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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460691 (112 seq.)
>W1710878475
LMQZ01000001
Gammaproteobacteria
Pseudomonas sp. Leaf434 [LMQZ]
1293481
1293406
-
Asn
GTT
[ENA]
¡û
>W1711055235
LRUN01000003
Gammaproteobacteria
Pseudomonas bananamidigenes fluorescens [LRUN]
8648
8723
+
Asn
GTT
[ENA]
¡û
>W1711318673
MAYQ01000001
Gammaproteobacteria
Pseudomonas moraviensis [MAYQ]
243359
243284
-
Asn
GTT
[ENA]
¡û
>W1711499468
MKQJ01000009
Gammaproteobacteria
Pseudomonas koreensis [MKQJ]
71281
71206
-
Asn
GTT
[ENA]
¡û
>W1711662407
MQUK01000007
Gammaproteobacteria
Pseudomonas moraviensis [MQUK]
178702
178627
-
Asn
GTT
[ENA]
¡û
>W1712004914
NEHE01000008
Gammaproteobacteria
Pseudomonas sp. R5(2017) [NEHE]
286463
286538
+
Asn
GTT
[ENA]
¡û
>W1712004962
NEHF01000002
Gammaproteobacteria
Pseudomonas sp. R4(2017) [NEHF]
169379
169304
-
Asn
GTT
[ENA]
¡û
>W1712005045
NEHG01000009
Gammaproteobacteria
Pseudomonas sp. R47(2017) [NEHG]
170084
170009
-
Asn
GTT
[ENA]
¡û
>W1712005113
NEHH01000010
Gammaproteobacteria
Pseudomonas sp. R45(2017) [NEHH]
127820
127895
+
Asn
GTT
[ENA]
¡û
>W1712005177
NEHI01000019
Gammaproteobacteria
Pseudomonas sp. R44(2017) [NEHI]
8981
9056
+
Asn
GTT
[ENA]
¡û
>W1712005237
NEHJ01000010
Gammaproteobacteria
Pseudomonas sp. R43(2017) [NEHJ]
170084
170009
-
Asn
GTT
[ENA]
¡û
>W1712005291
NEHK01000006
Gammaproteobacteria
Pseudomonas sp. R41(2017) [NEHK]
329446
329371
-
Asn
GTT
[ENA]
¡û
>W1712005356
NEHL01000007
Gammaproteobacteria
Pseudomonas sp. R40(2017) [NEHL]
329083
329008
-
Asn
GTT
[ENA]
¡û
>W1712005402
NEHM01000007
Gammaproteobacteria
Pseudomonas sp. R39(2017) [NEHM]
107184
107259
+
Asn
GTT
[ENA]
¡û
>W1712005471
NEHN01000006
Gammaproteobacteria
Pseudomonas sp. R38(2017) [NEHN]
492254
492179
-
Asn
GTT
[ENA]
¡û
>W1712005590
NEHP01000006
Gammaproteobacteria
Pseudomonas sp. R36(2017) [NEHP]
329446
329371
-
Asn
GTT
[ENA]
¡û
>W1712005648
NEHQ01000011
Gammaproteobacteria
Pseudomonas sp. R35(2017) [NEHQ]
120982
121057
+
Asn
GTT
[ENA]
¡û
>W1712005733
NEHR01000012
Gammaproteobacteria
Pseudomonas sp. R34(2017) [NEHR]
170084
170009
-
Asn
GTT
[ENA]
¡û
>W1712005782
NEHS01000006
Gammaproteobacteria
Pseudomonas sp. R33(2017) [NEHS]
325718
325643
-
Asn
GTT
[ENA]
¡û
>W1712005858
NEHT01000014
Gammaproteobacteria
Pseudomonas sp. R32(2017) [NEHT]
118569
118494
-
Asn
GTT
[ENA]
¡û
>W1712005906
NEHU01000006
Gammaproteobacteria
Pseudomonas sp. R31(2017) [NEHU]
329083
329008
-
Asn
GTT
[ENA]
¡û
>W1712005967
NEHV01000015
Gammaproteobacteria
Pseudomonas sp. R29(2017) [NEHV]
8826
8901
+
Asn
GTT
[ENA]
¡û
>W1712006069
NEHX01000002
Gammaproteobacteria
Pseudomonas sp. R27(2017) [NEHX]
168383
168308
-
Asn
GTT
[ENA]
¡û
>W1712006209
NEHZ01000016
Gammaproteobacteria
Pseudomonas sp. R25(2017) [NEHZ]
9114
9189
+
Asn
GTT
[ENA]
¡û
>W1712006243
NEIA01000007
Gammaproteobacteria
Pseudomonas sp. R24(2017) [NEIA]
198471
198546
+
Asn
GTT
[ENA]
¡û
>W1712006318
NEIB01000009
Gammaproteobacteria
Pseudomonas sp. R23(2017) [NEIB]
112634
112709
+
Asn
GTT
[ENA]
¡û
>W1712006388
NEIC01000010
Gammaproteobacteria
Pseudomonas sp. R22(2017) [NEIC]
170084
170009
-
Asn
GTT
[ENA]
¡û
>W1712006454
NEID01000015
Gammaproteobacteria
Pseudomonas sp. R21(2017) [NEID]
8826
8901
+
Asn
GTT
[ENA]
¡û
>W1712006506
NEIE01000014
Gammaproteobacteria
Pseudomonas sp. R20(2017) [NEIE]
8981
9056
+
Asn
GTT
[ENA]
¡û
>W1712006540
NEIF01000002
Gammaproteobacteria
Pseudomonas sp. R19(2017) [NEIF]
133221
133146
-
Asn
GTT
[ENA]
¡û
>W1712006657
NEIH01000003
Gammaproteobacteria
Pseudomonas sp. R16(2017) [NEIH]
286769
286844
+
Asn
GTT
[ENA]
¡û
>W1712006721
NEII01000007
Gammaproteobacteria
Pseudomonas sp. R15(2017) [NEII]
198132
198207
+
Asn
GTT
[ENA]
¡û
>W1712006847
NEIK01000002
Gammaproteobacteria
Pseudomonas sp. R12(2017) [NEIK]
168383
168308
-
Asn
GTT
[ENA]
¡û
>W1712007204
NEIP01000024
Gammaproteobacteria
Pseudomonas sp. B7(2017) [NEIP]
22613
22538
-
Asn
GTT
[ENA]
¡û
>W1712007424
NEIT01000003
Gammaproteobacteria
Pseudomonas sp. B40(2017) [NEIT]
637957
637882
-
Asn
GTT
[ENA]
¡û
>W1712007479
NEIU01000004
Gammaproteobacteria
Pseudomonas sp. B3(2017) [NEIU]
381887
381962
+
Asn
GTT
[ENA]
¡û
>W1712007533
NEIV01000005
Gammaproteobacteria
Pseudomonas sp. B39(2017) [NEIV]
270108
270183
+
Asn
GTT
[ENA]
¡û
>W1712007644
NEIW01000010
Gammaproteobacteria
Pseudomonas sp. B38(2017) [NEIW]
132473
132398
-
Asn
GTT
[ENA]
¡û
>W1712007674
NEIX01000006
Gammaproteobacteria
Pseudomonas sp. B37(2017) [NEIX]
328137
328212
+
Asn
GTT
[ENA]
¡û
>W1712007725
NEIY01000007
Gammaproteobacteria
Pseudomonas sp. B36(2017) [NEIY]
270093
270168
+
Asn
GTT
[ENA]
¡û
>W1712007786
NEIZ01000004
Gammaproteobacteria
Pseudomonas sp. B35(2017) [NEIZ]
356293
356368
+
Asn
GTT
[ENA]
¡û
>W1712007854
NEJA01000006
Gammaproteobacteria
Pseudomonas sp. B34(2017) [NEJA]
409511
409586
+
Asn
GTT
[ENA]
¡û
>W1712007931
NEJB01000009
Gammaproteobacteria
Pseudomonas sp. B33(2017) [NEJB]
80235
80160
-
Asn
GTT
[ENA]
¡û
>W1712007978
NEJC01000006
Gammaproteobacteria
Pseudomonas sp. B32(2017) [NEJC]
409511
409586
+
Asn
GTT
[ENA]
¡û
>W1712008042
NEJD01000008
Gammaproteobacteria
Pseudomonas sp. B31(2017) [NEJD]
270091
270166
+
Asn
GTT
[ENA]
¡û
>W1712008101
NEJE01000006
Gammaproteobacteria
Pseudomonas sp. B30(2017) [NEJE]
132473
132398
-
Asn
GTT
[ENA]
¡û
>W1712008187
NEJF01000025
Gammaproteobacteria
Pseudomonas sp. B2(2017) [NEJF]
22613
22538
-
Asn
GTT
[ENA]
¡û
>W1712008236
NEJG01000013
Gammaproteobacteria
Pseudomonas sp. B29(2017) [NEJG]
107528
107603
+
Asn
GTT
[ENA]
¡û
>W1712008365
NEJI01000011
Gammaproteobacteria
Pseudomonas sp. B27(2017) [NEJI]
124607
124532
-
Asn
GTT
[ENA]
¡û
>W1712008412
NEJJ01000015
Gammaproteobacteria
Pseudomonas sp. B26(2017) [NEJJ]
12868
12943
+
Asn
GTT
[ENA]
¡û
>W1712008478
NEJK01000010
Gammaproteobacteria
Pseudomonas sp. B25(2017) [NEJK]
104340
104415
+
Asn
GTT
[ENA]
¡û
>W1712008734
NEJO01000013
Gammaproteobacteria
Pseudomonas sp. B21(2017) [NEJO]
107550
107625
+
Asn
GTT
[ENA]
¡û
>W1712008813
NEJP01000024
Gammaproteobacteria
Pseudomonas sp. B20(2017) [NEJP]
12790
12865
+
Asn
GTT
[ENA]
¡û
>W1712008863
NEJQ01000009
Gammaproteobacteria
Pseudomonas sp. B1(2017) [NEJQ]
80170
80095
-
Asn
GTT
[ENA]
¡û
>W1712009071
NEJT01000025
Gammaproteobacteria
Pseudomonas sp. B17(2017) [NEJT]
77408
77333
-
Asn
GTT
[ENA]
¡û
>W1712009190
NEJV01000024
Gammaproteobacteria
Pseudomonas sp. B11(2017) [NEJV]
72001
72076
+
Asn
GTT
[ENA]
¡û
>W1712009431
NEJZ01000013
Gammaproteobacteria
Pseudomonas sp. B15(2017) [NEJZ]
43737
43812
+
Asn
GTT
[ENA]
¡û
>W1712009499
NEKA01000013
Gammaproteobacteria
Pseudomonas sp. B16(2017) [NEKA]
107557
107632
+
Asn
GTT
[ENA]
¡û
>C016270
CP000094
Gammaproteobacteria
Pseudomonas fluorescens Pf0-1 [CP000094]
2135315
2135240
-
Asn
GTT
[Ensembl]
¡û
>WENV181371132
OFQU01033763
[OFQU] wastewater metagenome; Exp Tend CN 90WW
41
116
+
Asn
GTT
[ENA]
¢þ
>W141188848
AYMZ01000003
Gammaproteobacteria
Pseudomonas moraviensis R28-S [AYMZ]
1399966
1399891
-
Asn
GTT
[ENA]
¡û
>WENV170022922
BCQK01077542
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
354
429
+
Asn
GTT
[ENA]
¢þ
>C181168684
CP028826
Gammaproteobacteria
Pseudomonas fluorescens MS82 [CP028826]
2193952
2193877
-
Asn
GTT
-
¡û
>C181181707
CP029608
Gammaproteobacteria
Pseudomonas kribbensis 46-2 [CP029608]
2219185
2219110
-
Asn
GTT
-
¡û
>C191027457
CP024646
Gammaproteobacteria
Pseudomonas syringae [CP024646]
2202472
2202397
-
Asn
GTT
-
¡û
>C191206277
LR134318
Gammaproteobacteria
Pseudomonas fluorescens NCTC9428 [LR134318]
2078165
2078090
-
Asn
GTT
-
¡û
>W09100244
AAAT03000002
Gammaproteobacteria
Pseudomonas fluorescens PfO-1 [AAAT]
315570
315645
+
Asn
GTT
[ENA]
¡û
>W141816120
JQJQ01000013
Gammaproteobacteria
Pseudomonas sp. PTA1 [JQJQ]
32663
32588
-
Asn
GTT
[ENA]
¡û
>W1910001729
ARVC01000020
Gammaproteobacteria
Pseudomonas sp. LAIL14HWK12:I2 [ARVC]
139270
139195
-
Asn
GTT
[ENA]
¡û
>W1910504627
FYDP01000001
Gammaproteobacteria
Pseudomonas sp. Irchel 3F6 [FYDP]
93337
93262
-
Asn
GTT
[ENA]
¡û
>W1910768207
MOBV01000006
Gammaproteobacteria
Pseudomonas fluorescens 90F12-2 [MOBV]
176337
176262
-
Asn
GTT
[ENA]
¡û
>W1910768466
MOCA01000004
Gammaproteobacteria
Pseudomonas moraviensis 36B3 [MOCA]
753334
753409
+
Asn
GTT
[ENA]
¡û
>W1910768518
MOCB01000001
Gammaproteobacteria
Pseudomonas fluorescens 89F1 [MOCB]
131637
131712
+
Asn
GTT
[ENA]
¡û
>W1910768631
MOCC01000011
Gammaproteobacteria
Pseudomonas fluorescens 90D7A [MOCC]
176620
176545
-
Asn
GTT
[ENA]
¡û
>W1911434048
NXNJ01000011
Gammaproteobacteria
Pseudomonas fluorescens CH267 [NXNJ]
54043
53968
-
Asn
GTT
[ENA]
¡û
>W1911671295
QFZZ01000009
Gammaproteobacteria
Pseudomonas sp. CFBP13508 [QFZZ]
92371
92446
+
Asn
GTT
[ENA]
¡û
>W1911748853
QWFC01000022
Gammaproteobacteria
Pseudomonas sp. 91RF [QWFC]
93795
93870
+
Asn
GTT
[ENA]
¡û
>W1810120590
PHSU01000027
Gammaproteobacteria
Pseudomonas sp. QS1027 [PHSU]
278622
278547
-
Asn
GTT
[ENA]
¡û
>W1810156146
PJBC01000062
Gammaproteobacteria
Pseudomonas sp. Choline-02u-1 [PJBC]
118581
118656
+
Asn
GTT
[ENA]
¡û
>W1810207745
POFN01000026
Gammaproteobacteria
Pseudomonas sp. FW215-L1 [POFN]
86431
86356
-
Asn
GTT
[ENA]
¡û
>W1810207800
POFO01000015
Gammaproteobacteria
Pseudomonas sp. FW215-R2 [POFO]
126566
126641
+
Asn
GTT
[ENA]
¡û
>W1810207842
POFP01000006
Gammaproteobacteria
Pseudomonas sp. FW215-R4 [POFP]
126420
126495
+
Asn
GTT
[ENA]
¡û
>W1810207905
POFQ01000008
Gammaproteobacteria
Pseudomonas sp. FW215-E1 [POFQ]
86092
86017
-
Asn
GTT
[ENA]
¡û
>W1810211066
POHU01000013
Gammaproteobacteria
Pseudomonas sp. FW305-BF6 [POHU]
30911
30986
+
Asn
GTT
[ENA]
¡û
>W1810211148
POHV01000017
Gammaproteobacteria
Pseudomonas sp. GW456-12-10-14-LB2 [POHV]
8782
8857
+
Asn
GTT
[ENA]
¡û
>W1810211205
POHW01000010
Gammaproteobacteria
Pseudomonas sp. FW305-BF15 [POHW]
159801
159726
-
Asn
GTT
[ENA]
¡û
>W1810238967
PPSA01000020
Gammaproteobacteria
Pseudomonas sp. GW456-12-1-14-TSB6 FW104-15G4B [PPSA]
19142
19067
-
Asn
GTT
[ENA]
¡û
>W1810243426
PPYB02000001
Gammaproteobacteria
Pseudomonas sp. MWU13-2860 [PPYB]
431095
431170
+
Asn
GTT
[ENA]
¡û
>W1810580676
QETJ01000019
Gammaproteobacteria
Pseudomonas sp. NDM [QETJ]
34352
34427
+
Asn
GTT
[ENA]
¡û
>W1810670279
QJRR01000001
Gammaproteobacteria
Pseudomonas koreensis LB-090714 [QJRR]
33118
33043
-
Asn
GTT
[ENA]
¡û
>W1810670361
QJRS01000014
Gammaproteobacteria
Pseudomonas koreensis 57B-090624 [QJRS]
31660
31585
-
Asn
GTT
[ENA]
¡û
>W1810692205
QLIO01000007
Gammaproteobacteria
Pseudomonas fluorescens HPB [QLIO]
190912
190837
-
Asn
GTT
[ENA]
¡û
>W1810784683
QRAV01000013
Gammaproteobacteria
Pseudomonas jessenii E2333 [QRAV]
47075
47150
+
Asn
GTT
[ENA]
¡û
>W1510073695
CDMF01000001
Gammaproteobacteria
Pseudomonas fluorescens [CDMF]
2177288
2177213
-
Asn
GTT
[ENA]
¡û
>W1511400061
JTGG01000014
Gammaproteobacteria
Pseudomonas fluorescens SF39a [JTGG]
21737
21662
-
Asn
GTT
[ENA]
¡û
>W1511400101
JTGH01000013
Gammaproteobacteria
Pseudomonas fluorescens SF4c [JTGH]
377171
377096
-
Asn
GTT
[ENA]
¡û
>W1511502994
JXDG01000003
Gammaproteobacteria
Pseudomonas batumici UCM B-321 [JXDG]
18334
18259
-
Asn
GTT
[ENA]
¡û
>W1511509333
JXQY01000024
Gammaproteobacteria
Pseudomonas fluorescens MEP34 [JXQY]
20016
19941
-
Asn
GTT
[ENA]
¡û
>W1511625700
LCZE01000018
Gammaproteobacteria
Pseudomonas fluorescens AU11114 [LCZE]
186515
186440
-
Asn
GTT
[ENA]
¡û
>C161036835
CP011566
Gammaproteobacteria
Pseudomonas sp. DR 5-09 [CP011566]
2130392
2130317
-
Asn
GTT
[Ensembl]
¡û
>C161068239
CP014205
Gammaproteobacteria
Pseudomonas glycinae MS586 [CP014205]
541973
541898
-
Asn
GTT
-
¡û
>C161079356
CP014947
Gammaproteobacteria
Pseudomonas koreensis D26 [CP014947]
2800637
2800562
-
Asn
GTT
[Ensembl]
¡û
>W121044432
AHZM01000524
Gammaproteobacteria
Pseudomonas sp. R62 [AHZM]
778
703
-
Asn
GTT
[ENA]
¡û
>W121086056
AKJQ01000045
Gammaproteobacteria
Pseudomonas sp. GM25 [AKJQ]
84118
84043
-
Asn
GTT
[ENA]
¡û
>W1610620667
LHPA01000023
Gammaproteobacteria
Pseudomonas sp. RIT-PI-o [LHPA]
106730
106655
-
Asn
GTT
[ENA]
¡û
>W1610740821
LMQZ01000001
Gammaproteobacteria
Pseudomonas sp. Leaf434 [LMQZ]
1293481
1293406
-
Asn
GTT
[ENA]
¡û
>W1610896281
LRUN01000003
Gammaproteobacteria
Pseudomonas bananamidigenes fluorescens [LRUN]
8648
8723
+
Asn
GTT
[ENA]
¡û
>W1611062016
MAYQ01000001
Gammaproteobacteria
Pseudomonas moraviensis [MAYQ]
243359
243284
-
Asn
GTT
[ENA]
¡û
>W1710508177
FMVX01000003
Gammaproteobacteria
Pseudomonas sp. NFIX46 [FMVX]
409077
409152
+
Asn
GTT
[ENA]
¡û
>W1710510313
FMXW01000001
Gammaproteobacteria
Pseudomonas putida [FMXW]
423279
423204
-
Asn
GTT
[ENA]
¡û
>W1710574308
FOYE01000003
Gammaproteobacteria
Pseudomonas sp. NFIX49 [FOYE]
409317
409392
+
Asn
GTT
[ENA]
¡û
>W1710748361
LHPA01000023
Gammaproteobacteria
Pseudomonas sp. RIT-PI-o [LHPA]
106730
106655
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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