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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460704 (58 seq.)
>W1711174362
LWED01000074
Gammaproteobacteria
Shewanella baltica [LWED]
20921
20996
+
Ala
GGC
[ENA]
¡û
>W1711174365
LWED01000074
Gammaproteobacteria
Shewanella baltica [LWED]
21518
21593
+
Ala
GGC
[ENA]
¡û
>W1711621617
MPDG02000002
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
1237143
1237218
+
Ala
GGC
[ENA]
¡û
>W1711621646
MPDG02000020
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
287
212
-
Ala
GGC
[ENA]
¡û
>W131225221
AUDJ01000055
Gammaproteobacteria
Ferrimonas kyonanensis DSM 18153 [AUDJ]
1899
1974
+
Ala
GGC
[ENA]
¡û
>W131229014
AUGL01000022
Gammaproteobacteria
Ferrimonas futtsuensis DSM 18154 [AUGL]
76854
76779
-
Ala
GGC
[ENA]
¡û
>W131229038
AUGL01000040
Gammaproteobacteria
Ferrimonas futtsuensis DSM 18154 [AUGL]
219
144
-
Ala
GGC
[ENA]
¡û
>C020687
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
3294479
3294404
-
Ala
GGC
[Ensembl]
¡û
>C020690
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
3293881
3293806
-
Ala
GGC
[Ensembl]
¡û
>w026325
ABAU01000072
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
17959
17882
-
Ala
GGC
[ENA]
¡û
>w026322
ABAU01000072
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
18544
18467
-
Ala
GGC
[ENA]
¡û
>w024907
AAZC01000049
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
14
91
+
Ala
GGC
[ENA]
¡û
>w018630
AATK01000025
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
152
229
+
Ala
GGC
[ENA]
¡û
>C08008672
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3382261
3382189
-
Ala
GGC
[Ensembl]
¡û
>C08008675
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3381582
3381510
-
Ala
GGC
[Ensembl]
¡û
>C08008776
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
3496910
3496838
-
Ala
GGC
[Ensembl]
¡û
>C08008779
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
3496312
3496240
-
Ala
GGC
[Ensembl]
¡û
>WENV170684302
LFRM01031730
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
5268
5343
+
Ala
GGC
[ENA]
¢þ
>C181016867
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
3768589
3768514
-
Ala
GGC
-
¡û
>C181075023
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3662715
3662790
+
Ala
GGC
-
¡û
>C181164497
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
3586360
3586435
+
Ala
GGC
-
¡û
>C181164500
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
3586958
3587033
+
Ala
GGC
-
¡û
>C181167941
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
3127905
3127830
-
Ala
GGC
-
¡û
>C191187100
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
3030926
3030851
-
Ala
GGC
-
¡û
>C191187104
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
3030402
3030327
-
Ala
GGC
-
¡û
>C191187110
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
3029598
3029523
-
Ala
GGC
-
¡û
>C191206423
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
1757319
1757394
+
Ala
GGC
-
¡û
>C191206426
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
1757917
1757992
+
Ala
GGC
-
¡û
>W09102889
AAIO01000045
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
33233
33158
-
Ala
GGC
[ENA]
¡û
>W09102892
AAIO01000045
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
32635
32560
-
Ala
GGC
[ENA]
¡û
>C09109158
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1819460
1819535
+
Ala
GGC
[Ensembl]
¡û
>C09109161
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1820045
1820120
+
Ala
GGC
[Ensembl]
¡û
>W1810422953
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
829880
829955
+
Ala
GGC
[ENA]
¡û
>W1810721592
QNSC01000014
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
103745
103820
+
Ala
GGC
[ENA]
¡û
>W10119094
ADVH01000073
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
329
254
-
Ala
GGC
[ENA]
¡û
>W10126091
AECY01000027
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
423
348
-
Ala
GGC
[ENA]
¡û
>W10126095
AECY01000031
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
894
819
-
Ala
GGC
[ENA]
¡û
>W10126438
AEDE01000022
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
2673
2748
+
Ala
GGC
[ENA]
¡û
>W10126441
AEDE01000022
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
3270
3345
+
Ala
GGC
[ENA]
¡û
>C11119391
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1833321
1833396
+
Ala
GGC
[Ensembl]
¡û
>C11119394
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1833919
1833994
+
Ala
GGC
[Ensembl]
¡û
>C11119533
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3393514
3393439
-
Ala
GGC
[Ensembl]
¡û
>C11119536
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3392916
3392841
-
Ala
GGC
[Ensembl]
¡û
>C11119631
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
3443959
3443884
-
Ala
GGC
[Ensembl]
¡û
>C11119634
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
3443361
3443286
-
Ala
GGC
[Ensembl]
¡û
>W11125266
ADVH01000073
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
329
254
-
Ala
GGC
[ENA]
¡û
>W11133352
AECY01000027
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
423
348
-
Ala
GGC
[ENA]
¡û
>W11133356
AECY01000031
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
894
819
-
Ala
GGC
[ENA]
¡û
>W11133699
AEDE01000022
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
2673
2748
+
Ala
GGC
[ENA]
¡û
>W11133702
AEDE01000022
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
3270
3345
+
Ala
GGC
[ENA]
¡û
>W11178446
AGEX01000004
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
183447
183372
-
Ala
GGC
[ENA]
¡û
>W11178510
AGEX01000039
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
748
673
-
Ala
GGC
[ENA]
¡û
>W1610607217
LFTS01000022
Gammaproteobacteria
Gammaproteobacteria bacterium DTU040 [LFTS]
5268
5343
+
Ala
GGC
[ENA]
¡û
>W1610982675
LWED01000074
Gammaproteobacteria
Shewanella baltica [LWED]
20921
20996
+
Ala
GGC
[ENA]
¡û
>W1610982678
LWED01000074
Gammaproteobacteria
Shewanella baltica [LWED]
21518
21593
+
Ala
GGC
[ENA]
¡û
>W1710519124
FNEM01000041
Gammaproteobacteria
Ferrimonas sediminum [FNEM]
222
147
-
Ala
GGC
[ENA]
¡û
>W1710597924
FTNN01000002
Gammaproteobacteria
Shewanella morhuae [FTNN]
206
131
-
Ala
GGC
[ENA]
¡û
>W1710728504
LFTS01000022
Gammaproteobacteria
Gammaproteobacteria bacterium DTU040 [LFTS]
5268
5343
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK