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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460599 (38 seq.)
>W1712038223
NFIT01000006
Actinomycetota
Olsenella sp. An293 [NFIT]
34027
34102
+
Ala
GGC
[ENA]
¡û
>W1712038225
NFIT01000006
Actinomycetota
Olsenella sp. An293 [NFIT]
37465
37390
-
Ala
GGC
[ENA]
¡û
>W1712038251
NFIU01000002
Actinomycetota
Olsenella sp. An290 [NFIU]
4671
4746
+
Ala
GGC
[ENA]
¡û
>W1712038268
NFIU01000005
Actinomycetota
Olsenella sp. An290 [NFIU]
123268
123343
+
Ala
GGC
[ENA]
¡û
>W1712038500
NFIZ01000009
Actinomycetota
Olsenella sp. An285 [NFIZ]
73834
73909
+
Ala
GGC
[ENA]
¡û
>W1712038503
NFIZ01000009
Actinomycetota
Olsenella sp. An285 [NFIZ]
76159
76234
+
Ala
GGC
[ENA]
¡û
>W1712038811
NFJF01000001
Actinomycetota
Olsenella sp. An270 [NFJF]
398157
398232
+
Ala
GGC
[ENA]
¡û
>W1712038814
NFJF01000001
Actinomycetota
Olsenella sp. An270 [NFJF]
398870
398945
+
Ala
GGC
[ENA]
¡û
>W1712040208
NFKF01000001
Actinomycetota
Olsenella sp. An188 [NFKF]
109026
109101
+
Ala
GGC
[ENA]
¡û
>W1712040218
NFKF01000001
Actinomycetota
Olsenella sp. An188 [NFKF]
102661
102586
-
Ala
GGC
[ENA]
¡û
>C171130095
LT635455
Actinomycetota
Olsenella timonensis Marseille-P2300 [LT635455]
1023035
1023110
+
Ala
GGC
-
¡û
>C171130129
LT635455
Actinomycetota
Olsenella timonensis Marseille-P2300 [LT635455]
1022682
1022607
-
Ala
GGC
-
¡û
>WENV180483789
OBZH01002662
[OBZH] human gut metagenome; faeces
3949
3874
-
Ala
GGC
[ENA]
¢þ
>WENV180483790
OBZH01002662
[OBZH] human gut metagenome; faeces
3758
3683
-
Ala
GGC
[ENA]
¢þ
>WENV180483793
OBZH01002662
[OBZH] human gut metagenome; faeces
2025
1950
-
Ala
GGC
[ENA]
¢þ
>WENV181691658
OGOZ01014775
[OGOZ] human gut metagenome; faeces
557
482
-
Ala
GGC
[ENA]
¢þ
>WENV181723655
OGPW01012764
[OGPW] human gut metagenome; faeces
2320
2395
+
Ala
GGC
[ENA]
¢þ
>WENV181897159
OGXS01040223
[OGXS] human gut metagenome; faeces
303
378
+
Ala
GGC
[ENA]
¢þ
>WENV182873630
OKRW01000893
[OKRW] human gut metagenome; faeces
26612
26687
+
Ala
GGC
[ENA]
¢þ
>WENV183097170
OLNE01000987
[OLNE] human gut metagenome; faeces
1795
1870
+
Ala
GGC
[ENA]
¢þ
>WENV183108279
OLNN01000032
[OLNN] human gut metagenome; faeces
55024
54949
-
Ala
GGC
[ENA]
¢þ
>WENV183108282
OLNN01000032
[OLNN] human gut metagenome; faeces
53292
53217
-
Ala
GGC
[ENA]
¢þ
>WENV183146226
OLOM01004814
[OLOM] human gut metagenome; faeces
4636
4561
-
Ala
GGC
[ENA]
¢þ
>WENV183484366
OMFO01025345
[OMFO] human gut metagenome; feces
521
596
+
Ala
GGC
[ENA]
¢þ
>WENV183551991
OOBJ01000382
[OOBJ] human gut metagenome; human gut
36734
36809
+
Ala
GGC
[ENA]
¢þ
>WENV183602340
OODJ01038808
[OODJ] human gut metagenome; human gut
97
22
-
Ala
GGC
[ENA]
¢þ
>WENV170635867
JFBN01010796
[JFBN] chicken gut metagenome; ceca of Broiler chicken
1404
1329
-
Ala
GGC
[ENA]
¢þ
>WENV170636084
JFBN01033638
[JFBN] chicken gut metagenome; ceca of Broiler chicken
1421
1346
-
Ala
GGC
[ENA]
¢þ
>C191007331
AP019367
Actinomycetota
Parolsenella catena JCM 31932 [AP019367]
897546
897471
-
Ala
GGC
-
¡û
>C191007332
AP019367
Actinomycetota
Parolsenella catena JCM 31932 [AP019367]
897355
897280
-
Ala
GGC
-
¡û
>C191007335
AP019367
Actinomycetota
Parolsenella catena JCM 31932 [AP019367]
895625
895550
-
Ala
GGC
-
¡û
>W1910237171
FPKO01000008
Actinomycetota
Thermophilibacter mediterraneus Marseille-P3256 [FPKO]
76819
76894
+
Ala
GGC
[ENA]
¡û
>W1910237174
FPKO01000008
Actinomycetota
Thermophilibacter mediterraneus Marseille-P3256 [FPKO]
81432
81507
+
Ala
GGC
[ENA]
¡û
>W1910281414
FQTO01000004
Actinomycetota
Thermophilibacter provencensis Marseille-P2912 [FQTO]
989016
989091
+
Ala
GGC
[ENA]
¡û
>W1910281418
FQTO01000004
Actinomycetota
Thermophilibacter provencensis Marseille-P2912 [FQTO]
987931
987856
-
Ala
GGC
[ENA]
¡û
>W1710540422
FNWT01000006
Actinomycetota
Parafannyhessea umbonata [FNWT]
3197
3122
-
Ala
GGC
[ENA]
¡û
>W1710552087
FOGP01000002
Actinomycetota
Parafannyhessea umbonata [FOGP]
8979
8904
-
Ala
GGC
[ENA]
¡û
>W1710600608
FUWQ01000002
Actinomycetota
Olsenella sp. KH1P3 KH1P3 [FUWQ]
2968
2893
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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