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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45978 (48 seq.)
>W1710854937
LLXX01000090
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
158365
158454
+
Ser
TGA
[ENA]
¡û
>W1710854985
LLXY01000146
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
1386
1297
-
Ser
TGA
[ENA]
¡û
>W1710855013
LLXZ01000012
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
85402
85491
+
Ser
TGA
[ENA]
¡û
>W1710855151
LLYB01000072
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
24590
24501
-
Ser
TGA
[ENA]
¡û
>W1710861426
LMDP01000001
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
1433508
1433419
-
Ser
TGA
[ENA]
¡û
>W1711317194
MAXB01000114
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
53905
53816
-
Ser
TGA
[ENA]
¡û
>W1711317207
MAXC01000009
Alphaproteobacteria
Bradyrhizobium sp. LMTR 3 [MAXC]
96848
96759
-
Ser
TGA
[ENA]
¡û
>W1711505878
MKVX01000018
Alphaproteobacteria
Rhizobiales bacterium 62-47 [MKVX]
812859
812948
+
Ser
TGA
[ENA]
¡û
>C171021104
CP013127
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [CP013127]
5073778
5073867
+
Ser
TGA
-
¡û
>W131227190
AUEZ01000003
Alphaproteobacteria
Bradyrhizobium sp. Ai1a-2 [AUEZ]
210192
210281
+
Ser
TGA
[ENA]
¡û
>C003078
BA000040
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 USDA110 [BA000040]
5014774
5014685
-
Ser
TGA
[Ensembl]
¡û
>W141001295
ADOU01000069
Alphaproteobacteria
Bradyrhizobium diazoefficiens SEMIA 5080 [ADOU]
169478
169389
-
Ser
TGA
[ENA]
¡û
>WENV180304029
OBJH01003172
[OBJH] soil metagenome; soil
492
581
+
Ser
TGA
[ENA]
¢þ
>WENV180308554
OBJR01043121
[OBJR] soil metagenome; soil
124
35
-
Ser
TGA
[ENA]
¢þ
>WENV180331546
OBLA01130954
[OBLA] soil metagenome; Alaskan Permafrost
68
155
+
Ser
TGA
[ENA]
¢þ
>WENV180344856
OBLL01273557
[OBLL] soil metagenome; soil
185
96
-
Ser
TGA
[ENA]
¢þ
>WENV181165239
OEIR01681689
[OEIR] soil metagenome; soil
67
156
+
Ser
TGA
[ENA]
¢þ
>WENV181165697
OEIS01113082
[OEIS] soil metagenome; soil
128
39
-
Ser
TGA
[ENA]
¢þ
>WENV181167029
OEIU01006702
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1343
1254
-
Ser
TGA
[ENA]
¢þ
>WENV181167426
OEIU01028029
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
91
2
-
Ser
TGA
[ENA]
¢þ
>WENV181168239
OEIU01221423
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
91
2
-
Ser
TGA
[ENA]
¢þ
>W141151083
AXAU01000001
Alphaproteobacteria
Bradyrhizobium murdochi WSM1741 [AXAU]
693640
693551
-
Ser
TGA
[ENA]
¡û
>W141151241
AXAX01000011
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [AXAX]
112189
112278
+
Ser
TGA
[ENA]
¡û
>WENV183726189
PJQF01106824
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
179
90
-
Ser
TGA
[ENA]
¢þ
>WENV170551709
CXWJ01018680
[CXWJ] wastewater metagenome; activated sludge
1242
1153
-
Ser
TGA
[ENA]
¢þ
>WENV170705632
LNAP01000036
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5030
5119
+
Ser
TGA
[ENA]
¢þ
>WENV170711030
LNFM01003322
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
31632
31721
+
Ser
TGA
[ENA]
¢þ
>WENV170961905
MLJW01005660
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
156
245
+
Ser
TGA
[ENA]
¢þ
>WENV170998659
MWWJ01071855
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
429
340
-
Ser
TGA
[ENA]
¢þ
>C181181581
CP029603
Alphaproteobacteria
Bradyrhizobium diazoefficiens XF7 [CP029603]
5236670
5236581
-
Ser
TGA
-
¡û
>C191092048
CP032617
Alphaproteobacteria
Bradyrhizobium diazoefficiens 110spc4 [CP032617]
4950418
4950329
-
Ser
TGA
-
¡û
>W141730470
JNIJ01000013
Alphaproteobacteria
Bradyrhizobium sp. URHD0069 [JNIJ]
148284
148195
-
Ser
TGA
[ENA]
¡û
>W1911409814
NWTE01000057
Alphaproteobacteria
Bradyrhizobium diazoefficiens Y21 [NWTE]
8258
8169
-
Ser
TGA
[ENA]
¡û
>W1810089291
PGEQ01000001
Alphaproteobacteria
Bradyrhizobium lablabi GAS165 [PGEQ]
3032846
3032757
-
Ser
TGA
[ENA]
¡û
>W1810089621
PGEV01000001
Alphaproteobacteria
Afipia broomeae GAS525 [PGEV]
1839620
1839709
+
Ser
TGA
[ENA]
¡û
>W1511706689
LGUJ01000008
Alphaproteobacteria
Bradyrhizobium diazoefficiens Is-1 [LGUJ]
169490
169401
-
Ser
TGA
[ENA]
¡û
>C161001034
AP014685
Alphaproteobacteria
Bradyrhizobium diazoefficiens NK6 [AP014685]
8926570
8926659
+
Ser
TGA
-
¡û
>C161034256
CP011360
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 [CP011360]
4334445
4334356
-
Ser
TGA
-
¡û
>C161097215
CP016428
Alphaproteobacteria
Bradyrhizobium icense LMTR 13 [CP016428]
4300663
4300574
-
Ser
TGA
[Ensembl]
¡û
>W121065841
AJQI01000445
Alphaproteobacteria
Bradyrhizobium diazoefficiens CCBAU 41267 [AJQI]
7961
8050
+
Ser
TGA
[ENA]
¡û
>W1610717278
LLXX01000090
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
158365
158454
+
Ser
TGA
[ENA]
¡û
>W1610717326
LLXY01000146
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
1386
1297
-
Ser
TGA
[ENA]
¡û
>W1610717354
LLXZ01000012
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
85402
85491
+
Ser
TGA
[ENA]
¡û
>W1610717492
LLYB01000072
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
24590
24501
-
Ser
TGA
[ENA]
¡û
>W1610723772
LMDP01000001
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
1433508
1433419
-
Ser
TGA
[ENA]
¡û
>W1611061264
MAXB01000114
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
53905
53816
-
Ser
TGA
[ENA]
¡û
>W1611061277
MAXC01000009
Alphaproteobacteria
Bradyrhizobium sp. LMTR 3 [MAXC]
96848
96759
-
Ser
TGA
[ENA]
¡û
>W1710594262
FSRD01000001
Alphaproteobacteria
Bradyrhizobium erythrophlei [FSRD]
7517358
7517269
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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