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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46091 (45 seq.)
>W1710989594
LPWA01000148
Alphaproteobacteria
Mesorhizobium loti [LPWA]
6926
7015
+
Ser
CGA
[ENA]
¡û
>W1711257266
LYTM01000045
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
82387
82298
-
Ser
CGA
[ENA]
¡û
>W1711257327
LYTP01000001
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
696351
696440
+
Ser
CGA
[ENA]
¡û
>W1711353163
MDDT01000015
Alphaproteobacteria
Mesorhizobium sp. LCM 4576 [MDDT]
24169
24080
-
Ser
CGA
[ENA]
¡û
>W1711353216
MDDU01000007
Alphaproteobacteria
Mesorhizobium sp. LCM 4577 [MDDU]
8352
8263
-
Ser
CGA
[ENA]
¡û
>W1711354730
MDFL01000014
Alphaproteobacteria
Mesorhizobium sp. ORS 3428 ORS3428 [MDFL]
179256
179345
+
Ser
CGA
[ENA]
¡û
>W1711384689
MEDI01000129
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
4871
4960
+
Ser
CGA
[ENA]
¡û
>W1711385425
MEEE01000416
Alphaproteobacteria
Mesorhizobium sp. SCN 65-12 [MEEE]
18152
18063
-
Ser
CGA
[ENA]
¡û
>W1711505390
MKVL01000032
Alphaproteobacteria
Mesorhizobium sp. 65-26 [MKVL]
316542
316631
+
Ser
CGA
[ENA]
¡û
>W131219405
ATYO01000006
Alphaproteobacteria
Mesorhizobium sp. WSM3224 [ATYO]
297709
297798
+
Ser
CGA
[ENA]
¡û
>WENV180020368
FTCZ01002131
[FTCZ] metagenome; soil
2475
2564
+
Ser
CGA
[ENA]
¢þ
>WENV181308261
OFIS01001688
[OFIS] sludge metagenome; sludge
3288
3199
-
Ser
CGA
[ENA]
¢þ
>WENV181402335
OFTY01000664
[OFTY] sludge metagenome; sludge
784
695
-
Ser
CGA
[ENA]
¢þ
>W141266701
CCMY01000206
Alphaproteobacteria
Mesorhizobium sp. ORS 3324 ORS3324 [CCMY]
16175
16264
+
Ser
CGA
[ENA]
¡û
>W141266731
CCMZ01000034
Alphaproteobacteria
Mesorhizobium plurifarium [CCMZ]
245402
245313
-
Ser
CGA
[ENA]
¡û
>W141266797
CCNA01000061
Alphaproteobacteria
Mesorhizobium sp. SOD10 [CCNA]
88004
87915
-
Ser
CGA
[ENA]
¡û
>W141266843
CCNB01000046
Alphaproteobacteria
Mesorhizobium plurifarium [CCNB]
157471
157382
-
Ser
CGA
[ENA]
¡û
>W141266883
CCNC01000168
Alphaproteobacteria
Mesorhizobium sp. ORS 3359 ORS3359 [CCNC]
29877
29788
-
Ser
CGA
[ENA]
¡û
>W141266910
CCNE01000021
Alphaproteobacteria
Mesorhizobium plurifarium [CCNE]
8982
8893
-
Ser
CGA
[ENA]
¡û
>C191000407
AP017626
Alphaproteobacteria
Pleomorphomonas sp. SM30 [AP017626]
3175663
3175574
-
Ser
CGA
-
¡û
>C191125555
CP034444
Alphaproteobacteria
Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 [CP034444]
4185751
4185662
-
Ser
CGA
-
¡û
>C191125576
CP034445
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 [CP034445]
2458796
2458885
+
Ser
CGA
-
¡û
>C191125639
CP034446
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.05.1.1 [CP034446]
5861020
5860931
-
Ser
CGA
-
¡û
>C191125707
CP034447
Alphaproteobacteria
Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 [CP034447]
2260816
2260727
-
Ser
CGA
-
¡û
>C191125762
CP034448
Alphaproteobacteria
Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 [CP034448]
1623948
1623859
-
Ser
CGA
-
¡û
>C191125807
CP034449
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 [CP034449]
3819791
3819702
-
Ser
CGA
-
¡û
>C191125852
CP034451
Alphaproteobacteria
Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 [CP034451]
4112247
4112158
-
Ser
CGA
-
¡û
>W1911242458
NSFT01000005
Alphaproteobacteria
Mesorhizobium sp. WSM4313 [NSFT]
18855
18766
-
Ser
CGA
[ENA]
¡û
>W1911242686
NSFY01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3882 [NSFY]
397631
397720
+
Ser
CGA
[ENA]
¡û
>W1911242734
NSFZ01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3879 [NSFZ]
576221
576132
-
Ser
CGA
[ENA]
¡û
>W1911242773
NSGA01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3876 [NSGA]
600223
600312
+
Ser
CGA
[ENA]
¡û
>W1911242838
NSGB01000007
Alphaproteobacteria
Mesorhizobium sp. WSM3868 [NSGB]
43998
43909
-
Ser
CGA
[ENA]
¡û
>W1911242877
NSGC01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3866 [NSGC]
377212
377123
-
Ser
CGA
[ENA]
¡û
>W1911242937
NSGD01000004
Alphaproteobacteria
Mesorhizobium sp. WSM3864 [NSGD]
132182
132093
-
Ser
CGA
[ENA]
¡û
>W1911242985
NSGE01000005
Alphaproteobacteria
Mesorhizobium sp. WSM3862 [NSGE]
408905
408994
+
Ser
CGA
[ENA]
¡û
>W1911243022
NSGF01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3860 [NSGF]
326003
325914
-
Ser
CGA
[ENA]
¡û
>W1911243084
NSGG01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3859 [NSGG]
182122
182033
-
Ser
CGA
[ENA]
¡û
>W1911695538
QMBQ01000005
Alphaproteobacteria
Mesorhizobium atlanticum CNPSo 3140 [QMBQ]
26037
26126
+
Ser
CGA
[ENA]
¡û
>W1810699018
QMBP01000015
Alphaproteobacteria
Mesorhizobium hawassense AC99b [QMBP]
94929
94840
-
Ser
CGA
[ENA]
¡û
>W1610083654
CCND01000002
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
147386
147475
+
Ser
CGA
[ENA]
¡û
>W1610844470
LPWA01000148
Alphaproteobacteria
Mesorhizobium loti [LPWA]
6926
7015
+
Ser
CGA
[ENA]
¡û
>W1611020242
LYTM01000045
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
82387
82298
-
Ser
CGA
[ENA]
¡û
>W1611020349
LYTP01000001
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
696351
696440
+
Ser
CGA
[ENA]
¡û
>W1710088671
CCND01000002
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
147386
147475
+
Ser
CGA
[ENA]
¡û
>W1710571239
FOVT01000004
Alphaproteobacteria
Mesorhizobium sp. NFR06 [FOVT]
208678
208589
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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