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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460724 (62 seq.)
>C000800
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
1842819
1842894
+
Val
TAC
[Ensembl]
¡û
>C000814
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4453316
4453241
-
Val
TAC
[Ensembl]
¡û
>C000827
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4446723
4446648
-
Val
TAC
[Ensembl]
¡û
>C000847
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4438012
4437937
-
Val
TAC
[Ensembl]
¡û
>C000871
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4430271
4430196
-
Val
TAC
[Ensembl]
¡û
>w017012
AAQV01000016
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
45413
45336
-
Val
TAC
[ENA]
¡û
>w010471
AAKU01000254
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
1133
1061
-
Val
TAC
[ENA]
¡û
>w010441
AAKU01000209
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
980
1055
+
Val
TAC
[ENA]
¡û
>w010421
AAKU01000148
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
4771
4846
+
Val
TAC
[ENA]
¡û
>w010398
AAKU01000026
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
1325
1400
+
Val
TAC
[ENA]
¡û
>w010382
AAKU01000002
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
1370
1445
+
Val
TAC
[ENA]
¡û
>WENV180042429
LQAE01018619
[LQAE] bioreactor metagenome; bioreactor_1 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
112
39
-
Val
TAC
[ENA]
¢þ
>WENV180042658
LQAG01000005
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
181945
181872
-
Val
TAC
[ENA]
¢þ
>WENV180042749
LQAG01000367
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
560
633
+
Val
TAC
[ENA]
¢þ
>WENV180042780
LQAG01000697
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
286
359
+
Val
TAC
[ENA]
¢þ
>WENV180043322
LQAH01028726
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
215
142
-
Val
TAC
[ENA]
¢þ
>WENV180043340
LQAH01032044
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
143
215
+
Val
TAC
[ENA]
¢þ
>WENV180043363
LQAH01037266
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
7
79
+
Val
TAC
[ENA]
¢þ
>C08000776
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2125455
2125383
-
Val
TAC
[Ensembl]
¡û
>WENV183704898
PDWI01000747
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
52617
52543
-
Val
TAC
[ENA]
¢þ
>WENV183706651
PDWI01005015
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
10982
10908
-
Val
TAC
[ENA]
¢þ
>WENV183707902
PDWI01011340
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
9312
9240
-
Val
TAC
[ENA]
¢þ
>WENV183707991
PDWI01012092
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
24
98
+
Val
TAC
[ENA]
¢þ
>WENV183710706
PDWI01052119
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
545
617
+
Val
TAC
[ENA]
¢þ
>WENV183713065
PDWI01123025
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
17
91
+
Val
TAC
[ENA]
¢þ
>WENV183714504
PDWI01187742
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
235
309
+
Val
TAC
[ENA]
¢þ
>WENV183714856
PDWI01206692
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
969
1043
+
Val
TAC
[ENA]
¢þ
>WENV183714983
PDWI01214502
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
328
254
-
Val
TAC
[ENA]
¢þ
>WENV183715814
PDWI01264396
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
103
177
+
Val
TAC
[ENA]
¢þ
>WENV183719804
PDWJ01020617
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
940
1014
+
Val
TAC
[ENA]
¢þ
>WENV183722081
PDWJ01104638
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
15
89
+
Val
TAC
[ENA]
¢þ
>WENV183747285
PPCM01000702
[PPCM] marine sediment metagenome; marine sediment
73
1
-
Val
TAC
[ENA]
¢þ
>WENV183747370
PPCM01001177
[PPCM] marine sediment metagenome; marine sediment
4507
4579
+
Val
TAC
[ENA]
¢þ
>WENV170012689
ASRN01001557
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2292
2220
-
Val
TAC
[ENA]
¢þ
>WENV170013070
ASRR01008763
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
210
137
-
Val
TAC
[ENA]
¢þ
>WENV170635134
JDSF01000085
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
760
835
+
Val
TAC
[ENA]
¢þ
>WENV170635137
JDSF01000086
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
200
273
+
Val
TAC
[ENA]
¢þ
>WENV170635169
JDSF01000159
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
45089
45162
+
Val
TAC
[ENA]
¢þ
>WENV170635200
JDSF01000250
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
456
528
+
Val
TAC
[ENA]
¢þ
>WENV170646525
JQGR01020301
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
93
21
-
Val
TAC
[ENA]
¢þ
>WENV170674822
LCWY01007256
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
229
304
+
Val
TAC
[ENA]
¢þ
>WENV170675310
LCWZ01038713
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
192
267
+
Val
TAC
[ENA]
¢þ
>WENV170675499
LCWZ01096023
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
96
171
+
Val
TAC
[ENA]
¢þ
>WENV170969352
MTKW01026456
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
419
344
-
Val
TAC
[ENA]
¢þ
>C191193276
LR130778
Bacillota
Petrocella atlantisensis [LR130778]
2905722
2905795
+
Val
TAC
-
¡û
>C191193290
LR130778
Bacillota
Petrocella atlantisensis [LR130778]
1848869
1848797
-
Val
TAC
-
¡û
>C191193314
LR130778
Bacillota
Petrocella atlantisensis [LR130778]
997322
997249
-
Val
TAC
-
¡û
>W1810250649
PQDH01000001
Bacillota
Vallitalea okinawensis S15 [PQDH]
674526
674453
-
Val
TAC
[ENA]
¡û
>W1810250652
PQDH01000001
Bacillota
Vallitalea okinawensis S15 [PQDH]
669452
669378
-
Val
TAC
[ENA]
¡û
>W1810250669
PQDH01000011
Bacillota
Vallitalea okinawensis S15 [PQDH]
245
320
+
Val
TAC
[ENA]
¡û
>W1810250697
PQDH01000022
Bacillota
Vallitalea okinawensis S15 [PQDH]
20
92
+
Val
TAC
[ENA]
¡û
>W1810250702
PQDH01000025
Bacillota
Vallitalea okinawensis S15 [PQDH]
44042
43970
-
Val
TAC
[ENA]
¡û
>W1810250713
PQDH01000029
Bacillota
Vallitalea okinawensis S15 [PQDH]
22820
22746
-
Val
TAC
[ENA]
¡û
>W1810700905
QMDO01000001
Bacillota
Vallitalea guaymasensis L81 [QMDO]
2530646
2530719
+
Val
TAC
[ENA]
¡û
>W1810700935
QMDO01000001
Bacillota
Vallitalea guaymasensis L81 [QMDO]
3510561
3510633
+
Val
TAC
[ENA]
¡û
>W1810700956
QMDO01000001
Bacillota
Vallitalea guaymasensis L81 [QMDO]
35464
35392
-
Val
TAC
[ENA]
¡û
>W1610547788
JWID01000007
Bacillota
Defluviitalea phaphyphila [JWID]
258
332
+
Val
TAC
[ENA]
¡û
>W1710531815
FNPV01000002
Bacillota
Tindallia californiensis [FNPV]
428604
428529
-
Val
TAC
[ENA]
¡û
>W1710531830
FNPV01000005
Bacillota
Tindallia californiensis [FNPV]
2
77
+
Val
TAC
[ENA]
¡û
>W1710563808
FOQA01000001
Bacillota
Tindallia magadiensis [FOQA]
2
77
+
Val
TAC
[ENA]
¡û
>W1710563838
FOQA01000006
Bacillota
Tindallia magadiensis [FOQA]
242484
242409
-
Val
TAC
[ENA]
¡û
>W1710651164
JWID01000007
Bacillota
Defluviitalea phaphyphila [JWID]
258
332
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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