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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460796 (98 seq.)
>W1711228141
LXWI01000017
Campylobacterota
Helicobacter pullorum [LXWI]
14785
14860
+
Trp
CCA
[ENA]
¡û
>W1711302765
MAJF01000014
Campylobacterota
Helicobacter pullorum [MAJF]
38656
38731
+
Trp
CCA
[ENA]
¡û
>W1711302795
MAJG01000003
Campylobacterota
Helicobacter pullorum [MAJG]
34981
34906
-
Trp
CCA
[ENA]
¡û
>W1711306339
MANJ01000012
Campylobacterota
Helicobacter pullorum [MANJ]
38682
38757
+
Trp
CCA
[ENA]
¡û
>W1711306365
MANK01000003
Campylobacterota
Helicobacter pullorum [MANK]
34996
34921
-
Trp
CCA
[ENA]
¡û
>W1711307554
MAOZ01000018
Campylobacterota
Helicobacter pullorum [MAOZ]
52381
52456
+
Trp
CCA
[ENA]
¡û
>W1711307579
MAPA01000020
Campylobacterota
Helicobacter pullorum [MAPA]
12295
12220
-
Trp
CCA
[ENA]
¡û
>W1711307621
MAPB01000014
Campylobacterota
Helicobacter pullorum [MAPB]
44504
44579
+
Trp
CCA
[ENA]
¡û
>W1711307649
MAPC01000013
Campylobacterota
Helicobacter pullorum [MAPC]
34995
34920
-
Trp
CCA
[ENA]
¡û
>W1711307688
MAPD01000020
Campylobacterota
Helicobacter pullorum [MAPD]
10995
11070
+
Trp
CCA
[ENA]
¡û
>W1711307715
MAPE01000003
Campylobacterota
Helicobacter pullorum [MAPE]
44975
45050
+
Trp
CCA
[ENA]
¡û
>WENV181203528
OERW01000626
[OERW] metagenome; Caecal content
1403
1478
+
Trp
CCA
[ENA]
¢þ
>WENV181537830
OGHX01004836
[OGHX] metagenome; Human gut stool
1419
1344
-
Trp
CCA
[ENA]
¢þ
>W08010294
ABQS01000049
Campylobacterota
Helicobacter canadensis MIT 98-5491 [ABQS]
13350
13278
-
Trp
CCA
[ENA]
¡û
>W08010319
ABQT01000004
Campylobacterota
Helicobacter cinaedi CCUG 18818 [ABQT]
14754
14682
-
Trp
CCA
[ENA]
¡û
>W08010359
ABQU01000022
Campylobacterota
Helicobacter pullorum MIT 98-5489 [ABQU]
36916
36844
-
Trp
CCA
[ENA]
¡û
>W141275701
JADE01000007
Campylobacterota
Helicobacter pametensis ATCC 51478 [JADE]
43732
43807
+
Trp
CCA
[ENA]
¡û
>WENV183073923
OLIU01003054
[OLIU] human gut metagenome; stool sample
4770
4845
+
Trp
CCA
[ENA]
¢þ
>WENV170635953
JFBN01012145
[JFBN] chicken gut metagenome; ceca of Broiler chicken
35034
34959
-
Trp
CCA
[ENA]
¢þ
>W09134331
ACSF01000002
Campylobacterota
Helicobacter canadensis MIT 98-5491(ACSF) [ACSF]
144686
144761
+
Trp
CCA
[ENA]
¡û
>C181213865
LS483446
Campylobacterota
Helicobacter mustelae NCTC12198 [LS483446]
370979
371054
+
Trp
CCA
-
¡û
>C191000219
AP017374
Campylobacterota
Helicobacter cinaedi MRY08-1234 [AP017374]
1622710
1622635
-
Trp
CCA
-
¡û
>C191002294
AP018446
Campylobacterota
Helicobacter cinaedi P03D0629 [AP018446]
1644647
1644572
-
Trp
CCA
-
¡û
>C191002330
AP018447
Campylobacterota
Helicobacter cinaedi P06D0798 [AP018447]
1606101
1606026
-
Trp
CCA
-
¡û
>C191003923
AP018676
Campylobacterota
Helicobacter cinaedi P01D0000 [AP018676]
1591686
1591611
-
Trp
CCA
-
¡û
>C191213256
LR134509
Campylobacterota
Helicobacter pullorum NCTC13154 [LR134509]
1532185
1532110
-
Trp
CCA
-
¡û
>W1910546136
FZMI01000024
Campylobacterota
Helicobacter cinaedi [FZMI]
52266
52191
-
Trp
CCA
[ENA]
¡û
>W1910546165
FZMJ01000010
Campylobacterota
Helicobacter cinaedi [FZMJ]
31498
31423
-
Trp
CCA
[ENA]
¡û
>W1910546592
FZMV01000006
Campylobacterota
Helicobacter pullorum [FZMV]
34978
34903
-
Trp
CCA
[ENA]
¡û
>W1910546669
FZMX01000008
Campylobacterota
Helicobacter pullorum [FZMX]
34002
33927
-
Trp
CCA
[ENA]
¡û
>W1910549556
FZPI01000004
Campylobacterota
Helicobacter pametensis [FZPI]
127545
127470
-
Trp
CCA
[ENA]
¡û
>W1910549660
FZPL01000005
Campylobacterota
Helicobacter pametensis [FZPL]
127544
127469
-
Trp
CCA
[ENA]
¡û
>W1910549732
FZPN01000011
Campylobacterota
Helicobacter canadensis [FZPN]
27044
26969
-
Trp
CCA
[ENA]
¡û
>W1910549767
FZPO01000058
Campylobacterota
Helicobacter equorum [FZPO]
21772
21847
+
Trp
CCA
[ENA]
¡û
>W1910550312
FZQU01000004
Campylobacterota
Helicobacter sp. 'CLO3_human' [FZQU]
18515
18440
-
Trp
CCA
[ENA]
¡û
>W1910550489
FZQY01000005
Campylobacterota
Helicobacter sp. 'house sparrow 1' [FZQY]
65352
65427
+
Trp
CCA
[ENA]
¡û
>W1910584296
JXTW01000006
Campylobacterota
Helicobacter anseris 2013ZJHSD2 [JXTW]
31936
32011
+
Trp
CCA
[ENA]
¡û
>W1910584332
JXTX01000005
Campylobacterota
Helicobacter pullorum 2013BJHL [JXTX]
39281
39206
-
Trp
CCA
[ENA]
¡û
>W1910756054
MLAM01000001
Campylobacterota
Helicobacter sp. 11S02596-1 [MLAM]
87498
87423
-
Trp
CCA
[ENA]
¡û
>W1910756180
MLAP01000008
Campylobacterota
Helicobacter sp. 12S02634-8 [MLAP]
46445
46370
-
Trp
CCA
[ENA]
¡û
>W1910756261
MLAS01000001
Campylobacterota
Helicobacter sp. 13S00477-4 [MLAS]
264086
264011
-
Trp
CCA
[ENA]
¡û
>W1910852893
NBIU01000003
Campylobacterota
Helicobacter valdiviensis WBE14 [NBIU]
69161
69236
+
Trp
CCA
[ENA]
¡û
>W1910889343
NESU01000004
Campylobacterota
Helicobacter sp. TUL [NESU]
80618
80543
-
Trp
CCA
[ENA]
¡û
>W1910914955
NHYL01000001
Campylobacterota
Helicobacter sp. 11-8110 [NHYL]
560015
560090
+
Trp
CCA
[ENA]
¡û
>W1911770807
QXJF01000005
Campylobacterota
Helicobacter labetoulli 48519 [QXJF]
21043
21118
+
Trp
CCA
[ENA]
¡û
>W1911770846
QXJG01000004
Campylobacterota
Helicobacter burdigaliensis CNRCH 2005/566H [QXJG]
53299
53374
+
Trp
CCA
[ENA]
¡û
>W1810002664
BEYY01000086
Campylobacterota
Helicobacter cinaedi P04D0736 [BEYY]
81410
81335
-
Trp
CCA
[ENA]
¡û
>W1810002711
BEYZ01000169
Campylobacterota
Helicobacter cinaedi P05D0741 [BEYZ]
10606
10681
+
Trp
CCA
[ENA]
¡û
>W1810002753
BEZB01000228
Campylobacterota
Helicobacter cinaedi P07D0876 [BEZB]
26625
26550
-
Trp
CCA
[ENA]
¡û
>W1810002783
BEZC01000191
Campylobacterota
Helicobacter cinaedi P08D0905 [BEZC]
10609
10684
+
Trp
CCA
[ENA]
¡û
>W1810002811
BEZD01000069
Campylobacterota
Helicobacter cinaedi P09D0927 [BEZD]
81405
81330
-
Trp
CCA
[ENA]
¡û
>W1810002853
BEZE01000189
Campylobacterota
Helicobacter cinaedi P10D0937 [BEZE]
10607
10682
+
Trp
CCA
[ENA]
¡û
>W1810002890
BEZF01000157
Campylobacterota
Helicobacter cinaedi P11D0946 [BEZF]
10619
10694
+
Trp
CCA
[ENA]
¡û
>W1810002917
BEZG01000061
Campylobacterota
Helicobacter cinaedi P13D0979 [BEZG]
81388
81313
-
Trp
CCA
[ENA]
¡û
>W1810002957
BEZH01000046
Campylobacterota
Helicobacter cinaedi P14D1067 [BEZH]
10593
10668
+
Trp
CCA
[ENA]
¡û
>W1810002996
BEZI01000155
Campylobacterota
Helicobacter cinaedi P17D1144 [BEZI]
10587
10662
+
Trp
CCA
[ENA]
¡û
>W1810003043
BEZJ01000135
Campylobacterota
Helicobacter cinaedi P18D1268 [BEZJ]
10592
10667
+
Trp
CCA
[ENA]
¡û
>W1810003080
BEZK01000127
Campylobacterota
Helicobacter cinaedi P19D1315 [BEZK]
10591
10666
+
Trp
CCA
[ENA]
¡û
>W1810003094
BEZL01000051
Campylobacterota
Helicobacter cinaedi P20D1835 [BEZL]
81371
81296
-
Trp
CCA
[ENA]
¡û
>W1810003132
BEZM01000053
Campylobacterota
Helicobacter cinaedi CCUG18818 [BEZM]
8938
8863
-
Trp
CCA
[ENA]
¡û
>W1810003170
BEZN01000058
Campylobacterota
Helicobacter cinaedi P21D1863 [BEZN]
81397
81322
-
Trp
CCA
[ENA]
¡û
>W1810003224
BEZO01000202
Campylobacterota
Helicobacter cinaedi P02D0213 [BEZO]
10614
10689
+
Trp
CCA
[ENA]
¡û
>W1810003254
BEZP01000186
Campylobacterota
Helicobacter cinaedi P15D1072 [BEZP]
10601
10676
+
Trp
CCA
[ENA]
¡û
>W1810003283
BEZQ01000140
Campylobacterota
Helicobacter cinaedi P16D1106 [BEZQ]
19935
19860
-
Trp
CCA
[ENA]
¡û
>W1810003330
BEZR01000169
Campylobacterota
Helicobacter cinaedi P12D0946 [BEZR]
10637
10712
+
Trp
CCA
[ENA]
¡û
>W1810003356
BEZS01000063
Campylobacterota
Helicobacter cinaedi P11D1015 [BEZS]
81440
81365
-
Trp
CCA
[ENA]
¡û
>W1810010690
BGKD01000059
Campylobacterota
Helicobacter cinaedi CCUG19503 [BGKD]
10602
10677
+
Trp
CCA
[ENA]
¡û
>W1810010721
BGKE01000052
Campylobacterota
Helicobacter cinaedi CCUG19504 [BGKE]
10615
10690
+
Trp
CCA
[ENA]
¡û
>W1810010764
BGKF01000039
Campylobacterota
Helicobacter cinaedi PAGU617 [BGKF]
52375
52300
-
Trp
CCA
[ENA]
¡û
>W1810010808
BGKG01000187
Campylobacterota
Helicobacter cinaedi PAGU1382 [BGKG]
61030
60955
-
Trp
CCA
[ENA]
¡û
>W1810010839
BGKH01000051
Campylobacterota
Helicobacter cinaedi PAGU628 [BGKH]
10630
10705
+
Trp
CCA
[ENA]
¡û
>W1810046657
NXLT01000003
Campylobacterota
Helicobacter equorum MIT 12-6600 [NXLT]
34714
34789
+
Trp
CCA
[ENA]
¡û
>W1810046741
NXLV01000014
Campylobacterota
Helicobacter brantae MIT 04-9366 [NXLV]
21246
21171
-
Trp
CCA
[ENA]
¡û
>W1810046809
NXLX01000007
Campylobacterota
Helicobacter anseris MIT 04-9362 [NXLX]
18945
18870
-
Trp
CCA
[ENA]
¡û
>C10107583
FN555004
Campylobacterota
Helicobacter mustelae 12198 [FN555004]
372466
372541
+
Trp
CCA
[Ensembl]
¡û
>W1511350780
JRMQ01000001
Campylobacterota
Helicobacter japonicus MIT 01-6451 [JRMQ]
108194
108119
-
Trp
CCA
[ENA]
¡û
>W1511353335
JRPE01000052
Campylobacterota
Helicobacter magdeburgensis MIT 96-1001 [JRPE]
10863
10938
+
Trp
CCA
[ENA]
¡û
>C121001368
AP012344
Campylobacterota
Helicobacter cinaedi PAGU611 [AP012344]
1507640
1507565
-
Trp
CCA
[Ensembl]
¡û
>C131000555
AP012492
Campylobacterota
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 [AP012492]
1644242
1644167
-
Trp
CCA
[Ensembl]
¡û
>W1610522066
JNOA01000019
Campylobacterota
Helicobacter pullorum [JNOA]
34938
34863
-
Trp
CCA
[ENA]
¡û
>W1610522101
JNOB01000018
Campylobacterota
Helicobacter pullorum [JNOB]
35046
34971
-
Trp
CCA
[ENA]
¡û
>W1610522136
JNOC01000029
Campylobacterota
Helicobacter pullorum [JNOC]
34994
34919
-
Trp
CCA
[ENA]
¡û
>W1610522224
JNUR01000014
Campylobacterota
Helicobacter pullorum [JNUR]
34985
34910
-
Trp
CCA
[ENA]
¡û
>W1611012058
LXWI01000017
Campylobacterota
Helicobacter pullorum [LXWI]
14785
14860
+
Trp
CCA
[ENA]
¡û
>W1611053090
MAJF01000014
Campylobacterota
Helicobacter pullorum [MAJF]
38656
38731
+
Trp
CCA
[ENA]
¡û
>W1611053120
MAJG01000003
Campylobacterota
Helicobacter pullorum [MAJG]
34981
34906
-
Trp
CCA
[ENA]
¡û
>W1611055693
MANJ01000012
Campylobacterota
Helicobacter pullorum [MANJ]
38682
38757
+
Trp
CCA
[ENA]
¡û
>W1611055719
MANK01000003
Campylobacterota
Helicobacter pullorum [MANK]
34996
34921
-
Trp
CCA
[ENA]
¡û
>W1611055837
MAOZ01000018
Campylobacterota
Helicobacter pullorum [MAOZ]
52381
52456
+
Trp
CCA
[ENA]
¡û
>W1611055862
MAPA01000020
Campylobacterota
Helicobacter pullorum [MAPA]
12295
12220
-
Trp
CCA
[ENA]
¡û
>W1611055904
MAPB01000014
Campylobacterota
Helicobacter pullorum [MAPB]
44504
44579
+
Trp
CCA
[ENA]
¡û
>W1611055932
MAPC01000013
Campylobacterota
Helicobacter pullorum [MAPC]
34995
34920
-
Trp
CCA
[ENA]
¡û
>W1611055971
MAPD01000020
Campylobacterota
Helicobacter pullorum [MAPD]
10995
11070
+
Trp
CCA
[ENA]
¡û
>W1611055998
MAPE01000003
Campylobacterota
Helicobacter pullorum [MAPE]
44975
45050
+
Trp
CCA
[ENA]
¡û
>W1710621992
JNOA01000019
Campylobacterota
Helicobacter pullorum [JNOA]
34938
34863
-
Trp
CCA
[ENA]
¡û
>W1710622027
JNOB01000018
Campylobacterota
Helicobacter pullorum [JNOB]
35046
34971
-
Trp
CCA
[ENA]
¡û
>W1710622062
JNOC01000029
Campylobacterota
Helicobacter pullorum [JNOC]
34994
34919
-
Trp
CCA
[ENA]
¡û
>W1710622150
JNUR01000014
Campylobacterota
Helicobacter pullorum [JNUR]
34985
34910
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK