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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45995 (89 seq.)
>W1710866627
LMHP01000022
Alphaproteobacteria
Mesorhizobium sp. Root172 [LMHP]
272305
272216
-
Ser
TGA
[ENA]
¡û
>W1710989589
LPWA01000131
Alphaproteobacteria
Mesorhizobium loti [LPWA]
98615
98704
+
Ser
TGA
[ENA]
¡û
>W1711257083
LYTJ01000001
Alphaproteobacteria
Mesorhizobium loti [LYTJ]
1395686
1395597
-
Ser
TGA
[ENA]
¡û
>W1711257136
LYTK01000001
Alphaproteobacteria
Mesorhizobium loti [LYTK]
1706533
1706622
+
Ser
TGA
[ENA]
¡û
>W1711257195
LYTL01000010
Alphaproteobacteria
Mesorhizobium loti [LYTL]
2132
2043
-
Ser
TGA
[ENA]
¡û
>W1711286682
LZTH01000044
Alphaproteobacteria
Mesorhizobium loti [LZTH]
291706
291617
-
Ser
TGA
[ENA]
¡û
>W1711286744
LZTI01000029
Alphaproteobacteria
Mesorhizobium loti [LZTI]
55193
55104
-
Ser
TGA
[ENA]
¡û
>W1711286792
LZTJ01000031
Alphaproteobacteria
Mesorhizobium loti [LZTJ]
55193
55104
-
Ser
TGA
[ENA]
¡û
>W1711286835
LZTK01000010
Alphaproteobacteria
Mesorhizobium loti [LZTK]
340689
340778
+
Ser
TGA
[ENA]
¡û
>W1711286894
LZTL01000034
Alphaproteobacteria
Mesorhizobium loti [LZTL]
290896
290807
-
Ser
TGA
[ENA]
¡û
>W1711353153
MDDT01000004
Alphaproteobacteria
Mesorhizobium sp. LCM 4576 [MDDT]
256197
256108
-
Ser
TGA
[ENA]
¡û
>W1711353227
MDDU01000024
Alphaproteobacteria
Mesorhizobium sp. LCM 4577 [MDDU]
170796
170885
+
Ser
TGA
[ENA]
¡û
>W1711361592
MDLH01000001
Alphaproteobacteria
Mesorhizobium sp. SEMIA 3007 [MDLH]
4460199
4460288
+
Ser
TGA
[ENA]
¡û
>W1711384696
MEDI01000227
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
5311
5222
-
Ser
TGA
[ENA]
¡û
>W1711505378
MKVL01000018
Alphaproteobacteria
Mesorhizobium sp. 65-26 [MKVL]
8724
8635
-
Ser
TGA
[ENA]
¡û
>C171037580
CP015318
Alphaproteobacteria
Mesorhizobium amorphae CCNWGS0123 [CP015318]
4113992
4114081
+
Ser
TGA
-
¡û
>W131163229
AQZP01000001
Alphaproteobacteria
Mesorhizobium loti NZP2037 [AQZP]
1677498
1677587
+
Ser
TGA
[ENA]
¡û
>W131219431
ATYO01000028
Alphaproteobacteria
Mesorhizobium sp. WSM3224 [ATYO]
78390
78301
-
Ser
TGA
[ENA]
¡û
>C013685
BA000012
Alphaproteobacteria
Mesorhizobium japonicum MAFF 303099 [BA000012]
347728
347817
+
Ser
TGA
[Ensembl]
¡û
>WENV180020667
FTCZ01008085
[FTCZ] metagenome; soil
4974
4885
-
Ser
TGA
[ENA]
¢þ
>WENV181167226
OEIU01014764
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1912
2001
+
Ser
TGA
[ENA]
¢þ
>WENV181308220
OFIS01000914
[OFIS] sludge metagenome; sludge
722
811
+
Ser
TGA
[ENA]
¢þ
>WENV181402525
OFTY01003318
[OFTY] sludge metagenome; sludge
1663
1574
-
Ser
TGA
[ENA]
¢þ
>W141150192
AXAE01000022
Alphaproteobacteria
Mesorhizobium erdmanii USDA 3471 [AXAE]
56326
56237
-
Ser
TGA
[ENA]
¡û
>W141198970
AYWP01000062
Alphaproteobacteria
Mesorhizobium sp. LNHC232B00 [AYWP]
14896
14985
+
Ser
TGA
[ENA]
¡û
>W141199013
AYWQ01000012
Alphaproteobacteria
Mesorhizobium sp. LNHC229A00 [AYWQ]
95324
95413
+
Ser
TGA
[ENA]
¡û
>W141199040
AYWR01000006
Alphaproteobacteria
Mesorhizobium sp. LNHC221B00 [AYWR]
14025
14114
+
Ser
TGA
[ENA]
¡û
>W141199107
AYWS01000011
Alphaproteobacteria
Mesorhizobium sp. LNHC220B00 [AYWS]
210159
210070
-
Ser
TGA
[ENA]
¡û
>W141199147
AYWT01000008
Alphaproteobacteria
Mesorhizobium sp. LNHC209A00 [AYWT]
10622
10711
+
Ser
TGA
[ENA]
¡û
>W141200945
AZAM01000001
Alphaproteobacteria
Mesorhizobium japonicum R7A [AZAM]
1937919
1938008
+
Ser
TGA
[ENA]
¡û
>W141216510
AZUY01000006
Alphaproteobacteria
Mesorhizobium sp. WSM3626 [AZUY]
150275
150186
-
Ser
TGA
[ENA]
¡û
>W141266680
CCMY01000068
Alphaproteobacteria
Mesorhizobium sp. ORS 3324 ORS3324 [CCMY]
11620
11709
+
Ser
TGA
[ENA]
¡û
>W141266717
CCMZ01000021
Alphaproteobacteria
Mesorhizobium plurifarium [CCMZ]
30380
30291
-
Ser
TGA
[ENA]
¡û
>W141266755
CCNA01000002
Alphaproteobacteria
Mesorhizobium sp. SOD10 [CCNA]
91629
91718
+
Ser
TGA
[ENA]
¡û
>W141266813
CCNB01000006
Alphaproteobacteria
Mesorhizobium plurifarium [CCNB]
95217
95128
-
Ser
TGA
[ENA]
¡û
>W141266863
CCNC01000094
Alphaproteobacteria
Mesorhizobium sp. ORS 3359 ORS3359 [CCNC]
90093
90182
+
Ser
TGA
[ENA]
¡û
>W141266907
CCNE01000020
Alphaproteobacteria
Mesorhizobium plurifarium [CCNE]
80593
80504
-
Ser
TGA
[ENA]
¡û
>C191125544
CP034444
Alphaproteobacteria
Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 [CP034444]
6867762
6867673
-
Ser
TGA
-
¡û
>C191125588
CP034445
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 [CP034445]
6549813
6549902
+
Ser
TGA
-
¡û
>C191125652
CP034446
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.05.1.1 [CP034446]
1851332
1851243
-
Ser
TGA
-
¡û
>C191125694
CP034447
Alphaproteobacteria
Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 [CP034447]
5510669
5510580
-
Ser
TGA
-
¡û
>C191125738
CP034448
Alphaproteobacteria
Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 [CP034448]
5154210
5154299
+
Ser
TGA
-
¡û
>C191125796
CP034449
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 [CP034449]
6556015
6555926
-
Ser
TGA
-
¡û
>C191125818
CP034451
Alphaproteobacteria
Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 [CP034451]
619200
619289
+
Ser
TGA
-
¡û
>W141564260
JIAP01000014
Alphaproteobacteria
Mesorhizobium sp. URHC0008 [JIAP]
152604
152693
+
Ser
TGA
[ENA]
¡û
>W1910550164
FZQR01000016
Alphaproteobacteria
Mesorhizobium carmichaelinearum ICMP 18942 [FZQR]
106866
106955
+
Ser
TGA
[ENA]
¡û
>W1910569046
JHUP01000094
Alphaproteobacteria
Mesorhizobium amorphae CCBAU 01583 [JHUP]
72993
72904
-
Ser
TGA
[ENA]
¡û
>W1910840317
MZXX01000014
Alphaproteobacteria
Mesorhizobium erdmanii Opo-242 [MZXX]
55195
55106
-
Ser
TGA
[ENA]
¡û
>W1911242208
NSFO01000007
Alphaproteobacteria
Mesorhizobium loti R7ANSxCC1192 [NSFO]
292111
292022
-
Ser
TGA
[ENA]
¡û
>W1911242273
NSFP01000015
Alphaproteobacteria
Mesorhizobium loti R7ANSxAA22 [NSFP]
55143
55054
-
Ser
TGA
[ENA]
¡û
>W1911242325
NSFQ01000018
Alphaproteobacteria
Mesorhizobium loti R7ANSx3876 [NSFQ]
55143
55054
-
Ser
TGA
[ENA]
¡û
>W1911242370
NSFR01000021
Alphaproteobacteria
Mesorhizobium loti R7ANSx3859 [NSFR]
55143
55054
-
Ser
TGA
[ENA]
¡û
>W1911242426
NSFS01000016
Alphaproteobacteria
Mesorhizobium loti R7ANSx1497 [NSFS]
55143
55054
-
Ser
TGA
[ENA]
¡û
>W1911242435
NSFT01000001
Alphaproteobacteria
Mesorhizobium sp. WSM4313 [NSFT]
834798
834709
-
Ser
TGA
[ENA]
¡û
>W1911242510
NSFU01000010
Alphaproteobacteria
Mesorhizobium sp. WSM4312 [NSFU]
95623
95712
+
Ser
TGA
[ENA]
¡û
>W1911242567
NSFV01000008
Alphaproteobacteria
Mesorhizobium sp. WSM4311 [NSFV]
204353
204264
-
Ser
TGA
[ENA]
¡û
>W1911242614
NSFW01000013
Alphaproteobacteria
Mesorhizobium sp. WSM4308 [NSFW]
8190
8279
+
Ser
TGA
[ENA]
¡û
>W1911242668
NSFX01000011
Alphaproteobacteria
Mesorhizobium sp. WSM4304 [NSFX]
204734
204645
-
Ser
TGA
[ENA]
¡û
>W1911242803
NSGA01000009
Alphaproteobacteria
Mesorhizobium sp. WSM3876 [NSGA]
150818
150729
-
Ser
TGA
[ENA]
¡û
>W1911243028
NSGF01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3860 [NSGF]
68462
68551
+
Ser
TGA
[ENA]
¡û
>W1911243092
NSGG01000006
Alphaproteobacteria
Mesorhizobium sp. WSM3859 [NSGG]
204650
204561
-
Ser
TGA
[ENA]
¡û
>W1911682412
QKOD01000017
Alphaproteobacteria
Mesorhizobium japonicum Opo-235 [QKOD]
55116
55027
-
Ser
TGA
[ENA]
¡û
>W1911695544
QMBQ01000006
Alphaproteobacteria
Mesorhizobium atlanticum CNPSo 3140 [QMBQ]
102987
103076
+
Ser
TGA
[ENA]
¡û
>W1911824691
QZWZ01000012
Alphaproteobacteria
Mesorhizobium waimense ICMP19557 [QZWZ]
189847
189758
-
Ser
TGA
[ENA]
¡û
>W1911824770
QZXA01000023
Alphaproteobacteria
Mesorhizobium jarvisii LMG 28313 [QZXA]
1435
1346
-
Ser
TGA
[ENA]
¡û
>W1810197105
PNOT01000598
Alphaproteobacteria
Mesorhizobium intechi BD68 [PNOT]
4823
4912
+
Ser
TGA
[ENA]
¡û
>W1810699004
QMBP01000011
Alphaproteobacteria
Mesorhizobium hawassense AC99b [QMBP]
108091
108180
+
Ser
TGA
[ENA]
¡û
>W1810784431
QRAR01000011
Alphaproteobacteria
Mesorhizobium sp. AP09 [QRAR]
482771
482860
+
Ser
TGA
[ENA]
¡û
>W10106951
ACZA01000001
Alphaproteobacteria
Mesorhizobium opportunistum WSM2075 [ACZA]
372955
372866
-
Ser
TGA
[ENA]
¡û
>W11109240
ACZA01000001
Alphaproteobacteria
Mesorhizobium opportunistum WSM2075 [ACZA]
372955
372866
-
Ser
TGA
[ENA]
¡û
>C11114856
CP002279
Alphaproteobacteria
Mesorhizobium opportunistum WSM2075 [CP002279]
4640831
4640742
-
Ser
TGA
[Ensembl]
¡û
>W11181267
AGIX01000011
Alphaproteobacteria
Mesorhizobium australicum WSM2073 [AGIX]
93589
93678
+
Ser
TGA
[ENA]
¡û
>C161003970
CP006581
Alphaproteobacteria
Mesorhizobium huakuii 7653R [CP006581]
2159360
2159449
+
Ser
TGA
[Ensembl]
¡û
>C161093998
CP016079
Alphaproteobacteria
Mesorhizobium loti NZP2037 [CP016079]
4809536
4809447
-
Ser
TGA
-
¡û
>W121018047
AGSN01000019
Alphaproteobacteria
Mesorhizobium amorphae CCNWGS0123 [AGSN]
41016
41105
+
Ser
TGA
[ENA]
¡û
>W1610083666
CCND01000011
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
305663
305574
-
Ser
TGA
[ENA]
¡û
>C131003401
CP003358
Alphaproteobacteria
Mesorhizobium australicum WSM2073 [CP003358]
4217098
4217009
-
Ser
TGA
[Ensembl]
¡û
>W1610728973
LMHP01000022
Alphaproteobacteria
Mesorhizobium sp. Root172 [LMHP]
272305
272216
-
Ser
TGA
[ENA]
¡û
>W1610844465
LPWA01000131
Alphaproteobacteria
Mesorhizobium loti [LPWA]
98615
98704
+
Ser
TGA
[ENA]
¡û
>W1611020059
LYTJ01000001
Alphaproteobacteria
Mesorhizobium loti [LYTJ]
1395686
1395597
-
Ser
TGA
[ENA]
¡û
>W1611020112
LYTK01000001
Alphaproteobacteria
Mesorhizobium loti [LYTK]
1706533
1706622
+
Ser
TGA
[ENA]
¡û
>W1611020171
LYTL01000010
Alphaproteobacteria
Mesorhizobium loti [LYTL]
2132
2043
-
Ser
TGA
[ENA]
¡û
>W1611044243
LZTH01000044
Alphaproteobacteria
Mesorhizobium loti [LZTH]
291706
291617
-
Ser
TGA
[ENA]
¡û
>W1611044305
LZTI01000029
Alphaproteobacteria
Mesorhizobium loti [LZTI]
55193
55104
-
Ser
TGA
[ENA]
¡û
>W1611044353
LZTJ01000031
Alphaproteobacteria
Mesorhizobium loti [LZTJ]
55193
55104
-
Ser
TGA
[ENA]
¡û
>W1611044396
LZTK01000010
Alphaproteobacteria
Mesorhizobium loti [LZTK]
340689
340778
+
Ser
TGA
[ENA]
¡û
>W1611044455
LZTL01000034
Alphaproteobacteria
Mesorhizobium loti [LZTL]
290896
290807
-
Ser
TGA
[ENA]
¡û
>W1710088683
CCND01000011
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
305663
305574
-
Ser
TGA
[ENA]
¡û
>W1710571259
FOVT01000014
Alphaproteobacteria
Mesorhizobium sp. NFR06 [FOVT]
91661
91750
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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