This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460957 (69 seq.)
>W1711305188
MAKX01000001
Bacteroidota
Tenacibaculum soleae [MAKX]
712013
711941
-
Gly
GCC
[ENA]
¡û
>C171059678
CP017259
Bacteroidota
Formosa sp. Hel3_A1_48 [CP017259]
1058001
1057929
-
Gly
GCC
-
¡û
>C171063232
CP017477
Bacteroidota
Polaribacter vadi LPB0003 [CP017477]
2198593
2198667
+
Gly
GCC
-
¡û
>W131110926
APLF01000009
Bacteroidota
Psychroflexus gondwanensis ACAM 44 [APLF]
130921
130993
+
Gly
GCC
[ENA]
¡û
>WENV180100791
OAOS01040186
[OAOS] marine metagenome; ENVO.00002110
110
182
+
Gly
GCC
[ENA]
¢þ
>WENV180102831
OAOZ01025578
[OAOZ] marine metagenome; ENVO:00002010
115
187
+
Gly
GCC
[ENA]
¢þ
>WENV180362717
OBNX01025006
[OBNX] marine metagenome; ENVO:00002010
187
259
+
Gly
GCC
[ENA]
¢þ
>WENV180366777
OBOD01132132
[OBOD] marine metagenome; ENVO:00002010
294
366
+
Gly
GCC
[ENA]
¢þ
>WENV180382621
OBOT01029309
[OBOT] marine metagenome; 0
415
487
+
Gly
GCC
[ENA]
¢þ
>WENV180392579
OBPO01139005
[OBPO] marine metagenome; seawater
243
171
-
Gly
GCC
[ENA]
¢þ
>WENV180397917
OBPZ01025028
[OBPZ] marine metagenome; ENVO:00002010
28
100
+
Gly
GCC
[ENA]
¢þ
>WENV181313757
OFJH01004277
[OFJH] marine metagenome; seawater
407
335
-
Gly
GCC
[ENA]
¢þ
>WENV181323983
OFLA01000666
[OFLA] marine metagenome; seawater
302
374
+
Gly
GCC
[ENA]
¢þ
>WENV181325710
OFLJ01017119
[OFLJ] seawater metagenome; seawater
90
18
-
Gly
GCC
[ENA]
¢þ
>WENV181391636
OFRT01031710
[OFRT] seawater metagenome; seawater
298
370
+
Gly
GCC
[ENA]
¢þ
>WENV182548856
OJBX01000639
[OJBX] seawater metagenome; Sea water
3880
3952
+
Gly
GCC
[ENA]
¢þ
>WENV182550444
OJCA01002860
[OJCA] seawater metagenome; Sea water
933
861
-
Gly
GCC
[ENA]
¢þ
>WENV182555111
OJCY01002597
[OJCY] seawater metagenome; Sea water
2192
2264
+
Gly
GCC
[ENA]
¢þ
>WENV182558002
OJDL01001607
[OJDL] seawater metagenome; Sea water
2657
2729
+
Gly
GCC
[ENA]
¢þ
>WENV182558136
OJDL01006531
[OJDL] seawater metagenome; Sea water
888
960
+
Gly
GCC
[ENA]
¢þ
>WENV182560328
OJDU01000010
[OJDU] seawater metagenome; Sea water
50328
50256
-
Gly
GCC
[ENA]
¢þ
>WENV182567832
OJEP01000526
[OJEP] seawater metagenome; Sea water
6869
6941
+
Gly
GCC
[ENA]
¢þ
>WENV182567899
OJEP01001989
[OJEP] seawater metagenome; Sea water
2691
2763
+
Gly
GCC
[ENA]
¢þ
>WENV182576444
OJFX01025290
[OJFX] seawater metagenome; Sea water
78
6
-
Gly
GCC
[ENA]
¢þ
>WENV182578660
OJGP01000025
[OJGP] seawater metagenome; Sea water
14666
14594
-
Gly
GCC
[ENA]
¢þ
>WENV182586525
OJHK01000924
[OJHK] seawater metagenome; Sea water
11869
11797
-
Gly
GCC
[ENA]
¢þ
>WENV182586872
OJHK01008517
[OJHK] seawater metagenome; Sea water
1069
997
-
Gly
GCC
[ENA]
¢þ
>WENV182590513
OJII01010273
[OJII] seawater metagenome; Sea water
409
481
+
Gly
GCC
[ENA]
¢þ
>WENV182591610
OJIO01000767
[OJIO] seawater metagenome; Sea water
7390
7318
-
Gly
GCC
[ENA]
¢þ
>WENV183062226
OLID01000763
[OLID] seawater metagenome; Sea water
3881
3953
+
Gly
GCC
[ENA]
¢þ
>WENV183062240
OLID01000902
[OLID] seawater metagenome; Sea water
4789
4861
+
Gly
GCC
[ENA]
¢þ
>WENV183064739
OLII01000253
[OLII] seawater metagenome; Sea water
2435
2363
-
Gly
GCC
[ENA]
¢þ
>WENV183064813
OLII01000963
[OLII] seawater metagenome; Sea water
9708
9636
-
Gly
GCC
[ENA]
¢þ
>WENV183623438
OOGA01001153
[OOGA] marine metagenome; sea ice
652
580
-
Gly
GCC
[ENA]
¢þ
>WENV183628076
OOGM01010812
[OOGM] marine metagenome; sea ice
86
14
-
Gly
GCC
[ENA]
¢þ
>WENV183629443
OOGP01042526
[OOGP] marine metagenome; seawater
570
498
-
Gly
GCC
[ENA]
¢þ
>WENV183630445
OOGS01016395
[OOGS] marine metagenome; seawater
524
596
+
Gly
GCC
[ENA]
¢þ
>WENV170134921
CENU01157827
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
263
189
-
Gly
GCC
[ENA]
¢þ
>WENV170326707
CESU01015528
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
534
460
-
Gly
GCC
[ENA]
¢þ
>WENV170330538
CESV01333038
[CESV] marine metagenome genome assembly TARA_100_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
135
61
-
Gly
GCC
[ENA]
¢þ
>WENV170568721
FLMP01070465
[FLMP] seawater metagenome; seawater
723
795
+
Gly
GCC
[ENA]
¢þ
>WENV170699448
LGVF01555670
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
860
788
-
Gly
GCC
[ENA]
¢þ
>WENV170782109
MAAC01008537
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
4960
4886
-
Gly
GCC
[ENA]
¢þ
>WENV170782141
MAAC01009420
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
17031
17105
+
Gly
GCC
[ENA]
¢þ
>WENV170782702
MAAC01011174
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
38409
38483
+
Gly
GCC
[ENA]
¢þ
>WENV170783424
MAAC01016771
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2867
2941
+
Gly
GCC
[ENA]
¢þ
>WENV170783449
MAAC01016904
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
5491
5565
+
Gly
GCC
[ENA]
¢þ
>WENV170783511
MAAC01017486
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
43236
43162
-
Gly
GCC
[ENA]
¢þ
>WENV170783849
MAAC01019219
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
32127
32201
+
Gly
GCC
[ENA]
¢þ
>C181113346
CP025117
Bacteroidota
Olleya sp. Bg11-27 [CP025117]
89651
89579
-
Gly
GCC
-
¡û
>C191166152
CP039451
Bacteroidota
Psychroserpens sp. NJDZ02 [CP039451]
2193975
2194047
+
Gly
GCC
-
¡û
>W141563389
JHZZ01000001
Bacteroidota
Polaribacter sp. Hel_I_88 [JHZZ]
1645225
1645299
+
Gly
GCC
[ENA]
¡û
>W141807480
JPOL01000002
Bacteroidota
Flavimarina sp. Hel_I_48 MAR_2009_132 [JPOL]
1674103
1674031
-
Gly
GCC
[ENA]
¡û
>W1910891592
NEXQ01000018
Bacteroidota
Psychroflexus sp. S27 [NEXQ]
35678
35750
+
Gly
GCC
[ENA]
¡û
>W1911501353
OENC01000056
Bacteroidota
Tenacibaculum dicentrarchi type strain: TD3509 [OENC]
579841
579913
+
Gly
GCC
[ENA]
¡û
>W1911501460
OENF01000042
Bacteroidota
Tenacibaculum piscium TNO020 [OENF]
27779
27851
+
Gly
GCC
[ENA]
¡û
>W1810173120
PJMV01000001
Bacteroidota
Polaribacter sp. Hel1_33_96 [PJMV]
3072056
3072128
+
Gly
GCC
[ENA]
¡û
>W1810588105
QFRI01000001
Bacteroidota
Algibacter marinivivus ZY111 [QFRI]
1523385
1523457
+
Gly
GCC
[ENA]
¡û
>W1511296854
JPDI01000001
Bacteroidota
Polaribacter sp. Hel1_33_49 [JPDI]
1198194
1198268
+
Gly
GCC
[ENA]
¡û
>W1511576848
LAQB01000020
Bacteroidota
Polaribacter sp. ASP10-06a [LAQB]
28573
28647
+
Gly
GCC
[ENA]
¡û
>W11169952
AFPB01000152
Bacteroidota
Aquimarina agarivorans HQM9 [AFPB]
98928
99000
+
Gly
GCC
[ENA]
¡û
>C161055947
CP013355
Bacteroidota
Lutibacter profundi LP1 [CP013355]
1589806
1589880
+
Gly
GCC
[Ensembl]
¡û
>W121031930
AHHE02000029
Bacteroidota
Aquimarina agarilytica ZC1 [AHHE]
3006
3078
+
Gly
GCC
[ENA]
¡û
>W1611054730
MAKX01000001
Bacteroidota
Tenacibaculum soleae [MAKX]
712013
711941
-
Gly
GCC
[ENA]
¡û
>WENV078307
AAFZ01023780
Fossil microbial community from Whale Fall (Santa Cruz Basin)
540
614
+
Gly
GCC
[ENA]
>WENV078425
AAGA01011607
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
148
74
-
Gly
GCC
[ENA]
>WENV078478
AAGA01021200
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
766
692
-
Gly
GCC
[ENA]
>W1710532304
FNQF01000004
Bacteroidota
Psychroflexus halocasei [FNQF]
174733
174805
+
Gly
GCC
[ENA]
¡û
>W1710582204
FPKV01000001
Bacteroidota
Flaviramulus basaltis [FPKV]
1283634
1283706
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK