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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45999 (66 seq.)
>W1710785174
LJHQ01000010
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
66917
66828
-
Ser
TGA
[ENA]
¡û
>W1710858011
LMAR01000012
Alphaproteobacteria
Bosea thiooxidans [LMAR]
132730
132641
-
Ser
TGA
[ENA]
¡û
>W1710869473
LMJT01000007
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
97996
97907
-
Ser
TGA
[ENA]
¡û
>W1710869525
LMJU01000015
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
341116
341027
-
Ser
TGA
[ENA]
¡û
>W1710869656
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
882714
882625
-
Ser
TGA
[ENA]
¡û
>W1710879535
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
770230
770141
-
Ser
TGA
[ENA]
¡û
>W1710893351
LNER01000134
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
13469
13558
+
Ser
TGA
[ENA]
¡û
>W1711073116
LSIG01000021
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
9695
9606
-
Ser
TGA
[ENA]
¡û
>W1711073807
LSIY01000060
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
10505
10594
+
Ser
TGA
[ENA]
¡û
>W1711074597
LSJR01000198
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
281
192
-
Ser
TGA
[ENA]
¡û
>W1711074720
LSJU01000474
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
4256
4345
+
Ser
TGA
[ENA]
¡û
>W1711502370
MKSQ01000007
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
157979
158068
+
Ser
TGA
[ENA]
¡û
>C171049985
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
3000886
3000797
-
Ser
TGA
-
¡û
>C171057741
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
4341777
4341866
+
Ser
TGA
-
¡û
>W131166485
ARCM01000005
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
11294
11383
+
Ser
TGA
[ENA]
¡û
>W131175707
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
1245631
1245542
-
Ser
TGA
[ENA]
¡û
>W131222228
AUBC01000004
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
45722
45811
+
Ser
TGA
[ENA]
¡û
>WENV181227449
OFDN01010847
[OFDN] hot springs metagenome; Water
2568
2479
-
Ser
TGA
[ENA]
¢þ
>W141151360
AXBA01000001
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
226608
226697
+
Ser
TGA
[ENA]
¡û
>C08000334
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
2487298
2487212
-
Ser
TGA
[Ensembl]
¡û
>W141241677
CAHM01000037
Alphaproteobacteria
Microvirga massiliensis JC119 [CAHM]
8616
8705
+
Ser
TGA
[ENA]
¡û
>WENV183749850
PPFU01221394
[PPFU] hypolithon metagenome; Antarctic Hypolithon
298
209
-
Ser
TGA
[ENA]
¢þ
>WENV170009819
APMI01003472
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1169
1258
+
Ser
TGA
[ENA]
¢þ
>WENV170011981
APMI01107984
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
962
1051
+
Ser
TGA
[ENA]
¢þ
>WENV170680775
LFEF01020937
[LFEF] freshwater metagenome; waterbloom
5230
5141
-
Ser
TGA
[ENA]
¢þ
>WENV170712354
LNFM01012325
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
6897
6986
+
Ser
TGA
[ENA]
¢þ
>WENV171003184
NNBT01002185
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
23373
23284
-
Ser
TGA
[ENA]
¢þ
>WENV171003751
NNBV01000600
[NNBV] plant metagenome; symbiotic tissue sample KVS11
127616
127705
+
Ser
TGA
[ENA]
¢þ
>C181063193
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
2951924
2952013
+
Ser
TGA
-
¡û
>C191014004
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
1245390
1245479
+
Ser
TGA
-
¡û
>C191152099
CP036515
Alphaproteobacteria
Lichenihabitans psoromatis PAMC 29148 [CP036515]
3469494
3469405
-
Ser
TGA
-
¡û
>W141733763
JNLC01000017
Alphaproteobacteria
Bosea sp. 117 [JNLC]
152526
152615
+
Ser
TGA
[ENA]
¡û
>W141805299
JPKG01000034
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
17830
17919
+
Ser
TGA
[ENA]
¡û
>W141815811
JQJJ01000011
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
9879
9968
+
Ser
TGA
[ENA]
¡û
>W1910232067
FPEJ01000013
Alphaproteobacteria
Hyphomicrobium sp. NDB2Meth4 [FPEJ]
689763
689674
-
Ser
TGA
[ENA]
¡û
>W1910501743
FYAS01000054
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
23183
23272
+
Ser
TGA
[ENA]
¡û
>W1910635402
LNCQ01000022
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
516439
516350
-
Ser
TGA
[ENA]
¡û
>W1910840130
MZXT01000010
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
827391
827480
+
Ser
TGA
[ENA]
¡û
>W1910840181
MZXU01000017
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
1823968
1824057
+
Ser
TGA
[ENA]
¡û
>W1910847630
NBDP01000003
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
838790
838879
+
Ser
TGA
[ENA]
¡û
>W1810251993
PQFZ01000002
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
197342
197431
+
Ser
TGA
[ENA]
¡û
>W1810273168
PSNV01000004
Alphaproteobacteria
Kaistia algarum LYH11 [PSNV]
27804
27715
-
Ser
TGA
[ENA]
¡û
>W1810463374
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
4672037
4671948
-
Ser
TGA
[ENA]
¡û
>W1810676902
QKMI01000008
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
334386
334297
-
Ser
TGA
[ENA]
¡û
>W1510081366
CDSD01000048
Alphaproteobacteria
Microvirga massiliensis JC119 [CDSD]
8615
8704
+
Ser
TGA
[ENA]
¡û
>W1511353009
JROW01000100
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
2543
2454
-
Ser
TGA
[ENA]
¡û
>W1610617186
LGSZ01000060
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
100653
100742
+
Ser
TGA
[ENA]
¡û
>W1610648980
LJHQ01000010
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
66917
66828
-
Ser
TGA
[ENA]
¡û
>W1610720357
LMAR01000012
Alphaproteobacteria
Bosea thiooxidans [LMAR]
132730
132641
-
Ser
TGA
[ENA]
¡û
>W1610731819
LMJT01000007
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
97996
97907
-
Ser
TGA
[ENA]
¡û
>W1610731871
LMJU01000015
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
341116
341027
-
Ser
TGA
[ENA]
¡û
>W1610732002
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
882714
882625
-
Ser
TGA
[ENA]
¡û
>W1610741881
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
770230
770141
-
Ser
TGA
[ENA]
¡û
>W1610753617
LNER01000134
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
13469
13558
+
Ser
TGA
[ENA]
¡û
>W1610912421
LSIG01000021
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
9695
9606
-
Ser
TGA
[ENA]
¡û
>W1610913112
LSIY01000060
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
10505
10594
+
Ser
TGA
[ENA]
¡û
>W1610913902
LSJR01000198
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
281
192
-
Ser
TGA
[ENA]
¡û
>W1610914025
LSJU01000474
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
4256
4345
+
Ser
TGA
[ENA]
¡û
>W1710064198
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
5095445
5095356
-
Ser
TGA
[ENA]
¡û
>W1710505294
FMTP01000001
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
980678
980589
-
Ser
TGA
[ENA]
¡û
>W1710515704
FNBZ01000006
Alphaproteobacteria
Bosea robiniae [FNBZ]
288439
288528
+
Ser
TGA
[ENA]
¡û
>W1710544003
FOAN01000001
Alphaproteobacteria
Bosea lupini [FOAN]
258581
258670
+
Ser
TGA
[ENA]
¡û
>W1710556975
FOKP01000001
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
274051
273962
-
Ser
TGA
[ENA]
¡û
>W1710564897
FOQV01000001
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
907908
907997
+
Ser
TGA
[ENA]
¡û
>W1710596436
FTMO01000003
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
113841
113930
+
Ser
TGA
[ENA]
¡û
>W1710742800
LGSZ01000060
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
100653
100742
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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