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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460942 (75 seq.)
>W1711078802
LSNE01000006
Gammaproteobacteria
Paraglaciecola hydrolytica S66 [LSNE]
377256
377331
+
His
GTG
[ENA]
¡û
>C015877
CP000388
Gammaproteobacteria
Paraglaciecola sp. T6c [CP000388]
3782214
3782139
-
His
GTG
[Ensembl]
¡û
>WENV180351820
OBLQ010109844
[OBLQ] soil metagenome; soil
247
322
+
His
GTG
[ENA]
¢þ
>WENV180357750
OBNN01087737
[OBNN] marine metagenome; Coastal water
138
63
-
His
GTG
[ENA]
¢þ
>WENV181416602
OGCL01111658
[OGCL] hot springs metagenome; Hot spring water
677
602
-
His
GTG
[ENA]
¢þ
>W141223719
BAEK01000038
Gammaproteobacteria
Paraglaciecola agarilytica NO2 [BAEK]
238686
238611
-
His
GTG
[ENA]
¡û
>W141223765
BAEM01000033
Gammaproteobacteria
Paraglaciecola chathamensis S18K6 [BAEM]
327232
327307
+
His
GTG
[ENA]
¡û
>W141223912
BAEP01000054
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
102255
102180
-
His
GTG
[ENA]
¡û
>W141242103
CAHY01000044
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
102141
102216
+
His
GTG
[ENA]
¡û
>WENV182540192
OJAE01001801
[OJAE] seawater metagenome; Sea water
307
382
+
His
GTG
[ENA]
¢þ
>WENV182540682
OJAO01004786
[OJAO] seawater metagenome; Sea water
377
452
+
His
GTG
[ENA]
¢þ
>WENV182542379
OJAY01000269
[OJAY] seawater metagenome; Sea water
19502
19427
-
His
GTG
[ENA]
¢þ
>WENV182542572
OJAZ01000008
[OJAZ] seawater metagenome; Sea water
2732
2807
+
His
GTG
[ENA]
¢þ
>WENV182542682
OJAZ01000615
[OJAZ] seawater metagenome; Sea water
2935
3010
+
His
GTG
[ENA]
¢þ
>WENV182543746
OJBC01001657
[OJBC] seawater metagenome; Sea water
2732
2807
+
His
GTG
[ENA]
¢þ
>WENV182544175
OJBE01003539
[OJBE] seawater metagenome; Sea water
843
768
-
His
GTG
[ENA]
¢þ
>WENV182546868
OJBP01010770
[OJBP] seawater metagenome; Sea water
746
821
+
His
GTG
[ENA]
¢þ
>WENV182546914
OJBQ01002347
[OJBQ] seawater metagenome; Sea water
354
429
+
His
GTG
[ENA]
¢þ
>WENV182547149
OJBR01002403
[OJBR] seawater metagenome; Sea water
138
63
-
His
GTG
[ENA]
¢þ
>WENV182548739
OJBX01000054
[OJBX] seawater metagenome; Sea water
2736
2811
+
His
GTG
[ENA]
¢þ
>WENV182549945
OJBZ01000697
[OJBZ] seawater metagenome; Sea water
2847
2772
-
His
GTG
[ENA]
¢þ
>WENV182550102
OJBZ01003187
[OJBZ] seawater metagenome; Sea water
2734
2809
+
His
GTG
[ENA]
¢þ
>WENV182550878
OJCB01001141
[OJCB] seawater metagenome; Sea water
2734
2809
+
His
GTG
[ENA]
¢þ
>WENV182551697
OJCG01002860
[OJCG] seawater metagenome; Sea water
277
352
+
His
GTG
[ENA]
¢þ
>WENV182554954
OJCY01000137
[OJCY] seawater metagenome; Sea water
20292
20367
+
His
GTG
[ENA]
¢þ
>WENV182555756
OJDD01000373
[OJDD] seawater metagenome; Sea water
8880
8805
-
His
GTG
[ENA]
¢þ
>WENV182556727
OJDH01000011
[OJDH] seawater metagenome; Sea water
62531
62606
+
His
GTG
[ENA]
¢þ
>WENV182556948
OJDI01000050
[OJDI] seawater metagenome; Sea water
48959
49034
+
His
GTG
[ENA]
¢þ
>WENV182558617
OJDN01000035
[OJDN] seawater metagenome; Sea water
29755
29680
-
His
GTG
[ENA]
¢þ
>WENV182562197
OJDZ01000053
[OJDZ] seawater metagenome; Sea water
48991
49066
+
His
GTG
[ENA]
¢þ
>WENV182562212
OJDZ01000089
[OJDZ] seawater metagenome; Sea water
9626
9701
+
His
GTG
[ENA]
¢þ
>WENV182568160
OJEQ01003630
[OJEQ] seawater metagenome; Sea water
299
224
-
His
GTG
[ENA]
¢þ
>WENV182568194
OJER01001109
[OJER] seawater metagenome; Sea water
1331
1256
-
His
GTG
[ENA]
¢þ
>WENV182570670
OJFE01001299
[OJFE] seawater metagenome; Sea water
1002
927
-
His
GTG
[ENA]
¢þ
>WENV182570995
OJFG01000019
[OJFG] seawater metagenome; Sea water
48991
49066
+
His
GTG
[ENA]
¢þ
>WENV182572080
OJFL01000263
[OJFL] seawater metagenome; Sea water
16145
16220
+
His
GTG
[ENA]
¢þ
>WENV182574295
OJFR01002623
[OJFR] seawater metagenome; Sea water
2733
2808
+
His
GTG
[ENA]
¢þ
>WENV182574538
OJFS01000010
[OJFS] seawater metagenome; Sea water
81998
81923
-
His
GTG
[ENA]
¢þ
>WENV182574727
OJFS01000817
[OJFS] seawater metagenome; Sea water
692
767
+
His
GTG
[ENA]
¢þ
>WENV182575624
OJFV01000582
[OJFV] seawater metagenome; Sea water
161
86
-
His
GTG
[ENA]
¢þ
>WENV182575978
OJFX01001033
[OJFX] seawater metagenome; Sea water
7315
7240
-
His
GTG
[ENA]
¢þ
>WENV182576863
OJFZ01001527
[OJFZ] seawater metagenome; Sea water
1157
1082
-
His
GTG
[ENA]
¢þ
>WENV182577884
OJGL01002541
[OJGL] seawater metagenome; Sea water
317
392
+
His
GTG
[ENA]
¢þ
>WENV182578420
OJGO01000005
[OJGO] seawater metagenome; Sea water
89554
89629
+
His
GTG
[ENA]
¢þ
>WENV182580801
OJGW01013903
[OJGW] seawater metagenome; Sea water
1191
1266
+
His
GTG
[ENA]
¢þ
>WENV182581054
OJGX01000015
[OJGX] seawater metagenome; Sea water
41793
41718
-
His
GTG
[ENA]
¢þ
>WENV182582753
OJHC01000010
[OJHC] seawater metagenome; Sea water
48992
49067
+
His
GTG
[ENA]
¢þ
>WENV182582779
OJHC01000060
[OJHC] seawater metagenome; Sea water
43214
43139
-
His
GTG
[ENA]
¢þ
>WENV182585760
OJHI01006166
[OJHI] seawater metagenome; Sea water
711
636
-
His
GTG
[ENA]
¢þ
>WENV182588222
OJHP01001887
[OJHP] seawater metagenome; Sea water
235
160
-
His
GTG
[ENA]
¢þ
>WENV182588258
OJHQ01000440
[OJHQ] seawater metagenome; Sea water
354
429
+
His
GTG
[ENA]
¢þ
>WENV182588716
OJHW01008744
[OJHW] seawater metagenome; Sea water
290
215
-
His
GTG
[ENA]
¢þ
>WENV182591396
OJIO01000018
[OJIO] seawater metagenome; Sea water
2734
2809
+
His
GTG
[ENA]
¢þ
>WENV182592391
OJIR01000217
[OJIR] seawater metagenome; Sea water
5154
5079
-
His
GTG
[ENA]
¢þ
>WENV182592455
OJIR01000851
[OJIR] seawater metagenome; Sea water
4825
4900
+
His
GTG
[ENA]
¢þ
>WENV183055256
OLGX01000407
[OLGX] seawater metagenome; Sea water
12672
12597
-
His
GTG
[ENA]
¢þ
>WENV183055408
OLHB01004503
[OLHB] seawater metagenome; Sea water
277
202
-
His
GTG
[ENA]
¢þ
>WENV183057329
OLHL01000385
[OLHL] seawater metagenome; Sea water
19450
19375
-
His
GTG
[ENA]
¢þ
>WENV183062238
OLID01000889
[OLID] seawater metagenome; Sea water
2734
2809
+
His
GTG
[ENA]
¢þ
>WENV183522241
OMOM01001116
[OMOM] seawater metagenome; Sea water
182
257
+
His
GTG
[ENA]
¢þ
>WENV170023906
BCQL01009334
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1886
1811
-
His
GTG
[ENA]
¢þ
>C191217668
LR136958
Gammaproteobacteria
Alteromonas sp. 76-1 [LR136958]
3168362
3168287
-
His
GTG
-
¡û
>W09103803
AAKP01000067
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
310
235
-
His
GTG
[ENA]
¡û
>W1910729260
MGYI01000052
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_45_9 [MGYI]
18773
18698
-
His
GTG
[ENA]
¡û
>W1911641223
PYHU01000023
Gammaproteobacteria
Alteromonas sp. KS69 [PYHU]
33986
34061
+
His
GTG
[ENA]
¡û
>C11100830
CP002339
Gammaproteobacteria
Alteromonas naphthalenivorans SN2 [CP002339]
946570
946645
+
His
GTG
[Ensembl]
¡û
>C11109449
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
1394546
1394621
+
His
GTG
[Ensembl]
¡û
>W1511348337
JRKG01000016
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
583884
583959
+
His
GTG
[ENA]
¡û
>C161051391
CP013120
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CP013120]
973680
973755
+
His
GTG
[Ensembl]
¡û
>C161062068
CP013926
Gammaproteobacteria
Alteromonas stellipolaris LMG 21861 [CP013926]
3116044
3115969
-
His
GTG
-
¡û
>C161062245
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
3132981
3132906
-
His
GTG
-
¡û
>C161071061
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
3159896
3159821
-
His
GTG
-
¡û
>C161086241
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
2723983
2724058
+
His
GTG
-
¡û
>C161086345
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
758694
758619
-
His
GTG
-
¡û
>W1610917712
LSNE01000006
Gammaproteobacteria
Paraglaciecola hydrolytica S66 [LSNE]
377256
377331
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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