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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460865 (82 seq.)
>WENV180008904
FLSB01210528
[FLSB] metagenome; saliva
82
7
-
Val
TAC
[ENA]
¢þ
>WENV180725936
ODGS01009354
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
581
506
-
Val
TAC
[ENA]
¢þ
>WENV180732218
ODGY01000003
[ODGY] human metagenome; G_DNA_Supragingival plaque
16011
16086
+
Val
TAC
[ENA]
¢þ
>WENV180735769
ODHB01000603
[ODHB] human metagenome; G_DNA_Supragingival plaque
5795
5870
+
Val
TAC
[ENA]
¢þ
>WENV180738442
ODHD01000032
[ODHD] human metagenome; G_DNA_Supragingival plaque
95433
95358
-
Val
TAC
[ENA]
¢þ
>WENV180750054
ODHS01000317
[ODHS] human metagenome; G_DNA_Supragingival plaque
9399
9324
-
Val
TAC
[ENA]
¢þ
>WENV180754737
ODHU01000476
[ODHU] human metagenome; G_DNA_Supragingival plaque
11476
11551
+
Val
TAC
[ENA]
¢þ
>WENV180764604
ODIB01000099
[ODIB] human metagenome; G_DNA_Supragingival plaque
674
599
-
Val
TAC
[ENA]
¢þ
>WENV180778146
ODIM01000874
[ODIM] human metagenome; G_DNA_Supragingival plaque
7574
7649
+
Val
TAC
[ENA]
¢þ
>WENV180781527
ODIP01000504
[ODIP] human metagenome; G_DNA_Supragingival plaque
1761
1686
-
Val
TAC
[ENA]
¢þ
>WENV180797283
ODJB01043514
[ODJB] human metagenome; G_DNA_Supragingival plaque
37
112
+
Val
TAC
[ENA]
¢þ
>WENV180800663
ODJD01000397
[ODJD] human metagenome; G_DNA_Supragingival plaque
7741
7666
-
Val
TAC
[ENA]
¢þ
>WENV180803591
ODJG01000001
[ODJG] human metagenome; G_DNA_Supragingival plaque
285439
285514
+
Val
TAC
[ENA]
¢þ
>WENV180808902
ODJK01001734
[ODJK] human metagenome; G_DNA_Subgingival plaque
9451
9526
+
Val
TAC
[ENA]
¢þ
>WENV180812883
ODJO01000001
[ODJO] human metagenome; G_DNA_Supragingival plaque
301058
301133
+
Val
TAC
[ENA]
¢þ
>WENV180822109
ODJT01000017
[ODJT] human metagenome; G_DNA_Supragingival plaque
50748
50823
+
Val
TAC
[ENA]
¢þ
>WENV180823036
ODJW01002725
[ODJW] human metagenome; G_DNA_Supragingival plaque
2216
2291
+
Val
TAC
[ENA]
¢þ
>WENV180824174
ODJX01001136
[ODJX] human metagenome; G_DNA_Supragingival plaque
7247
7322
+
Val
TAC
[ENA]
¢þ
>WENV180832359
ODKC01001259
[ODKC] human metagenome; G_DNA_Supragingival plaque
3678
3603
-
Val
TAC
[ENA]
¢þ
>WENV180835011
ODKE01000314
[ODKE] human metagenome; G_DNA_Supragingival plaque
11008
11083
+
Val
TAC
[ENA]
¢þ
>WENV180842786
ODKN01000009
[ODKN] human metagenome; G_DNA_Supragingival plaque
105519
105444
-
Val
TAC
[ENA]
¢þ
>WENV180859051
ODLD01000001
[ODLD] human metagenome; G_DNA_Supragingival plaque
633859
633784
-
Val
TAC
[ENA]
¢þ
>WENV180881325
ODMA01000010
[ODMA] human metagenome; G_DNA_Supragingival plaque
19931
20006
+
Val
TAC
[ENA]
¢þ
>WENV180887925
ODMN01000001
[ODMN] human metagenome; G_DNA_Supragingival plaque
178379
178454
+
Val
TAC
[ENA]
¢þ
>WENV180921211
ODTJ01000002
[ODTJ] human metagenome; G_DNA_Supragingival plaque
66877
66952
+
Val
TAC
[ENA]
¢þ
>WENV180923615
ODTK01000052
[ODTK] human metagenome; G_DNA_Supragingival plaque
92178
92103
-
Val
TAC
[ENA]
¢þ
>WENV180927328
ODTM01000220
[ODTM] human metagenome; G_DNA_Supragingival plaque
20809
20734
-
Val
TAC
[ENA]
¢þ
>WENV180933560
ODTR01000557
[ODTR] human metagenome; G_DNA_Supragingival plaque
6048
6123
+
Val
TAC
[ENA]
¢þ
>WENV180934470
ODTS01000126
[ODTS] human metagenome; G_DNA_Subgingival plaque
21899
21974
+
Val
TAC
[ENA]
¢þ
>WENV180937597
ODTX01000002
[ODTX] human metagenome; G_DNA_Supragingival plaque
158948
159023
+
Val
TAC
[ENA]
¢þ
>WENV180943777
ODUC01002463
[ODUC] human metagenome; G_DNA_Supragingival plaque
1492
1567
+
Val
TAC
[ENA]
¢þ
>WENV180958207
ODUL01001085
[ODUL] human metagenome; G_DNA_Supragingival plaque
9008
9083
+
Val
TAC
[ENA]
¢þ
>WENV180963887
ODUO01000018
[ODUO] human metagenome; G_DNA_Supragingival plaque
26366
26441
+
Val
TAC
[ENA]
¢þ
>WENV180972996
ODUW01000759
[ODUW] human metagenome; G_DNA_Supragingival plaque
5741
5816
+
Val
TAC
[ENA]
¢þ
>WENV180980231
ODVE01000002
[ODVE] human metagenome; G_DNA_Supragingival plaque
25667
25742
+
Val
TAC
[ENA]
¢þ
>WENV180983728
ODVF01031978
[ODVF] human metagenome; G_DNA_Supragingival plaque
1231
1156
-
Val
TAC
[ENA]
¢þ
>WENV180986884
ODVK01001652
[ODVK] human metagenome; G_DNA_Supragingival plaque
2492
2417
-
Val
TAC
[ENA]
¢þ
>WENV180997999
ODVT01000001
[ODVT] human metagenome; G_DNA_Buccal mucosa
186594
186669
+
Val
TAC
[ENA]
¢þ
>WENV181002236
ODVX01000116
[ODVX] human metagenome; G_DNA_Supragingival plaque
44661
44736
+
Val
TAC
[ENA]
¢þ
>WENV181012462
ODWK01000413
[ODWK] human metagenome; G_DNA_Supragingival plaque
146
71
-
Val
TAC
[ENA]
¢þ
>WENV181018979
ODWU01000286
[ODWU] human metagenome; G_DNA_Supragingival plaque
19923
19998
+
Val
TAC
[ENA]
¢þ
>WENV181029289
ODXF01000056
[ODXF] human metagenome; G_DNA_Supragingival plaque
15351
15276
-
Val
TAC
[ENA]
¢þ
>WENV181043328
ODXU01125194
[ODXU] human metagenome; G_DNA_Buccal mucosa
147
72
-
Val
TAC
[ENA]
¢þ
>WENV181049415
ODYD01000152
[ODYD] human metagenome; G_DNA_Supragingival plaque
22028
21953
-
Val
TAC
[ENA]
¢þ
>WENV181062894
ODYP01000001
[ODYP] human metagenome; G_DNA_Supragingival plaque
630489
630414
-
Val
TAC
[ENA]
¢þ
>WENV181066915
ODZI01003419
[ODZI] human metagenome; G_DNA_Supragingival plaque
5609
5684
+
Val
TAC
[ENA]
¢þ
>WENV181079765
OEAS01014008
[OEAS] human metagenome; G_DNA_Supragingival plaque
3293
3368
+
Val
TAC
[ENA]
¢þ
>WENV181090100
OEBC01000001
[OEBC] human metagenome; G_DNA_Supragingival plaque
207197
207272
+
Val
TAC
[ENA]
¢þ
>WENV181106554
OEEI01000001
[OEEI] human metagenome; G_DNA_Supragingival plaque
301043
301118
+
Val
TAC
[ENA]
¢þ
>WENV181120382
OEFJ01065670
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
88
163
+
Val
TAC
[ENA]
¢þ
>WENV181137071
OEGJ01000191
[OEGJ] human metagenome; G_DNA_Supragingival plaque
22419
22344
-
Val
TAC
[ENA]
¢þ
>WENV181142938
OEHM01000011
[OEHM] human metagenome; G_DNA_Supragingival plaque
198506
198431
-
Val
TAC
[ENA]
¢þ
>WENV181145683
OEHQ01000008
[OEHQ] human metagenome; G_DNA_Supragingival plaque
81421
81496
+
Val
TAC
[ENA]
¢þ
>WENV181151950
OEIA01000001
[OEIA] human metagenome; G_DNA_Supragingival plaque
123761
123686
-
Val
TAC
[ENA]
¢þ
>WENV181158813
OEIH01010750
[OEIH] human metagenome; G_DNA_Supragingival plaque
995
1070
+
Val
TAC
[ENA]
¢þ
>WENV181160029
OEIK01001473
[OEIK] human metagenome; G_DNA_Supragingival plaque
5850
5925
+
Val
TAC
[ENA]
¢þ
>WENV181177144
OEJS01000027
[OEJS] human metagenome; G_DNA_Supragingival plaque
26366
26441
+
Val
TAC
[ENA]
¢þ
>WENV181179422
OEJT01004688
[OEJT] human metagenome; G_DNA_Supragingival plaque
919
844
-
Val
TAC
[ENA]
¢þ
>WENV181181544
OEJV01000001
[OEJV] human metagenome; G_DNA_Supragingival plaque
296751
296826
+
Val
TAC
[ENA]
¢þ
>WENV183508661
OMHE01010027
[OMHE] human oral metagenome; human oral
334
259
-
Val
TAC
[ENA]
¢þ
>WENV183508709
OMHF01000426
[OMHF] human oral metagenome; human oral
2300
2375
+
Val
TAC
[ENA]
¢þ
>WENV183509059
OMHG01003650
[OMHG] human oral metagenome; human oral
713
638
-
Val
TAC
[ENA]
¢þ
>WENV183509193
OMHH01000118
[OMHH] human oral metagenome; human oral
5194
5119
-
Val
TAC
[ENA]
¢þ
>WENV183509815
OMHJ01016713
[OMHJ] human oral metagenome; human oral
234
309
+
Val
TAC
[ENA]
¢þ
>WENV183509868
OMHK01001337
[OMHK] human oral metagenome; human oral
644
719
+
Val
TAC
[ENA]
¢þ
>WENV183510244
OMHN01000350
[OMHN] human oral metagenome; human oral
2305
2380
+
Val
TAC
[ENA]
¢þ
>WENV183510578
OMHP01000829
[OMHP] human oral metagenome; human oral
1397
1322
-
Val
TAC
[ENA]
¢þ
>WENV183510651
OMHQ01000473
[OMHQ] human oral metagenome; human oral
628
703
+
Val
TAC
[ENA]
¢þ
>WENV183510828
OMHS01002006
[OMHS] human oral metagenome; human oral
595
670
+
Val
TAC
[ENA]
¢þ
>WENV183511158
OMIA01001315
[OMIA] human oral metagenome; human oral
102
177
+
Val
TAC
[ENA]
¢þ
>W09119760
ACEB01000023
Actinomycetota
Corynebacterium matruchotii ATCC 33806 [ACEB]
98173
98248
+
Val
TAC
[ENA]
¡û
>W09134396
ACSH01000023
Actinomycetota
Corynebacterium matruchotii ATCC 14266 [ACSH]
625049
624974
-
Val
TAC
[ENA]
¡û
>C191114628
CP033897
Actinomycetota
Corynebacterium gerontici W8 [CP033897]
1646876
1646803
-
Val
TAC
-
¡û
>C191114650
CP033898
Actinomycetota
Corynebacterium pseudopelargi 812CH [CP033898]
722098
722171
+
Val
TAC
-
¡û
>C191138555
CP035299
Actinomycetota
Corynebacterium pelargi 136/3 [CP035299]
697270
697343
+
Val
TAC
-
¡û
>C191209522
LR134377
Actinomycetota
Corynebacterium kutscheri NCTC949 [LR134377]
1425669
1425742
+
Val
TAC
-
¡û
>C191209709
LR134381
Actinomycetota
Corynebacterium kutscheri NCTC11138 [LR134381]
217803
217876
+
Val
TAC
-
¡û
>C191210880
LR134407
Actinomycetota
Corynebacterium kutscheri NCTC3655 [LR134407]
88028
88101
+
Val
TAC
-
¡û
>C191213031
LR134504
Actinomycetota
Corynebacterium matruchotii NCTC10206 [LR134504]
2522888
2522813
-
Val
TAC
-
¡û
>W1911498460
OCTS01000006
Actinomycetota
Corynebacterium dentalis Marseille-P4122 [OCTS]
215716
215643
-
Val
TAC
[ENA]
¡û
>C151079761
CP011312
Actinomycetota
Corynebacterium kutscheri DSM 20755 [CP011312]
807715
807788
+
Val
TAC
[Ensembl]
¡û
>C151084409
CP011542
Actinomycetota
Corynebacterium mustelae DSM 45274 [CP011542]
2507266
2507193
-
Val
TAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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