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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460732 (94 seq.)
>W131201958
ASWK01000001
Bacillota
Enterococcus dispar ATCC 51266 [ASWK]
2063867
2063940
+
Glu
TTC
[ENA]
¡û
>W131238261
BAHQ02000216
Bacillota
Clostridiales bacterium VE202-03 [BAHQ]
1514
1588
+
Glu
TTC
[ENA]
¡û
>WENV180121714
OASS01000224
[OASS] human gut metagenome; faeces
25370
25296
-
Glu
TTC
[ENA]
¢þ
>WENV180137318
OATO01006033
[OATO] human gut metagenome; faeces
209
135
-
Glu
TTC
[ENA]
¢þ
>WENV180166328
OAVM01000376
[OAVM] human gut metagenome; faeces
14530
14456
-
Glu
TTC
[ENA]
¢þ
>WENV180180010
OAWJ01024638
[OAWJ] human gut metagenome; faeces
164
90
-
Glu
TTC
[ENA]
¢þ
>WENV180187065
OAWV01007326
[OAWV] human gut metagenome; faeces
404
330
-
Glu
TTC
[ENA]
¢þ
>WENV180188134
OAWW01005856
[OAWW] human gut metagenome; faeces
2433
2359
-
Glu
TTC
[ENA]
¢þ
>WENV180190439
OAWZ01006149
[OAWZ] human gut metagenome; faeces
429
355
-
Glu
TTC
[ENA]
¢þ
>WENV180191066
OAXB01000297
[OAXB] human gut metagenome; faeces
14158
14084
-
Glu
TTC
[ENA]
¢þ
>WENV180197719
OBAB01008451
[OBAB] human gut metagenome; faeces
1514
1588
+
Glu
TTC
[ENA]
¢þ
>WENV180314373
OBKG01001706
[OBKG] human gut metagenome; human gut
3757
3683
-
Glu
TTC
[ENA]
¢þ
>WENV180424777
OBVX01018671
[OBVX] human gut metagenome; faeces
476
550
+
Glu
TTC
[ENA]
¢þ
>WENV180431071
OBWG01002482
[OBWG] human gut metagenome; faeces
1539
1613
+
Glu
TTC
[ENA]
¢þ
>WENV180439548
OBWT01000429
[OBWT] human gut metagenome; faeces
13109
13035
-
Glu
TTC
[ENA]
¢þ
>WENV180454137
OBXM01006581
[OBXM] human gut metagenome; faeces
2104
2178
+
Glu
TTC
[ENA]
¢þ
>WENV180470069
OBYM01051172
[OBYM] human gut metagenome; faeces
127
201
+
Glu
TTC
[ENA]
¢þ
>WENV180506763
OCAS01006447
[OCAS] human gut metagenome; faeces
398
324
-
Glu
TTC
[ENA]
¢þ
>WENV180633876
OCRA01086462
[OCRA] human gut metagenome; human gut
205
279
+
Glu
TTC
[ENA]
¢þ
>WENV180839605
ODKI01026086
[ODKI] human metagenome; G_DNA_Stool
24
98
+
Glu
TTC
[ENA]
¢þ
>WENV180848667
ODKU01011005
[ODKU] human metagenome; G_DNA_Stool
554
628
+
Glu
TTC
[ENA]
¢þ
>WENV181287247
OFGX01001890
[OFGX] mouse gut metagenome; faeces
68
142
+
Glu
TTC
[ENA]
¢þ
>WENV181461478
OGEM01029094
[OGEM] metagenome; Human gut stool
34
108
+
Glu
TTC
[ENA]
¢þ
>WENV181584893
OGKE01023661
[OGKE] metagenome; Human gut stool
378
304
-
Glu
TTC
[ENA]
¢þ
>WENV181624974
OGMK01005128
[OGMK] metagenome; Human gut stool
1478
1404
-
Glu
TTC
[ENA]
¢þ
>WENV181782633
OGRK01042505
[OGRK] human gut metagenome; faeces
8
82
+
Glu
TTC
[ENA]
¢þ
>WENV181879802
OGXF01002303
[OGXF] human gut metagenome; faeces
10515
10589
+
Glu
TTC
[ENA]
¢þ
>WENV181917817
OGYH01000417
[OGYH] human gut metagenome; faeces
39336
39262
-
Glu
TTC
[ENA]
¢þ
>WENV181934536
OGYT01015633
[OGYT] human gut metagenome; faeces
1329
1403
+
Glu
TTC
[ENA]
¢þ
>WENV181945193
OGZB01002531
[OGZB] human gut metagenome; faeces
3620
3546
-
Glu
TTC
[ENA]
¢þ
>WENV181984574
OHAI01021633
[OHAI] human gut metagenome; faeces
1619
1693
+
Glu
TTC
[ENA]
¢þ
>WENV182020146
OHBZ01024111
[OHBZ] human gut metagenome; feces
375
301
-
Glu
TTC
[ENA]
¢þ
>WENV182231813
OHRM01039843
[OHRM] human gut metagenome; feces
116
190
+
Glu
TTC
[ENA]
¢þ
>WENV182254345
OHTB01006923
[OHTB] human gut metagenome; feces
1645
1571
-
Glu
TTC
[ENA]
¢þ
>WENV182426157
OIHN01017755
[OIHN] human gut metagenome; human gut
2
76
+
Glu
TTC
[ENA]
¢þ
>WENV182434096
OIIW01013713
[OIIW] human gut metagenome; human gut
327
401
+
Glu
TTC
[ENA]
¢þ
>WENV182444724
OIKT01003968
[OIKT] human gut metagenome; human gut
705
631
-
Glu
TTC
[ENA]
¢þ
>WENV182465411
OIOM01009174
[OIOM] human gut metagenome; human gut
630
556
-
Glu
TTC
[ENA]
¢þ
>WENV182483256
OIRH01019093
[OIRH] human gut metagenome; human gut
22
96
+
Glu
TTC
[ENA]
¢þ
>WENV182498421
OITN01024269
[OITN] human gut metagenome; human gut
437
511
+
Glu
TTC
[ENA]
¢þ
>WENV182507648
OIVM01008055
[OIVM] human gut metagenome; human gut
620
694
+
Glu
TTC
[ENA]
¢þ
>WENV182596206
OJIY01003111
[OJIY] metagenome; faeces
481
407
-
Glu
TTC
[ENA]
¢þ
>WENV182597650
OJJB01008832
[OJJB] metagenome; faeces
145
72
-
Glu
TTC
[ENA]
¢þ
>WENV182602640
OJJK01004901
[OJJK] metagenome; faeces
516
442
-
Glu
TTC
[ENA]
¢þ
>WENV182668829
OJNJ01007792
[OJNJ] human gut metagenome; feces
1884
1958
+
Glu
TTC
[ENA]
¢þ
>WENV182702119
OJOQ01002172
[OJOQ] human gut metagenome; stool sample
2188
2262
+
Glu
TTC
[ENA]
¢þ
>WENV182730072
OJPY01008377
[OJPY] human gut metagenome; stool sample
502
428
-
Glu
TTC
[ENA]
¢þ
>WENV182746546
OJQU01006388
[OJQU] human gut metagenome; stool sample
2102
2176
+
Glu
TTC
[ENA]
¢þ
>WENV182776184
OJSB01002988
[OJSB] human gut metagenome; human gut
1019
945
-
Glu
TTC
[ENA]
¢þ
>WENV182784008
OJSG01006498
[OJSG] human gut metagenome; human gut
1818
1892
+
Glu
TTC
[ENA]
¢þ
>WENV182786003
OJSI01001693
[OJSI] human gut metagenome; human gut
12966
13040
+
Glu
TTC
[ENA]
¢þ
>WENV182788086
OJSK01007159
[OJSK] human gut metagenome; human gut
1019
945
-
Glu
TTC
[ENA]
¢þ
>WENV182824997
OKCG01000697
[OKCG] human gut metagenome; human gut
10714
10640
-
Glu
TTC
[ENA]
¢þ
>WENV182854222
OKMQ01003558
[OKMQ] human gut metagenome; human gut
837
763
-
Glu
TTC
[ENA]
¢þ
>WENV182858369
OKOD01001173
[OKOD] human gut metagenome; human gut
308
382
+
Glu
TTC
[ENA]
¢þ
>WENV183004659
OLCV01026465
[OLCV] human gut metagenome; human gut
515
589
+
Glu
TTC
[ENA]
¢þ
>WENV183064121
OLIH01001058
[OLIH] metagenome; faeces
3056
3130
+
Glu
TTC
[ENA]
¢þ
>WENV183273630
OLRX01019112
[OLRX] human gut metagenome; faeces
1741
1667
-
Glu
TTC
[ENA]
¢þ
>WENV183355794
OLXD01028569
[OLXD] human gut metagenome; feces
555
481
-
Glu
TTC
[ENA]
¢þ
>WENV183503482
OMGU01001827
[OMGU] human gut metagenome; human gut
10663
10737
+
Glu
TTC
[ENA]
¢þ
>WENV183535908
OOAG01000444
[OOAG] human gut metagenome; human gut
22657
22731
+
Glu
TTC
[ENA]
¢þ
>WENV183547347
OOAU01008953
[OOAU] human gut metagenome; human gut
1381
1455
+
Glu
TTC
[ENA]
¢þ
>WENV183566603
OOCA01008360
[OOCA] human gut metagenome; human gut
1570
1644
+
Glu
TTC
[ENA]
¢þ
>WENV183586688
OOCT01000265
[OOCT] human gut metagenome; human gut
22664
22738
+
Glu
TTC
[ENA]
¢þ
>WENV183752865
PPYE01047109
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
19405
19331
-
Glu
TTC
[ENA]
¢þ
>WENV183754676
PPYE01098286
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
421
495
+
Glu
TTC
[ENA]
¢þ
>WENV183758262
PPYE01180110
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1374
1300
-
Glu
TTC
[ENA]
¢þ
>WENV183762402
PPYE01275722
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
14726
14652
-
Glu
TTC
[ENA]
¢þ
>WENV183763711
PPYE01306918
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
489
563
+
Glu
TTC
[ENA]
¢þ
>WENV183764977
PPYE01323639
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1584
1658
+
Glu
TTC
[ENA]
¢þ
>WENV183770871
PPYE01451305
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1061
987
-
Glu
TTC
[ENA]
¢þ
>WENV170052361
CDZC01016294
[CDZC] gut metagenome; human stools
2163
2237
+
Glu
TTC
[ENA]
¢þ
>WENV170062485
CDZJ01016279
[CDZJ] gut metagenome; human stools
2058
2132
+
Glu
TTC
[ENA]
¢þ
>WENV170540862
CWHM01000008
[CWHM] human gut metagenome; ENVO:feces
323
249
-
Glu
TTC
[ENA]
¢þ
>C181056089
CP022044
Bacillota
Bacillus anthracis FDAARGOS_341 [CP022044]
3045341
3045415
+
Glu
TTC
-
¡û
>C09102098
CP000227
Bacillota
Bacillus cereus Q1 [CP000227]
64305
64376
+
Glu
TTC
[Ensembl]
¡û
>W1910910767
NHMQ01000001
Bacillota
Flavonifractor plautii YL31 [NHMQ]
102620
102546
-
Glu
TTC
[ENA]
¡û
>W1911205130
NRIX01000014
Bacillota
Bacillus anthracis BA721 [NRIX]
95002
95076
+
Glu
TTC
[ENA]
¡û
>W1911205461
NRJB01000013
Bacillota
Bacillus anthracis BAP417 [NRJB]
95002
95076
+
Glu
TTC
[ENA]
¡û
>W1911305087
NTXR01000032
Bacillota
Bacillus thuringiensis AFS006923 [NTXR]
84453
84527
+
Glu
TTC
[ENA]
¡û
>W1911323015
NUHO01000247
Bacillota
Bacillus cereus AFS053130 [NUHO]
633
706
+
Glu
TTC
[ENA]
¡û
>W1911533025
OIXC01000001
Bacillota
Lentibacillus sp. Marseille-P4043 [OIXC]
26269
26195
-
Glu
TTC
[ENA]
¡û
>C151053578
CP009541
Bacillota
Bacillus anthracis str. Sterne [CP009541]
2380298
2380224
-
Glu
TTC
[Ensembl]
¡û
>C161043826
CP012720
Bacillota
Bacillus anthracis PR01 [CP012720]
245199
245273
+
Glu
TTC
-
¡û
>C161044108
CP012723
Bacillota
Bacillus anthracis PR06 [CP012723]
245199
245273
+
Glu
TTC
-
¡û
>C161044390
CP012726
Bacillota
Bacillus anthracis PR09-1 [CP012726]
245199
245273
+
Glu
TTC
-
¡û
>C161044484
CP012727
Bacillota
Bacillus anthracis PR09-4 [CP012727]
245199
245273
+
Glu
TTC
-
¡û
>C161044578
CP012728
Bacillota
Bacillus anthracis PR10-4 [CP012728]
245199
245273
+
Glu
TTC
-
¡û
>C161044672
CP012729
Bacillota
Bacillus anthracis Parent2 [CP012729]
245199
245273
+
Glu
TTC
-
¡û
>W1610002017
ADLO01000011
Bacillota
Flavonifractor plautii 1_3_50AFAA [ADLO]
15061
14987
-
Glu
TTC
[ENA]
¡û
>W1610101534
CYZT01000229
Bacillota
Flavonifractor plautii [CYZT]
3956
3882
-
Glu
TTC
[ENA]
¡û
>W1610102924
CZAS01000027
Bacillota
Flavonifractor plautii [CZAS]
48556
48630
+
Glu
TTC
[ENA]
¡û
>W1710104289
CYZT01000229
Bacillota
Flavonifractor plautii [CYZT]
3956
3882
-
Glu
TTC
[ENA]
¡û
>W1710105679
CZAS01000027
Bacillota
Flavonifractor plautii [CZAS]
48556
48630
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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