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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460690 (46 seq.)
>W1711511831
MLCS01000102
Gammaproteobacteria
Pseudomonas lundensis BS-2016 [MLCS]
19714
19789
+
Thr
TGT
[ENA]
¡û
>W1712004928
NEHE01000011
Gammaproteobacteria
Pseudomonas sp. R5(2017) [NEHE]
57812
57887
+
Thr
TGT
[ENA]
¡û
>W1712004967
NEHF01000009
Gammaproteobacteria
Pseudomonas sp. R4(2017) [NEHF]
213025
212950
-
Thr
TGT
[ENA]
¡û
>W1712005161
NEHI01000009
Gammaproteobacteria
Pseudomonas sp. R44(2017) [NEHI]
57832
57907
+
Thr
TGT
[ENA]
¡û
>W1712005959
NEHV01000009
Gammaproteobacteria
Pseudomonas sp. R29(2017) [NEHV]
57832
57907
+
Thr
TGT
[ENA]
¡û
>W1712006086
NEHX01000009
Gammaproteobacteria
Pseudomonas sp. R27(2017) [NEHX]
57832
57907
+
Thr
TGT
[ENA]
¡û
>W1712006143
NEHY01000015
Gammaproteobacteria
Pseudomonas sp. R26(2017) [NEHY]
690
615
-
Thr
TGT
[ENA]
¡û
>W1712006197
NEHZ01000009
Gammaproteobacteria
Pseudomonas sp. R25(2017) [NEHZ]
57832
57907
+
Thr
TGT
[ENA]
¡û
>W1712006448
NEID01000012
Gammaproteobacteria
Pseudomonas sp. R21(2017) [NEID]
57832
57907
+
Thr
TGT
[ENA]
¡û
>W1712006498
NEIE01000009
Gammaproteobacteria
Pseudomonas sp. R20(2017) [NEIE]
57832
57907
+
Thr
TGT
[ENA]
¡û
>W1712006557
NEIF01000009
Gammaproteobacteria
Pseudomonas sp. R19(2017) [NEIF]
57832
57907
+
Thr
TGT
[ENA]
¡û
>W1712006681
NEIH01000008
Gammaproteobacteria
Pseudomonas sp. R16(2017) [NEIH]
213056
212981
-
Thr
TGT
[ENA]
¡û
>W1712006866
NEIK01000011
Gammaproteobacteria
Pseudomonas sp. R12(2017) [NEIK]
57832
57907
+
Thr
TGT
[ENA]
¡û
>W1712007187
NEIP01000009
Gammaproteobacteria
Pseudomonas sp. B7(2017) [NEIP]
57827
57902
+
Thr
TGT
[ENA]
¡û
>W1712007217
NEIQ01000003
Gammaproteobacteria
Pseudomonas sp. B6(2017) [NEIQ]
445681
445756
+
Thr
TGT
[ENA]
¡û
>W1712007501
NEIU01000010
Gammaproteobacteria
Pseudomonas sp. B3(2017) [NEIU]
57812
57887
+
Thr
TGT
[ENA]
¡û
>W1712007806
NEIZ01000007
Gammaproteobacteria
Pseudomonas sp. B35(2017) [NEIZ]
187284
187209
-
Thr
TGT
[ENA]
¡û
>W1712008165
NEJF01000006
Gammaproteobacteria
Pseudomonas sp. B2(2017) [NEJF]
57827
57902
+
Thr
TGT
[ENA]
¡û
>W1712009196
NEJV01000027
Gammaproteobacteria
Pseudomonas sp. B11(2017) [NEJV]
57835
57910
+
Thr
TGT
[ENA]
¡û
>W141076046
ATBG01000040
Gammaproteobacteria
Pseudomonas chlororaphis HT66 [ATBG]
431433
431508
+
Thr
TGT
[ENA]
¡û
>WENV170559845
CXWL01160483
[CXWL] groundwater metagenome; biofilm material
1568
1643
+
Thr
TGT
[ENA]
¢þ
>WENV170708431
LNAP01081262
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
42
117
+
Thr
TGT
[ENA]
¢þ
>C191052169
CP027710
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium SLPH10 [CP027710]
392386
392311
-
Thr
TGT
-
¡û
>C191052494
CP027715
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca M12 [CP027715]
390190
390115
-
Thr
TGT
-
¡û
>C191053821
CP027735
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium DTR133 [CP027735]
389241
389166
-
Thr
TGT
-
¡û
>C191053951
CP027737
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium PCL1607 [CP027737]
387484
387409
-
Thr
TGT
-
¡û
>C191054016
CP027738
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ChPhzS135 [CP027738]
391671
391596
-
Thr
TGT
-
¡û
>C191054081
CP027739
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ToZa7 [CP027739]
392307
392232
-
Thr
TGT
-
¡û
>C191054146
CP027740
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ChPhzS140 [CP027740]
390876
390801
-
Thr
TGT
-
¡û
>W1910751523
MJML01000054
Gammaproteobacteria
Pseudomonas sp. AF76 [MJML]
156272
156347
+
Thr
TGT
[ENA]
¡û
>W1810675648
QKLL01000003
Gammaproteobacteria
Pseudomonas sp. TKO30 [QKLL]
196048
195973
-
Thr
TGT
[ENA]
¡û
>W1810675710
QKLM01000003
Gammaproteobacteria
Pseudomonas sp. TKO29 [QKLM]
196048
195973
-
Thr
TGT
[ENA]
¡û
>W1810675772
QKLN01000003
Gammaproteobacteria
Pseudomonas sp. TKO26 [QKLN]
196048
195973
-
Thr
TGT
[ENA]
¡û
>W1810675834
QKLO01000003
Gammaproteobacteria
Pseudomonas sp. TKO14 [QKLO]
196048
195973
-
Thr
TGT
[ENA]
¡û
>C151048318
CP009290
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca JD37 [CP009290]
6267595
6267670
+
Thr
TGT
[Ensembl]
¡û
>C151073910
CP010892
Gammaproteobacteria
Pseudomonas sp. MRSN 12121 MRSN12121 [CP010892]
373737
373662
-
Thr
TGT
[Ensembl]
¡û
>C151075482
CP011020
Gammaproteobacteria
Pseudomonas chlororaphis UFB2 [CP011020]
1508245
1508320
+
Thr
TGT
[Ensembl]
¡û
>C151077073
CP011110
Gammaproteobacteria
Pseudomonas chlororaphis PCL1606 [CP011110]
6257508
6257583
+
Thr
TGT
[Ensembl]
¡û
>W1511400028
JTGG01000001
Gammaproteobacteria
Pseudomonas fluorescens SF39a [JTGG]
191880
191805
-
Thr
TGT
[ENA]
¡û
>W1511507651
JXNZ01000010
Gammaproteobacteria
Pseudomonas fluorescens UM270 [JXNZ]
10766
10691
-
Thr
TGT
[ENA]
¡û
>W1710506318
FMUL01000014
Gammaproteobacteria
Pseudomonas sp. NFACC32-1 [FMUL]
12030
12105
+
Thr
TGT
[ENA]
¡û
>W1710536728
FNTJ01000002
Gammaproteobacteria
Pseudomonas saponiphila [FNTJ]
675832
675757
-
Thr
TGT
[ENA]
¡û
>W1710581368
FPKB01000007
Gammaproteobacteria
Pseudomonas sp. NFACC36 [FPKB]
151305
151230
-
Thr
TGT
[ENA]
¡û
>W1710581421
FPKC01000012
Gammaproteobacteria
Pseudomonas sp. NFACC47-1 [FPKC]
155711
155786
+
Thr
TGT
[ENA]
¡û
>W1710581866
FPKK01000006
Gammaproteobacteria
Pseudomonas sp. NFACC43 [FPKK]
155725
155800
+
Thr
TGT
[ENA]
¡û
>W1710581922
FPKL01000013
Gammaproteobacteria
Pseudomonas sp. NFACC49-2 [FPKL]
155936
156011
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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