hot springs metagenome; Hot spring water
79867
79778
-
Ser
CGA
[ENA]
¢þ
>W141278756
JAFU01000001
Betaproteobacteria
Acidovorax sp. JHL-3 [JAFU]
1649964
1650053
+
Ser
CGA
[ENA]
¡û
>WENV183744872
PJUL01000489
[PJUL] feces metagenome; Chicken feces enriched on filter paper
18072
18161
+
Ser
CGA
[ENA]
¢þ
>WENV183744888
PJUL01000551
[PJUL] feces metagenome; Chicken feces enriched on filter paper
25220
25131
-
Ser
CGA
[ENA]
¢þ
>WENV170010838
APMI01030984
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2106
2017
-
Ser
CGA
[ENA]
¢þ
>WENV170705511
LNAO01001409
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2499
2588
+
Ser
CGA
[ENA]
¢þ
>WENV170707877
LNAP01037585
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2238
2149
-
Ser
CGA
[ENA]
¢þ
>WENV170707960
LNAP01041811
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
9
98
+
Ser
CGA
[ENA]
¢þ
>WENV170708579
LNAP01098942
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8
97
+
Ser
CGA
[ENA]
¢þ
>WENV170712629
LNFM01015687
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
347
258
-
Ser
CGA
[ENA]
¢þ
>WENV170714624
LNFM01088297
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
444
355
-
Ser
CGA
[ENA]
¢þ
>C181019002
CP016278
Betaproteobacteria
Diaphorobacter nitroreducens SL-205 [CP016278]
4036076
4036165
+
Ser
CGA
-
¡û
>C181088995
CP023687
Betaproteobacteria
Paracidovorax citrulli KACC17005 [CP023687]
1569280
1569191
-
Ser
CGA
-
¡û
>C191063805
CP029373
Betaproteobacteria
Paracidovorax citrulli M6 [CP029373]
927329
927240
-
Ser
CGA
-
¡û
>C191099892
CP033069
Betaproteobacteria
Acidovorax sp. 1608163 [CP033069]
3472021
3471932
-
Ser
CGA
-
¡û
>W09105942
AASD01000005
Betaproteobacteria
Acidovorax sp. JS42 [AASD]
132928
133017
+
Ser
CGA
[ENA]
¡û
>W09106104
AASX01000040
Betaproteobacteria
Paracidovorax citrulli subsp. citrulli AAC00-1 [AASX]
29662
29751
+
Ser
CGA
[ENA]
¡û
>W09117942
ACCM01000005
Betaproteobacteria
[Acidovorax] ebreus TPSY [ACCM]
19372
19461
+
Ser
CGA
[ENA]
¡û
>W09133939
ACQT01000215
Betaproteobacteria
Acidovorax delafieldii 2AN [ACQT]
4238
4149
-
Ser
CGA
[ENA]
¡û
>W141701641
JMKU01000026
Betaproteobacteria
Paracidovorax oryzae ATCC 19882 [JMKU]
30040
30129
+
Ser
CGA
[ENA]
¡û
>W1910179213
BJHU01000049
Betaproteobacteria
Acidovorax sp. NB1 [BJHU]
51525
51614
+
Ser
CGA
[ENA]
¡û
>W1910699744
MERV01000005
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_64_960 [MERV]
83936
84025
+
Ser
CGA
[ENA]
¡û
>W1910699800
MERW01000010
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_02_FULL_64_19 [MERW]
20978
21067
+
Ser
CGA
[ENA]
¡û
>W1910699949
MESB01000044
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_65_48 [MESB]
4
93
+
Ser
CGA
[ENA]
¡û
>W1910700259
MESJ01000007
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_33 [MESJ]
12869
12780
-
Ser
CGA
[ENA]
¡û
>C09104064
CP001392
Betaproteobacteria
[Acidovorax] ebreus TPSY [CP001392]
2951039
2950950
-
Ser
CGA
[Ensembl]
¡û
>W1911114339
NOIG01000012
Betaproteobacteria
Acidovorax kalamii KNDSW-TSA6 [NOIG]
13562
13473
-
Ser
CGA
[ENA]
¡û
>W1911647677
QAJR01000002
Betaproteobacteria
Acidovorax sp. FJL06 [QAJR]
11215
11126
-
Ser
CGA
[ENA]
¡û
>W1911768548
QXGR01000007
Betaproteobacteria
Simplicispira lacusdiani CPCC 100842 [QXGR]
126812
126723
-
Ser
CGA
[ENA]
¡û
>W1810071474
PEET01000001
Betaproteobacteria
Acidovorax sp. 59 [PEET]
677441
677530
+
Ser
CGA
[ENA]
¡û
>W1810071610
PEEV01000001
Betaproteobacteria
Acidovorax sp. 56 [PEEV]
4872282
4872371
+
Ser
CGA
[ENA]
¡û
>W1810072461
PEFJ01000001
Betaproteobacteria
Acidovorax sp. 62 [PEFJ]
453649
453738
+
Ser
CGA
[ENA]
¡û
>W1810173357
PJMZ01000001
Betaproteobacteria
Acidovorax sp. 30 [PJMZ]
4276392
4276303
-
Ser
CGA
[ENA]
¡û
>W1810474715
QAIM01000665
Betaproteobacteria
Acidovorax sp. HMWF018 [QAIM]
5781
5870
+
Ser
CGA
[ENA]
¡û
>W1810486286
QAXU01000001
Betaproteobacteria
Acidovorax sp. CF301 [QAXU]
429313
429402
+
Ser
CGA
[ENA]
¡û
>W1810513826
QBTZ01000001
Betaproteobacteria
Acidovorax sp. 107 [QBTZ]
4444390
4444479
+
Ser
CGA
[ENA]
¡û
>W1810573101
QEKM01000001
Betaproteobacteria
Simplicispira sp. 125 [QEKM]
2009807
2009718
-
Ser
CGA
[ENA]
¡û
>W1810573164
QEKN01000001
Betaproteobacteria
Paracidovorax citrulli AAC00-1 #5684 [QEKN]
1166126
1166037
-
Ser
CGA
[ENA]
¡û
>W1810573515
QEKU01000001
Betaproteobacteria
Acidovorax sp. 99 [QEKU]
3346268
3346357
+
Ser
CGA
[ENA]
¡û
>W1810677447
QKMS01000001
Betaproteobacteria
Acidovorax sp. OV235 [QKMS]
567020
566931
-
Ser
CGA
[ENA]
¡û
>W1810683044
QKVP01000002
Betaproteobacteria
Acidovorax sp. ST3 [QKVP]
498391
498302
-
Ser
CGA
[ENA]
¡û
>W1810696157
QLTA01000072
Betaproteobacteria
Paracidovorax anthurii CFPB 3232 [QLTA]
16823
16912
+
Ser
CGA
[ENA]
¡û
>W1810697075
QLTU01000008
Betaproteobacteria
Acidovorax defluvii DSM 12644 [QLTU]
95597
95508
-
Ser
CGA
[ENA]
¡û
>W1810750706
QOZT01000064
Betaproteobacteria
Acidovorax sp. BoFeN1 [QOZT]
17105
17016
-
Ser
CGA
[ENA]
¡û
>W1810884764
QUMV01000001
Betaproteobacteria
Simplicispira sp. 110 [QUMV]
2354064
2353975
-
Ser
CGA
[ENA]
¡û
>W1810885116
QUNC01000001
Betaproteobacteria
Paracidovorax citrulli AAC00-1 #5596 [QUNC]
367974
368063
+
Ser
CGA
[ENA]
¡û
>W1510016547
BBSJ01000020
Betaproteobacteria
Alicycliphilus sp. B1 [BBSJ]
50527
50438
-
Ser
CGA
[ENA]
¡û
>W10110562
ADCB01000039
Betaproteobacteria
Paracidovorax avenae subsp. avenae ATCC 19860 [ADCB]
32471
32560
+
Ser
CGA
[ENA]
¡û
>C11100159
CP002521
Betaproteobacteria
Paracidovorax avenae ATCC 19860 [CP002521]
4225235
4225146
-
Ser
CGA
[Ensembl]
¡û
>C11100623
CP002657
Betaproteobacteria
Alicycliphilus denitrificans K601 [CP002657]
1134494
1134583
+
Ser
CGA
[Ensembl]
¡û
>W11112999
ADCB01000039
Betaproteobacteria
Paracidovorax avenae subsp. avenae ATCC 19860 [ADCB]
32471
32560
+
Ser
CGA
[ENA]
¡û
>W1510742441
CYIG01000047
Betaproteobacteria
Paenacidovorax caeni R-24608 [CYIG]
555
466
-
Ser
CGA
[ENA]
¡û
>W1511390743
JSYI01000032
Betaproteobacteria
Diaphorobacter sp. J5-51 [JSYI]
179630
179719
+
Ser
CGA
[ENA]
¡û
>W1511503055
JXDJ01000017
Betaproteobacteria
Paracidovorax citrulli tw6 [JXDJ]
33703
33614
-
Ser
CGA
[ENA]
¡û
>W1511518953
JXYQ01000070
Betaproteobacteria
Acidovorax temperans KY4 [JXYQ]
26375
26464
+
Ser
CGA
[ENA]
¡û
>W1511527405
JYHM01000011
Betaproteobacteria
Paracidovorax citrulli pslbtw65 [JYHM]
30797
30886
+
Ser
CGA
[ENA]
¡û
>W11155857
AFAL01000573
Betaproteobacteria
Verminephrobacter aporrectodeae At4 [AFAL]
2408
2497
+
Ser
CGA
[ENA]
¡û
>W11156556
AFBG01000020
Betaproteobacteria
Acidovorax radicis N35 [AFBG]
139839
139750
-
Ser
CGA
[ENA]
¡û
>W11156594
AFBH01000018
Betaproteobacteria
Acidovorax radicis N35v [AFBH]
192623
192712
+
Ser
CGA
[ENA]
¡û
>W11170765
AFPT01000075
Betaproteobacteria
Paracidovorax oryzae subsp. avenae RS-1 [AFPT]
15066
14977
-
Ser
CGA
[ENA]
¡û
>W121086404
AKJX01000018
Betaproteobacteria
Acidovorax sp. CF316 [AKJX]
7121
7032
-
Ser
CGA
[ENA]
¡û
>W1610042829
BAZJ01000058
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
3281
3370
+
Ser
CGA
[ENA]
¡û
>C131008662
CP003872
Betaproteobacteria
Acidovorax sp. KKS102 [CP003872]
1229830
1229919
+
Ser
CGA
[Ensembl]
¡û
>W1610623693
LHUP01000124
Betaproteobacteria
Acidovorax sp. SD340 [LHUP]
1176
1265
+
Ser
CGA
[ENA]
¡û
>W1610671428
LKCX01000025
Betaproteobacteria
Curvibacter sp. PAE-UM [LKCX]
18109
18198
+
Ser
CGA
[ENA]
¡û
>W1610686317
LKUW01000088
Betaproteobacteria
Paracidovorax citrulli [LKUW]
232
143
-
Ser
CGA
[ENA]
¡û
>W1610723806
LMDQ01000013
Betaproteobacteria
Acidovorax sp. Root402 [LMDQ]
323975
324064
+
Ser
CGA
[ENA]
¡û
>W1610727717
LMGP01000018
Betaproteobacteria
Acidovorax sp. Root568 [LMGP]
312370
312459
+
Ser
CGA
[ENA]
¡û
>W1610728996
LMHQ01000012
Betaproteobacteria
Acidovorax sp. Root70 [LMHQ]
360826
360915
+
Ser
CGA
[ENA]
¡û
>W1610729804
LMIH01000012
Betaproteobacteria
Acidovorax sp. Root217 [LMIH]
485622
485711
+
Ser
CGA
[ENA]
¡û
>W1610729910
LMIJ01000023
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
57504
57593
+
Ser
CGA
[ENA]
¡û
>W1610730798
LMJC01000001
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
575610
575699
+
Ser
CGA
[ENA]
¡û
>W1610731060
LMJH01000008
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
543694
543605
-
Ser
CGA
[ENA]
¡û
>W1610734733
LMLY01000023
Betaproteobacteria
Acidovorax sp. Leaf76 [LMLY]
523114
523203
+
Ser
CGA
[ENA]
¡û
>W1610734766
LMLZ01000001
Betaproteobacteria
Acidovorax sp. Leaf78 [LMLZ]
333082
333171
+
Ser
CGA
[ENA]
¡û
>W1610734953
LMMC01000023
Betaproteobacteria
Acidovorax sp. Leaf84 [LMMC]
515717
515806
+
Ser
CGA
[ENA]
¡û
>W1610738302
LMOV01000009
Betaproteobacteria
Acidovorax sp. Leaf160 [LMOV]
301
212
-
Ser
CGA
[ENA]
¡û
>W1610739352
LMPT01000018
Betaproteobacteria
Acidovorax sp. Leaf191 [LMPT]
523024
523113
+
Ser
CGA
[ENA]
¡û
>W1610912466
LSIH01000123
Betaproteobacteria
Acidovorax delafieldii [LSIH]
3697
3786
+
Ser
CGA
[ENA]
¡û
>W1610912975
LSIU01000671
Betaproteobacteria
Comamonadaceae bacterium CCH4-C5 [LSIU]
1096
1007
-
Ser
CGA
[ENA]
¡û
>W1610935939
LUKZ01000012
Betaproteobacteria
Acidovorax sp. GW101-3H11 [LUKZ]
381219
381130
-
Ser
CGA
[ENA]
¡û
>W1710039989
BAZJ01000058
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
3281
3370
+
Ser
CGA
[ENA]
¡û
>W1710512059
FMZC01000003
Betaproteobacteria
Paracidovorax valerianellae [FMZC]
174766
174677
-
Ser
CGA
[ENA]
¡û
>W1710519743
FNEY01000046
Betaproteobacteria
Paracidovorax citrulli [FNEY]
28273
28362
+
Ser
CGA
[ENA]
¡û
>W1710525328
FNJL01000044
Betaproteobacteria
Paracidovorax cattleyae [FNJL]
651
562
-
Ser
CGA
[ENA]
¡û
>W1710532526
FNQJ01000019
Betaproteobacteria
Acidovorax soli [FNQJ]
51718
51807
+
Ser
CGA
[ENA]
¡û
>W1710561121
FONX01000003
Betaproteobacteria
Paracidovorax wautersii [FONX]
95697
95608
-
Ser
CGA
[ENA]
¡û
>W1710578887
FPBX01000043
Betaproteobacteria
Paenacidovorax caeni [FPBX]
25083
25172
+
Ser
CGA
[ENA]
¡û
>W1710754783
LHUP01000124
Betaproteobacteria
Acidovorax sp. SD340 [LHUP]
1176
1265
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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