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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460812 (102 seq.)
>W1711228149
LXWI01000031
Campylobacterota
Helicobacter pullorum [LXWI]
4354
4279
-
Phe
GAA
[ENA]
¡û
>W1711302780
MAJF01000023
Campylobacterota
Helicobacter pullorum [MAJF]
52202
52277
+
Phe
GAA
[ENA]
¡û
>W1711302805
MAJG01000024
Campylobacterota
Helicobacter pullorum [MAJG]
35462
35537
+
Phe
GAA
[ENA]
¡û
>W1711306331
MANJ01000008
Campylobacterota
Helicobacter pullorum [MANJ]
4387
4312
-
Phe
GAA
[ENA]
¡û
>W1711306371
MANK01000011
Campylobacterota
Helicobacter pullorum [MANK]
50374
50449
+
Phe
GAA
[ENA]
¡û
>W1711307533
MAOZ01000003
Campylobacterota
Helicobacter pullorum [MAOZ]
4384
4309
-
Phe
GAA
[ENA]
¡û
>W1711307586
MAPA01000033
Campylobacterota
Helicobacter pullorum [MAPA]
32322
32397
+
Phe
GAA
[ENA]
¡û
>W1711307631
MAPB01000039
Campylobacterota
Helicobacter pullorum [MAPB]
4372
4297
-
Phe
GAA
[ENA]
¡û
>W1711307641
MAPC01000005
Campylobacterota
Helicobacter pullorum [MAPC]
48952
49027
+
Phe
GAA
[ENA]
¡û
>W1711307694
MAPD01000028
Campylobacterota
Helicobacter pullorum [MAPD]
23411
23486
+
Phe
GAA
[ENA]
¡û
>W1711307725
MAPE01000011
Campylobacterota
Helicobacter pullorum [MAPE]
32731
32806
+
Phe
GAA
[ENA]
¡û
>W131241827
BASD01000009
Campylobacterota
Helicobacter fennelliae MRY12-0050 [BASD]
46582
46657
+
Phe
GAA
[ENA]
¡û
>C010565
AE017125
Campylobacterota
Helicobacter hepaticus ATCC 51449 [AE017125]
1128081
1128006
-
Phe
GAA
[Ensembl]
¡û
>WENV181197040
OEQZ01012758
[OEQZ] metagenome; Caecal content
242
317
+
Phe
GAA
[ENA]
¢þ
>WENV181203564
OERW01001736
[OERW] metagenome; Caecal content
2511
2586
+
Phe
GAA
[ENA]
¢þ
>W08010324
ABQT01000013
Campylobacterota
Helicobacter cinaedi CCUG 18818 [ABQT]
212140
212068
-
Phe
GAA
[ENA]
¡û
>W08010349
ABQU01000006
Campylobacterota
Helicobacter pullorum MIT 98-5489 [ABQU]
46446
46521
+
Phe
GAA
[ENA]
¡û
>W141204196
AZJI01000001
Campylobacterota
Helicobacter macacae MIT 99-5501 [AZJI]
45110
45185
+
Phe
GAA
[ENA]
¡û
>W141204241
AZJJ01000001
Campylobacterota
Helicobacter canis NCTC 12740 [AZJJ]
798443
798368
-
Phe
GAA
[ENA]
¡û
>WENV170635928
JFBN01012072
[JFBN] chicken gut metagenome; ceca of Broiler chicken
46496
46571
+
Phe
GAA
[ENA]
¢þ
>C181054478
CP021886
Campylobacterota
Helicobacter apodemus SCJK1 [CP021886]
1297721
1297796
+
Phe
GAA
-
¡û
>C191000227
AP017374
Campylobacterota
Helicobacter cinaedi MRY08-1234 [AP017374]
25656
25581
-
Phe
GAA
-
¡û
>C191002302
AP018446
Campylobacterota
Helicobacter cinaedi P03D0629 [AP018446]
25653
25578
-
Phe
GAA
-
¡û
>C191002340
AP018447
Campylobacterota
Helicobacter cinaedi P06D0798 [AP018447]
21452
21377
-
Phe
GAA
-
¡û
>C191003933
AP018676
Campylobacterota
Helicobacter cinaedi P01D0000 [AP018676]
20935
20860
-
Phe
GAA
-
¡û
>C191213262
LR134509
Campylobacterota
Helicobacter pullorum NCTC13154 [LR134509]
1260777
1260702
-
Phe
GAA
-
¡û
>W141558666
JHWC01000003
Campylobacterota
Helicobacter rodentium ATCC 700285 [JHWC]
78654
78579
-
Phe
GAA
[ENA]
¡û
>W09119164
ACDO01000007
Campylobacterota
Helicobacter winghamensis ATCC BAA-430 [ACDO]
86412
86337
-
Phe
GAA
[ENA]
¡û
>W1910546125
FZMI01000014
Campylobacterota
Helicobacter cinaedi [FZMI]
3215
3290
+
Phe
GAA
[ENA]
¡û
>W1910546155
FZMJ01000007
Campylobacterota
Helicobacter cinaedi [FZMJ]
9383
9458
+
Phe
GAA
[ENA]
¡û
>W1910546595
FZMV01000009
Campylobacterota
Helicobacter pullorum [FZMV]
53694
53769
+
Phe
GAA
[ENA]
¡û
>W1910546683
FZMX01000017
Campylobacterota
Helicobacter pullorum [FZMX]
4633
4558
-
Phe
GAA
[ENA]
¡û
>W1910549583
FZPJ01000010
Campylobacterota
Helicobacter mesocricetorum [FZPJ]
21509
21434
-
Phe
GAA
[ENA]
¡û
>W1910549790
FZPP01000010
Campylobacterota
Helicobacter marmotae [FZPP]
32706
32781
+
Phe
GAA
[ENA]
¡û
>W1910584316
JXTX01000001
Campylobacterota
Helicobacter pullorum 2013BJHL [JXTX]
197372
197297
-
Phe
GAA
[ENA]
¡û
>W1910663811
MBPH01000035
Campylobacterota
Helicobacter winghamensis 196_13 [MBPH]
2025
2100
+
Phe
GAA
[ENA]
¡û
>W1910663847
MBPI01000033
Campylobacterota
Helicobacter winghamensis 228_13 [MBPI]
2047
2122
+
Phe
GAA
[ENA]
¡û
>W1910663884
MBPJ01000041
Campylobacterota
Helicobacter winghamensis 294_13 [MBPJ]
2038
2113
+
Phe
GAA
[ENA]
¡û
>W1910663920
MBPK01000042
Campylobacterota
Helicobacter winghamensis 295_13 [MBPK]
2038
2113
+
Phe
GAA
[ENA]
¡û
>W1910663954
MBPL01000044
Campylobacterota
Helicobacter winghamensis 296_13 [MBPL]
2038
2113
+
Phe
GAA
[ENA]
¡û
>W1911770833
QXJF01000024
Campylobacterota
Helicobacter labetoulli 48519 [QXJF]
8236
8311
+
Phe
GAA
[ENA]
¡û
>W1810002653
BEYY01000021
Campylobacterota
Helicobacter cinaedi P04D0736 [BEYY]
11667
11592
-
Phe
GAA
[ENA]
¡û
>W1810002694
BEYZ01000091
Campylobacterota
Helicobacter cinaedi P05D0741 [BEYZ]
11667
11592
-
Phe
GAA
[ENA]
¡û
>W1810002743
BEZB01000210
Campylobacterota
Helicobacter cinaedi P07D0876 [BEZB]
11668
11593
-
Phe
GAA
[ENA]
¡û
>W1810002790
BEZC01000266
Campylobacterota
Helicobacter cinaedi P08D0905 [BEZC]
11648
11573
-
Phe
GAA
[ENA]
¡û
>W1810002797
BEZD01000008
Campylobacterota
Helicobacter cinaedi P09D0927 [BEZD]
11658
11583
-
Phe
GAA
[ENA]
¡û
>W1810002863
BEZE01000268
Campylobacterota
Helicobacter cinaedi P10D0937 [BEZE]
11563
11488
-
Phe
GAA
[ENA]
¡û
>W1810002904
BEZF01000258
Campylobacterota
Helicobacter cinaedi P11D0946 [BEZF]
11653
11578
-
Phe
GAA
[ENA]
¡û
>W1810002905
BEZG01000042
Campylobacterota
Helicobacter cinaedi P13D0979 [BEZG]
11654
11579
-
Phe
GAA
[ENA]
¡û
>W1810002963
BEZH01000094
Campylobacterota
Helicobacter cinaedi P14D1067 [BEZH]
11667
11592
-
Phe
GAA
[ENA]
¡û
>W1810003003
BEZI01000168
Campylobacterota
Helicobacter cinaedi P17D1144 [BEZI]
11650
11575
-
Phe
GAA
[ENA]
¡û
>W1810003018
BEZJ01000058
Campylobacterota
Helicobacter cinaedi P18D1268 [BEZJ]
14192
14267
+
Phe
GAA
[ENA]
¡û
>W1810003053
BEZK01000030
Campylobacterota
Helicobacter cinaedi P19D1315 [BEZK]
14203
14278
+
Phe
GAA
[ENA]
¡û
>W1810003099
BEZL01000096
Campylobacterota
Helicobacter cinaedi P20D1835 [BEZL]
14327
14402
+
Phe
GAA
[ENA]
¡û
>W1810003122
BEZM01000020
Campylobacterota
Helicobacter cinaedi CCUG18818 [BEZM]
85367
85292
-
Phe
GAA
[ENA]
¡û
>W1810003177
BEZN01000145
Campylobacterota
Helicobacter cinaedi P21D1863 [BEZN]
15289
15214
-
Phe
GAA
[ENA]
¡û
>W1810003215
BEZO01000194
Campylobacterota
Helicobacter cinaedi P02D0213 [BEZO]
7446
7371
-
Phe
GAA
[ENA]
¡û
>W1810003259
BEZP01000219
Campylobacterota
Helicobacter cinaedi P15D1072 [BEZP]
11646
11571
-
Phe
GAA
[ENA]
¡û
>W1810003265
BEZQ01000024
Campylobacterota
Helicobacter cinaedi P16D1106 [BEZQ]
11653
11578
-
Phe
GAA
[ENA]
¡û
>W1810003315
BEZR01000112
Campylobacterota
Helicobacter cinaedi P12D0946 [BEZR]
11667
11592
-
Phe
GAA
[ENA]
¡û
>W1810003344
BEZS01000032
Campylobacterota
Helicobacter cinaedi P11D1015 [BEZS]
11654
11579
-
Phe
GAA
[ENA]
¡û
>W1810010675
BGKD01000004
Campylobacterota
Helicobacter cinaedi CCUG19503 [BGKD]
89274
89199
-
Phe
GAA
[ENA]
¡û
>W1810010744
BGKE01000185
Campylobacterota
Helicobacter cinaedi CCUG19504 [BGKE]
14154
14229
+
Phe
GAA
[ENA]
¡û
>W1810010782
BGKF01000199
Campylobacterota
Helicobacter cinaedi PAGU617 [BGKF]
8212
8137
-
Phe
GAA
[ENA]
¡û
>W1810010798
BGKG01000125
Campylobacterota
Helicobacter cinaedi PAGU1382 [BGKG]
11652
11577
-
Phe
GAA
[ENA]
¡û
>W1810010845
BGKH01000072
Campylobacterota
Helicobacter cinaedi PAGU628 [BGKH]
7252
7177
-
Phe
GAA
[ENA]
¡û
>W1810046437
NXLN01000008
Campylobacterota
Helicobacter sp. MIT 01-3238 [NXLN]
27604
27679
+
Phe
GAA
[ENA]
¡û
>W1810046608
NXLR01000012
Campylobacterota
Helicobacter marmotae MIT 98-6070 [NXLR]
32475
32550
+
Phe
GAA
[ENA]
¡û
>W1810046633
NXLS01000006
Campylobacterota
Helicobacter ganmani MIT 99-5101 [NXLS]
93457
93532
+
Phe
GAA
[ENA]
¡û
>W1511350781
JRMQ01000002
Campylobacterota
Helicobacter japonicus MIT 01-6451 [JRMQ]
368038
368113
+
Phe
GAA
[ENA]
¡û
>W1511350795
JRMQ01000004
Campylobacterota
Helicobacter japonicus MIT 01-6451 [JRMQ]
59636
59561
-
Phe
GAA
[ENA]
¡û
>W1511350860
JRMS01000041
Campylobacterota
Helicobacter sp. MIT 03-1614 [JRMS]
13641
13566
-
Phe
GAA
[ENA]
¡û
>W1511353106
JROY01000012
Campylobacterota
Helicobacter sp. MIT 03-1616 [JROY]
24616
24691
+
Phe
GAA
[ENA]
¡û
>W1511353161
JROZ01000011
Campylobacterota
Helicobacter sp. MIT 05-5293 [JROZ]
13637
13712
+
Phe
GAA
[ENA]
¡û
>W1511353198
JRPB01000001
Campylobacterota
Helicobacter sp. MIT 11-5569 [JRPB]
8773
8848
+
Phe
GAA
[ENA]
¡û
>W1511353212
JRPB01000004
Campylobacterota
Helicobacter sp. MIT 11-5569 [JRPB]
1994
2069
+
Phe
GAA
[ENA]
¡û
>W1511353253
JRPC01000046
Campylobacterota
Helicobacter apodemus MIT-03-7007 [JRPC]
2275
2350
+
Phe
GAA
[ENA]
¡û
>W1511353336
JRPE01000064
Campylobacterota
Helicobacter magdeburgensis MIT 96-1001 [JRPE]
7153
7228
+
Phe
GAA
[ENA]
¡û
>W1511353373
JRPF01000002
Campylobacterota
Helicobacter typhlonius MIT 98-6810 [JRPF]
459419
459494
+
Phe
GAA
[ENA]
¡û
>W1511353836
JRPR01000003
Campylobacterota
Helicobacter jaachi MIT 09-6949 [JRPR]
48279
48204
-
Phe
GAA
[ENA]
¡û
>C121001375
AP012344
Campylobacterota
Helicobacter cinaedi PAGU611 [AP012344]
25482
25407
-
Phe
GAA
[Ensembl]
¡û
>C161108049
LN907858
Campylobacterota
Helicobacter typhlonius [LN907858]
1918163
1918238
+
Phe
GAA
[Ensembl]
¡û
>C131000565
AP012492
Campylobacterota
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 [AP012492]
21446
21371
-
Phe
GAA
[Ensembl]
¡û
>W1610522056
JNOA01000006
Campylobacterota
Helicobacter pullorum [JNOA]
46649
46724
+
Phe
GAA
[ENA]
¡û
>W1610522091
JNOB01000002
Campylobacterota
Helicobacter pullorum [JNOB]
48806
48881
+
Phe
GAA
[ENA]
¡û
>W1610522122
JNOC01000015
Campylobacterota
Helicobacter pullorum [JNOC]
118104
118179
+
Phe
GAA
[ENA]
¡û
>W1610522212
JNUR01000005
Campylobacterota
Helicobacter pullorum [JNUR]
46071
46146
+
Phe
GAA
[ENA]
¡û
>W1611012066
LXWI01000031
Campylobacterota
Helicobacter pullorum [LXWI]
4354
4279
-
Phe
GAA
[ENA]
¡û
>W1611053105
MAJF01000023
Campylobacterota
Helicobacter pullorum [MAJF]
52202
52277
+
Phe
GAA
[ENA]
¡û
>W1611053130
MAJG01000024
Campylobacterota
Helicobacter pullorum [MAJG]
35462
35537
+
Phe
GAA
[ENA]
¡û
>W1611055685
MANJ01000008
Campylobacterota
Helicobacter pullorum [MANJ]
4387
4312
-
Phe
GAA
[ENA]
¡û
>W1611055725
MANK01000011
Campylobacterota
Helicobacter pullorum [MANK]
50374
50449
+
Phe
GAA
[ENA]
¡û
>W1611055816
MAOZ01000003
Campylobacterota
Helicobacter pullorum [MAOZ]
4384
4309
-
Phe
GAA
[ENA]
¡û
>W1611055869
MAPA01000033
Campylobacterota
Helicobacter pullorum [MAPA]
32322
32397
+
Phe
GAA
[ENA]
¡û
>W1611055914
MAPB01000039
Campylobacterota
Helicobacter pullorum [MAPB]
4372
4297
-
Phe
GAA
[ENA]
¡û
>W1611055924
MAPC01000005
Campylobacterota
Helicobacter pullorum [MAPC]
48952
49027
+
Phe
GAA
[ENA]
¡û
>W1611055977
MAPD01000028
Campylobacterota
Helicobacter pullorum [MAPD]
23411
23486
+
Phe
GAA
[ENA]
¡û
>W1611056008
MAPE01000011
Campylobacterota
Helicobacter pullorum [MAPE]
32731
32806
+
Phe
GAA
[ENA]
¡û
>W1710621982
JNOA01000006
Campylobacterota
Helicobacter pullorum [JNOA]
46649
46724
+
Phe
GAA
[ENA]
¡û
>W1710622017
JNOB01000002
Campylobacterota
Helicobacter pullorum [JNOB]
48806
48881
+
Phe
GAA
[ENA]
¡û
>W1710622048
JNOC01000015
Campylobacterota
Helicobacter pullorum [JNOC]
118104
118179
+
Phe
GAA
[ENA]
¡û
>W1710622138
JNUR01000005
Campylobacterota
Helicobacter pullorum [JNUR]
46071
46146
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK