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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46044 (54 seq.)
>W1711055186
LRUK01000002
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
127802
127713
-
Ser
TGA
[ENA]
¡û
>W1711089873
LTAB01000001
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
301765
301676
-
Ser
TGA
[ENA]
¡û
>W1711250013
LYMJ01000001
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
127807
127718
-
Ser
TGA
[ENA]
¡û
>W1711253286
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
1368093
1368182
+
Ser
TGA
[ENA]
¡û
>W1711261707
LYWZ01000011
Alphaproteobacteria
Croceicoccus mobilis [LYWZ]
107644
107733
+
Ser
TGA
[ENA]
¡û
>C171019695
CP013070
Alphaproteobacteria
Sphingobium indicum B90A [CP013070]
1338059
1338148
+
Ser
TGA
-
¡û
>C171096154
CP019602
Alphaproteobacteria
Croceicoccus marinus E4A9 [CP019602]
1368093
1368182
+
Ser
TGA
-
¡û
>W131196358
ASTG01000013
Alphaproteobacteria
Sphingobium bisphenolivorans YL23 [ASTG]
30205
30294
+
Ser
TGA
[ENA]
¡û
>W131224749
AUDA01000210
Alphaproteobacteria
Sphingobium indicum IP26 [AUDA]
206332
206421
+
Ser
TGA
[ENA]
¡û
>WENV180020791
FTDB01001891
[FTDB] metagenome; soil
9259
9348
+
Ser
TGA
[ENA]
¢þ
>W141076282
ATDO01000078
Alphaproteobacteria
Sphingobium sp. HDIP04 [ATDO]
133933
134022
+
Ser
TGA
[ENA]
¡û
>W141078085
ATHO01000009
Alphaproteobacteria
Sphingobium quisquiliarum P25 [ATHO]
74177
74088
-
Ser
TGA
[ENA]
¡û
>W141231023
BATN01000030
Alphaproteobacteria
Sphingobium fuliginis KK22 [BATN]
28670
28759
+
Ser
TGA
[ENA]
¡û
>W141285073
JANF02000027
Alphaproteobacteria
Sphingobium indicum F2 [JANF]
1240
1151
-
Ser
TGA
[ENA]
¡û
>WENV183727007
PJTO01001674
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
3321
3410
+
Ser
TGA
[ENA]
¢þ
>WENV183727462
PJTP01000002
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
197471
197382
-
Ser
TGA
[ENA]
¢þ
>WENV183728257
PJTQ01000005
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
197471
197382
-
Ser
TGA
[ENA]
¢þ
>WENV183736726
PJUD01000004
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
197471
197382
-
Ser
TGA
[ENA]
¢þ
>WENV183738504
PJUE01000006
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
197471
197382
-
Ser
TGA
[ENA]
¢þ
>WENV183739754
PJUF01000005
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
197471
197382
-
Ser
TGA
[ENA]
¢þ
>WENV170173262
CEOQ01193434
[CEOQ] marine metagenome genome assembly TARA_034_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1100
1011
-
Ser
TGA
[ENA]
¢þ
>W141400535
JDRU02000266
Alphaproteobacteria
Sphingomonas sp. BHC-A [JDRU]
473
562
+
Ser
TGA
[ENA]
¡û
>WENV170307961
CESK01037698
[CESK] marine metagenome genome assembly TARA_078_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1940
2029
+
Ser
TGA
[ENA]
¢þ
>WENV170371615
CETS01024772
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
783
694
-
Ser
TGA
[ENA]
¢þ
>WENV170842016
MDSZ01232338
[MDSZ] marine metagenome; seawater
10593
10504
-
Ser
TGA
[ENA]
¢þ
>WENV170859588
MDTB01038281
[MDTB] marine metagenome; seawater
16014
16103
+
Ser
TGA
[ENA]
¢þ
>WENV170913060
MDTE01129357
[MDTE] marine metagenome; seawater
531737
531648
-
Ser
TGA
[ENA]
¢þ
>WENV170928728
MDTG01138692
[MDTG] marine metagenome; seawater
21261
21172
-
Ser
TGA
[ENA]
¢þ
>C191155778
CP037948
Alphaproteobacteria
Qipengyuania sediminis CGMCC 1.12928 [CP037948]
819477
819388
-
Ser
TGA
-
¡û
>C191185564
CP041016
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
1519345
1519256
-
Ser
TGA
-
¡û
>C141006095
CP006644
Alphaproteobacteria
Sphingomonas sanxanigenens DSM 19645 = NX02 [CP006644]
2435205
2435294
+
Ser
TGA
[Ensembl]
¡û
>W1910549102
FZPA01000001
Alphaproteobacteria
Sphingopyxis indica DS15 [FZPA]
814709
814621
-
Ser
TGA
[ENA]
¡û
>W1910649281
LXYF01000022
Alphaproteobacteria
Sphingobium sp. SA916 [LXYF]
58031
58120
+
Ser
TGA
[ENA]
¡û
>W1810000459
BEWI01000031
Alphaproteobacteria
Sphingobium fuliginis OMI [BEWI]
810712
810801
+
Ser
TGA
[ENA]
¡û
>W1810784989
QRBB01000001
Alphaproteobacteria
Alteriqipengyuania lutimaris S-5 [QRBB]
2254342
2254253
-
Ser
TGA
[ENA]
¡û
>C151074567
CP010954
Alphaproteobacteria
Sphingobium sp. YBL2 [CP010954]
4077073
4076984
-
Ser
TGA
[Ensembl]
¡û
>W1510019402
BBWU01000016
Alphaproteobacteria
Sphingomonas changbaiensis NBRC 104936 [BBWU]
49978
50067
+
Ser
TGA
[ENA]
¡û
>C10111691
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
1656691
1656602
-
Ser
TGA
[Ensembl]
¡û
>W1511398340
JTDN01000001
Alphaproteobacteria
Croceibacterium mercuriale Coronado [JTDN]
1059837
1059926
+
Ser
TGA
[ENA]
¡û
>C11121262
AP012222
Alphaproteobacteria
Sphingobium sp. SYK-6 [AP012222]
2225487
2225576
+
Ser
TGA
[Ensembl]
¡û
>W11149026
AEUE01000006
Alphaproteobacteria
Citromicrobium sp. JLT1363 [AEUE]
134197
134286
+
Ser
TGA
[ENA]
¡û
>W1511646479
LECE01000066
Alphaproteobacteria
Sphingomonas sp. MEA3-1 [LECE]
2601
2690
+
Ser
TGA
[ENA]
¡û
>W121071175
AJXQ01000148
Alphaproteobacteria
Sphingobium indicum B90A [AJXQ]
89984
89895
-
Ser
TGA
[ENA]
¡û
>W1610071247
BCTX01000055
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
24386
24297
-
Ser
TGA
[ENA]
¡û
>W1610576235
LAPS01000007
Alphaproteobacteria
Citromicrobium sp. WPS32 [LAPS]
72141
72230
+
Ser
TGA
[ENA]
¡û
>W1610609167
LFVX01000036
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
9248
9337
+
Ser
TGA
[ENA]
¡û
>W1610896232
LRUK01000002
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
127802
127713
-
Ser
TGA
[ENA]
¡û
>W1610924217
LTAB01000001
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
301765
301676
-
Ser
TGA
[ENA]
¡û
>W1611016895
LYMJ01000001
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
127807
127718
-
Ser
TGA
[ENA]
¡û
>W1611017823
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
1368093
1368182
+
Ser
TGA
[ENA]
¡û
>W1611023682
LYWZ01000011
Alphaproteobacteria
Croceicoccus mobilis [LYWZ]
107644
107733
+
Ser
TGA
[ENA]
¡û
>W1710068612
BCTX01000055
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
24386
24297
-
Ser
TGA
[ENA]
¡û
>W1710694597
LAPS01000007
Alphaproteobacteria
Citromicrobium sp. WPS32 [LAPS]
72141
72230
+
Ser
TGA
[ENA]
¡û
>W1710730454
LFVX01000036
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
9248
9337
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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