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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460422 (58 seq.)
>W1711047344
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
823724
823799
+
Val
TAC
[ENA]
¡û
>W1711047368
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
686630
686555
-
Val
TAC
[ENA]
¡û
>C171097763
CP019650
Gammaproteobacteria
Microbulbifer agarilyticus GP101 [CP019650]
1838992
1839067
+
Val
TAC
-
¡û
>C171097789
CP019650
Gammaproteobacteria
Microbulbifer agarilyticus GP101 [CP019650]
1673778
1673703
-
Val
TAC
-
¡û
>C171103078
CP020038
Gammaproteobacteria
Agarilytica rhodophyticola 017 [CP020038]
3974872
3974947
+
Val
TAC
-
¡û
>C171103091
CP020038
Gammaproteobacteria
Agarilytica rhodophyticola 017 [CP020038]
4233605
4233530
-
Val
TAC
-
¡û
>W131214999
ATUQ01000005
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [ATUQ]
336533
336608
+
Val
TAC
[ENA]
¡û
>W131215004
ATUQ01000005
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [ATUQ]
206270
206195
-
Val
TAC
[ENA]
¡û
>W131215020
ATUQ01000015
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [ATUQ]
9
84
+
Val
TAC
[ENA]
¡û
>C020880
CP000282
Gammaproteobacteria
Saccharophagus degradans 2-40 [CP000282]
2202711
2202786
+
Val
TAC
[Ensembl]
¡û
>C020896
CP000282
Gammaproteobacteria
Saccharophagus degradans 2-40 [CP000282]
2367819
2367744
-
Val
TAC
[Ensembl]
¡û
>WENV181321030
OFKJ01016016
[OFKJ] marine metagenome; sea ice
281
206
-
Val
TAC
[ENA]
¢þ
>WENV181322480
OFKR01019577
[OFKR] marine metagenome; sea ice
195
270
+
Val
TAC
[ENA]
¢þ
>WENV183617381
OOEE01216493
[OOEE] marine metagenome; sea ice
173
98
-
Val
TAC
[ENA]
¢þ
>WENV183621595
OOFU01012828
[OOFU] marine metagenome; sea ice
558
633
+
Val
TAC
[ENA]
¢þ
>WENV183622798
OOFW01011209
[OOFW] marine metagenome; sea ice
514
589
+
Val
TAC
[ENA]
¢þ
>WENV183623678
OOGA01034903
[OOGA] marine metagenome; sea ice
518
443
-
Val
TAC
[ENA]
¢þ
>WENV183624386
OOGD01005315
[OOGD] marine metagenome; sea ice
655
580
-
Val
TAC
[ENA]
¢þ
>WENV183624772
OOGE01007844
[OOGE] marine metagenome; sea ice
669
744
+
Val
TAC
[ENA]
¢þ
>WENV183628600
OOGO01002845
[OOGO] marine metagenome; sea ice
901
976
+
Val
TAC
[ENA]
¢þ
>WENV183630959
OOGU01012999
[OOGU] marine metagenome; sea ice
515
590
+
Val
TAC
[ENA]
¢þ
>W141425775
JELR01000001
Gammaproteobacteria
Microbulbifer sp. HZ11 [JELR]
1058165
1058240
+
Val
TAC
[ENA]
¡û
>W141425790
JELR01000001
Gammaproteobacteria
Microbulbifer sp. HZ11 [JELR]
887311
887236
-
Val
TAC
[ENA]
¡û
>WENV170569251
FLMP01156726
[FLMP] seawater metagenome; seawater
93
18
-
Val
TAC
[ENA]
¢þ
>WENV170569366
FLMP01183146
[FLMP] seawater metagenome; seawater
255
180
-
Val
TAC
[ENA]
¢þ
>WENV170647469
JQIA01029384
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
166
91
-
Val
TAC
[ENA]
¢þ
>WENV170782034
MAAC01006660
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3581
3506
-
Val
TAC
[ENA]
¢þ
>W09100568
AABI03000002
Gammaproteobacteria
Saccharophagus degradans 2-40 [AABI]
40132
40057
-
Val
TAC
[ENA]
¡û
>W09100576
AABI03000006
Gammaproteobacteria
Saccharophagus degradans 2-40 [AABI]
203564
203489
-
Val
TAC
[ENA]
¡û
>WENV170827631
MDSY01133258
[MDSY] marine metagenome; seawater
126
51
-
Val
TAC
[ENA]
¢þ
>W1911138208
NOXC01000008
Gammaproteobacteria
Cellvibrionaceae bacterium AOL6 [NOXC]
82531
82606
+
Val
TAC
[ENA]
¡û
>W1911138211
NOXC01000008
Gammaproteobacteria
Cellvibrionaceae bacterium AOL6 [NOXC]
163037
162962
-
Val
TAC
[ENA]
¡û
>W1810270723
PREV01000027
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
904328
904403
+
Val
TAC
[ENA]
¡û
>W1810270737
PREV01000027
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
736167
736092
-
Val
TAC
[ENA]
¡û
>W1810270739
PREV01000027
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
735712
735637
-
Val
TAC
[ENA]
¡û
>W1510865145
JDFY01000001
Gammaproteobacteria
Teredinibacter purpureus Bs12 [JDFY]
3177149
3177224
+
Val
TAC
[ENA]
¡û
>W1510865147
JDFY01000001
Gammaproteobacteria
Teredinibacter purpureus Bs12 [JDFY]
3385187
3385262
+
Val
TAC
[ENA]
¡û
>W11170305
AFPJ01000016
Gammaproteobacteria
Microbulbifer agarilyticus S89 [AFPJ]
53129
53204
+
Val
TAC
[ENA]
¡û
>W11170324
AFPJ01000036
Gammaproteobacteria
Microbulbifer agarilyticus S89 [AFPJ]
165797
165722
-
Val
TAC
[ENA]
¡û
>WENV071378
AACY023844988
Marine microbial communities from Global Ocean Sampling (GOS)
787
862
+
Val
TAC
[ENA]
>C131006097
CP003746
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [CP003746]
67110
67035
-
Val
TAC
[Ensembl]
¡û
>W1610610045
LFYV01000010
Gammaproteobacteria
Marinagarivorans algicola [LFYV]
51479
51404
-
Val
TAC
[ENA]
¡û
>W1610610047
LFYV01000010
Gammaproteobacteria
Marinagarivorans algicola [LFYV]
51139
51064
-
Val
TAC
[ENA]
¡û
>W1610610057
LFYV01000021
Gammaproteobacteria
Marinagarivorans algicola [LFYV]
66159
66234
+
Val
TAC
[ENA]
¡û
>W1610610314
LGAK01000003
Gammaproteobacteria
Marinagarivorans algicola [LGAK]
98375
98450
+
Val
TAC
[ENA]
¡û
>W1610610324
LGAK01000009
Gammaproteobacteria
Marinagarivorans algicola [LGAK]
117346
117421
+
Val
TAC
[ENA]
¡û
>W1610610326
LGAK01000009
Gammaproteobacteria
Marinagarivorans algicola [LGAK]
117685
117760
+
Val
TAC
[ENA]
¡û
>W1610888473
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
823724
823799
+
Val
TAC
[ENA]
¡û
>W1610888497
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
686630
686555
-
Val
TAC
[ENA]
¡û
>W1710583719
FQVA01000006
Gammaproteobacteria
Microbulbifer donghaiensis [FQVA]
1976
1901
-
Val
TAC
[ENA]
¡û
>W1710583721
FQVA01000006
Gammaproteobacteria
Microbulbifer donghaiensis [FQVA]
87
12
-
Val
TAC
[ENA]
¡û
>W1710583739
FQVA01000010
Gammaproteobacteria
Microbulbifer donghaiensis [FQVA]
859
784
-
Val
TAC
[ENA]
¡û
>W1710731390
LFYV01000010
Gammaproteobacteria
Marinagarivorans algicola [LFYV]
51479
51404
-
Val
TAC
[ENA]
¡û
>W1710731392
LFYV01000010
Gammaproteobacteria
Marinagarivorans algicola [LFYV]
51139
51064
-
Val
TAC
[ENA]
¡û
>W1710731402
LFYV01000021
Gammaproteobacteria
Marinagarivorans algicola [LFYV]
66159
66234
+
Val
TAC
[ENA]
¡û
>W1710731820
LGAK01000003
Gammaproteobacteria
Marinagarivorans algicola [LGAK]
98375
98450
+
Val
TAC
[ENA]
¡û
>W1710731830
LGAK01000009
Gammaproteobacteria
Marinagarivorans algicola [LGAK]
117346
117421
+
Val
TAC
[ENA]
¡û
>W1710731832
LGAK01000009
Gammaproteobacteria
Marinagarivorans algicola [LGAK]
117685
117760
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK