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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460769 (45 seq.)
>W1710785713
LJIC01000058
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
5540
5615
+
Thr
CGT
[ENA]
¡û
>W1711505863
MKVX01000005
Alphaproteobacteria
Rhizobiales bacterium 62-47 [MKVX]
447560
447635
+
Thr
CGT
[ENA]
¡û
>W1711783518
MVOD01000017
Alphaproteobacteria
Rhodopseudomonas palustris [MVOD]
58193
58268
+
Thr
CGT
[ENA]
¡û
>C018878
CP000463
Alphaproteobacteria
Rhodopseudomonas palustris [CP000463]
70577
70502
-
Thr
CGT
[Ensembl]
¡û
>C018879
CP000301
Alphaproteobacteria
Rhodopseudomonas palustris [CP000301]
58307
58382
+
Thr
CGT
[Ensembl]
¡û
>C018967
CP000283
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [CP000283]
537639
537564
-
Thr
CGT
[Ensembl]
¡û
>C018976
BX571963
Alphaproteobacteria
Rhodopseudomonas palustris [BX571963]
284219
284294
+
Thr
CGT
[Ensembl]
¡û
>C019068
CP000250
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [CP000250]
354148
354073
-
Thr
CGT
[Ensembl]
¡û
>WENV180255281
OBEQ010710570
[OBEQ] groundwater metagenome; groundwater
389
314
-
Thr
CGT
[ENA]
¢þ
>WENV180308757
OBJR01172921
[OBJR] soil metagenome; soil
28
103
+
Thr
CGT
[ENA]
¢þ
>w001324
AAAF01000015
Alphaproteobacteria
Rhodopseudomonas palustris [AAAF]
83174
83102
-
Thr
CGT
[ENA]
¡û
>WENV180694609
OCZS012481642
[OCZS] soil metagenome; soil
151
76
-
Thr
CGT
[ENA]
¢þ
>WENV181166960
OEIU01004941
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
5862
5937
+
Thr
CGT
[ENA]
¢þ
>W08008849
ABLP01000004
Alphaproteobacteria
Methylocella silvestris BL2 [ABLP]
119957
120032
+
Thr
CGT
[ENA]
¡û
>W141213971
AZSJ01000003
Alphaproteobacteria
Afipia sp. P52-10 [AZSJ]
1682081
1682156
+
Thr
CGT
[ENA]
¡û
>W141223328
BADD01000673
Alphaproteobacteria
Rhodopseudomonas sp. B29 [BADD]
2541
2616
+
Thr
CGT
[ENA]
¡û
>WENV183660357
ORJL010016464
[ORJL] groundwater metagenome; groundwater
1727
1652
-
Thr
CGT
[ENA]
¢þ
>WENV183684916
ORMF010774510
[ORMF] groundwater metagenome; groundwater
704
779
+
Thr
CGT
[ENA]
¢þ
>WENV183736609
PJUC01022660
[PJUC] soil metagenome; Soil enriched on filter paper
151
226
+
Thr
CGT
[ENA]
¢þ
>WENV183740608
PJUF01004376
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
2492
2567
+
Thr
CGT
[ENA]
¢þ
>C181001039
AP014946
Alphaproteobacteria
Variibacter gotjawalensis GJW-30 [AP014946]
50916
50991
+
Thr
CGT
-
¡û
>C181041842
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
283994
284069
+
Thr
CGT
-
¡û
>C181041890
CP019967
Alphaproteobacteria
Rhodopseudomonas palustris YSC3 [CP019967]
287341
287416
+
Thr
CGT
-
¡û
>W09103842
AAKZ01000014
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [AAKZ]
143223
143148
-
Thr
CGT
[ENA]
¡û
>W09103856
AALA01000003
Alphaproteobacteria
Rhodopseudomonas palustris BisA53 [AALA]
207470
207545
+
Thr
CGT
[ENA]
¡û
>W09104383
AALQ01000004
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [AALQ]
227328
227253
-
Thr
CGT
[ENA]
¡û
>W09104430
AALR01000016
Alphaproteobacteria
Rhodopseudomonas palustris BisB18 [AALR]
103374
103449
+
Thr
CGT
[ENA]
¡û
>W09107611
ABJR01000010
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
44974
45049
+
Thr
CGT
[ENA]
¡û
>C191221063
LR590083
Alphaproteobacteria
Beijerinckiaceae bacterium RH AL1 [LR590083]
1911491
1911566
+
Thr
CGT
-
¡û
>W141730473
JNIJ01000019
Alphaproteobacteria
Bradyrhizobium sp. URHD0069 [JNIJ]
64491
64566
+
Thr
CGT
[ENA]
¡û
>C09107920
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
1682146
1682071
-
Thr
CGT
[Ensembl]
¡û
>W1911219156
NRSI01000011
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
44360
44435
+
Thr
CGT
[ENA]
¡û
>W1911760556
QWVU01000010
Alphaproteobacteria
Rhodopseudomonas palustris R1 [QWVU]
309027
308952
-
Thr
CGT
[ENA]
¡û
>W1911809182
QYYC01000040
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.37 [QYYC]
44569
44644
+
Thr
CGT
[ENA]
¡û
>W1911809211
QYYD01000006
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.18 [QYYD]
5603
5678
+
Thr
CGT
[ENA]
¡û
>W1810068811
PDZR01000028
Alphaproteobacteria
Methylocella silvestris TVC [PDZR]
795
720
-
Thr
CGT
[ENA]
¡û
>W1810679440
QKQS01000023
Alphaproteobacteria
Rhodopseudomonas palustris XCP [QKQS]
789675
789750
+
Thr
CGT
[ENA]
¡û
>W10112834
ADFI01000025
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
29568
29643
+
Thr
CGT
[ENA]
¡û
>C10110737
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
276776
276851
+
Thr
CGT
[Ensembl]
¡û
>W11116061
ADFI01000025
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
29568
29643
+
Thr
CGT
[ENA]
¡û
>C11118780
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
413476
413401
-
Thr
CGT
[Ensembl]
¡û
>W1511625959
LCZM01000290
Alphaproteobacteria
Rhodopseudomonas palustris 42OL [LCZM]
15171
15246
+
Thr
CGT
[ENA]
¡û
>W1610649519
LJIC01000058
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
5540
5615
+
Thr
CGT
[ENA]
¡û
>WENV077771
AAFX01104366
Soil microbial communities from Minnesota Farm
239
316
+
Thr
CGT
[ENA]
>W1710548432
FODT01000017
Alphaproteobacteria
Rhodopseudomonas pseudopalustris [FODT]
32847
32922
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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