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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460770 (25 seq.)
>W1710785735
LJIC01000122
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
300
375
+
Lys
TTT
[ENA]
¡û
>W1711783532
MVOD01000020
Alphaproteobacteria
Rhodopseudomonas palustris [MVOD]
359237
359312
+
Lys
TTT
[ENA]
¡û
>C019010
BX571963
Alphaproteobacteria
Rhodopseudomonas palustris [BX571963]
3018528
3018453
-
Lys
TTT
[Ensembl]
¡û
>C019042
CP000250
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [CP000250]
3263143
3263218
+
Lys
TTT
[Ensembl]
¡û
>w001303
AAAF01000014
Alphaproteobacteria
Rhodopseudomonas palustris [AAAF]
501625
501702
+
Lys
TTT
[ENA]
¡û
>WENV183636454
OOKD01002360
[OOKD] human gut metagenome; Skin biopsy
1911
1836
-
Lys
TTT
[ENA]
¢þ
>WENV170551573
CXWJ01012961
[CXWJ] wastewater metagenome; activated sludge
1716
1641
-
Lys
TTT
[ENA]
¢þ
>C181001053
AP014946
Alphaproteobacteria
Variibacter gotjawalensis GJW-30 [AP014946]
3291610
3291685
+
Lys
TTT
-
¡û
>C181041876
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
2932815
2932740
-
Lys
TTT
-
¡û
>C181041923
CP019967
Alphaproteobacteria
Rhodopseudomonas palustris YSC3 [CP019967]
2957653
2957578
-
Lys
TTT
-
¡û
>W09104376
AALQ01000003
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [AALQ]
285427
285352
-
Lys
TTT
[ENA]
¡û
>W09107580
ABJR01000001
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
1177336
1177261
-
Lys
TTT
[ENA]
¡û
>W1911219133
NRSI01000001
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
581043
581118
+
Lys
TTT
[ENA]
¡û
>W1911760585
QWVU01000060
Alphaproteobacteria
Rhodopseudomonas palustris R1 [QWVU]
4961
5036
+
Lys
TTT
[ENA]
¡û
>W1911809157
QYYC01000007
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.37 [QYYC]
56341
56266
-
Lys
TTT
[ENA]
¡û
>W1911809203
QYYD01000001
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.18 [QYYD]
101482
101557
+
Lys
TTT
[ENA]
¡û
>W1810679416
QKQS01000003
Alphaproteobacteria
Rhodopseudomonas palustris XCP [QKQS]
125070
124995
-
Lys
TTT
[ENA]
¡û
>W1810787528
QRDT01000035
Alphaproteobacteria
Rhodopseudomonas pentothenatexigens JA575 [QRDT]
25215
25140
-
Lys
TTT
[ENA]
¡û
>W1810884425
QUMP01000035
Alphaproteobacteria
Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144 [QUMP]
25172
25097
-
Lys
TTT
[ENA]
¡û
>W10112827
ADFI01000016
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
92505
92430
-
Lys
TTT
[ENA]
¡û
>C10110772
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
3192806
3192731
-
Lys
TTT
[Ensembl]
¡û
>W11116054
ADFI01000016
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
92505
92430
-
Lys
TTT
[ENA]
¡û
>C11118753
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
3047627
3047702
+
Lys
TTT
[Ensembl]
¡û
>W1511625956
LCZM01000249
Alphaproteobacteria
Rhodopseudomonas palustris 42OL [LCZM]
736
661
-
Lys
TTT
[ENA]
¡û
>W1610649541
LJIC01000122
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
300
375
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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