This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.461062 (49 seq.)
>W131099670
AOTL01000013
Gammaproteobacteria
Methylotuvimicrobium buryatense 5G [AOTL]
528020
527945
-
Trp
CCA
[ENA]
¡û
>W131186077
ARVU01000001
Gammaproteobacteria
Cycloclasticus pugetii PS-1 [ARVU]
1841014
1840939
-
Trp
CCA
[ENA]
¡û
>W131191123
ASHL01000014
Gammaproteobacteria
Cycloclasticus pugetii PY97M [ASHL]
61
136
+
Trp
CCA
[ENA]
¡û
>WENV182543883
OJBD01000415
[OJBD] seawater metagenome; Sea water
917
842
-
Trp
CCA
[ENA]
¢þ
>WENV182546081
OJBO01000787
[OJBO] seawater metagenome; Sea water
91
166
+
Trp
CCA
[ENA]
¢þ
>WENV182552734
OJCO01001518
[OJCO] seawater metagenome; Sea water
1078
1003
-
Trp
CCA
[ENA]
¢þ
>WENV182555421
OJDA01000321
[OJDA] seawater metagenome; Sea water
5987
5912
-
Trp
CCA
[ENA]
¢þ
>WENV182555779
OJDD01000661
[OJDD] seawater metagenome; Sea water
85
160
+
Trp
CCA
[ENA]
¢þ
>WENV182560349
OJDU01000037
[OJDU] seawater metagenome; Sea water
35288
35213
-
Trp
CCA
[ENA]
¢þ
>WENV182561517
OJDW01000952
[OJDW] seawater metagenome; Sea water
2274
2199
-
Trp
CCA
[ENA]
¢þ
>WENV182566882
OJEN01000001
[OJEN] seawater metagenome; Sea water
91
166
+
Trp
CCA
[ENA]
¢þ
>WENV182568520
OJEV01000281
[OJEV] seawater metagenome; Sea water
3640
3565
-
Trp
CCA
[ENA]
¢þ
>WENV182571425
OJFJ01000226
[OJFJ] seawater metagenome; Sea water
1594
1669
+
Trp
CCA
[ENA]
¢þ
>WENV182572001
OJFL01000048
[OJFL] seawater metagenome; Sea water
60324
60249
-
Trp
CCA
[ENA]
¢þ
>WENV182576328
OJFX01011054
[OJFX] seawater metagenome; Sea water
669
594
-
Trp
CCA
[ENA]
¢þ
>WENV182577298
OJGD01000288
[OJGD] seawater metagenome; Sea water
15189
15114
-
Trp
CCA
[ENA]
¢þ
>WENV182577480
OJGF01003587
[OJGF] seawater metagenome; Sea water
1005
930
-
Trp
CCA
[ENA]
¢þ
>WENV182577795
OJGI01001068
[OJGI] seawater metagenome; Sea water
1851
1926
+
Trp
CCA
[ENA]
¢þ
>WENV182579740
OJGT01000126
[OJGT] seawater metagenome; Sea water
85
160
+
Trp
CCA
[ENA]
¢þ
>WENV182579971
OJGU01000765
[OJGU] seawater metagenome; Sea water
8091
8166
+
Trp
CCA
[ENA]
¢þ
>WENV182580288
OJGV01000008
[OJGV] seawater metagenome; Sea water
11980
11905
-
Trp
CCA
[ENA]
¢þ
>WENV182581725
OJGY01000447
[OJGY] seawater metagenome; Sea water
1587
1662
+
Trp
CCA
[ENA]
¢þ
>WENV182581977
OJGZ01001307
[OJGZ] seawater metagenome; Sea water
91
166
+
Trp
CCA
[ENA]
¢þ
>WENV182585613
OJHI01000066
[OJHI] seawater metagenome; Sea water
85
160
+
Trp
CCA
[ENA]
¢þ
>WENV182585958
OJHJ01000119
[OJHJ] seawater metagenome; Sea water
61696
61621
-
Trp
CCA
[ENA]
¢þ
>WENV182587293
OJHM01000180
[OJHM] seawater metagenome; Sea water
85
160
+
Trp
CCA
[ENA]
¢þ
>WENV182587988
OJHO01000557
[OJHO] seawater metagenome; Sea water
15187
15112
-
Trp
CCA
[ENA]
¢þ
>WENV182590551
OJIJ01000001
[OJIJ] seawater metagenome; Sea water
135093
135168
+
Trp
CCA
[ENA]
¢þ
>WENV183054200
OLGS01000663
[OLGS] seawater metagenome; Sea water
1223
1298
+
Trp
CCA
[ENA]
¢þ
>WENV183055708
OLHF01000156
[OLHF] seawater metagenome; Sea water
85
160
+
Trp
CCA
[ENA]
¢þ
>WENV183056287
OLHI01004633
[OLHI] seawater metagenome; Sea water
148
73
-
Trp
CCA
[ENA]
¢þ
>WENV183057013
OLHK01000495
[OLHK] seawater metagenome; Sea water
10662
10587
-
Trp
CCA
[ENA]
¢þ
>WENV170015671
AZII01002370
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
73
148
+
Trp
CCA
[ENA]
¢þ
>WENV170331490
CESW01064703
[CESW] marine metagenome genome assembly TARA_096_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
124
199
+
Trp
CCA
[ENA]
¢þ
>WENV170479821
CEVL01041313
[CEVL] marine metagenome genome assembly TARA_146_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
108
183
+
Trp
CCA
[ENA]
¢þ
>WENV170766564
LWDU01042046
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
107
182
+
Trp
CCA
[ENA]
¢þ
>WENV170780912
MAAB01028231
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
2070
1995
-
Trp
CCA
[ENA]
¢þ
>WENV170782260
MAAC01009589
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
155
230
+
Trp
CCA
[ENA]
¢þ
>WENV170783358
MAAC01016265
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
10659
10584
-
Trp
CCA
[ENA]
¢þ
>WENV170806118
MDSW01077021
[MDSW] marine metagenome; seawater
158
233
+
Trp
CCA
[ENA]
¢þ
>WENV170943220
MDTG01392829
[MDTG] marine metagenome; seawater
622
697
+
Trp
CCA
[ENA]
¢þ
>C181088371
CP023664
Gammaproteobacteria
Cycloclasticus sp. PY97N [CP023664]
845334
845409
+
Trp
CCA
-
¡û
>C191027213
CP024202
Gammaproteobacteria
Methylomicrobium sp. wino1 [CP024202]
133781
133706
-
Trp
CCA
-
¡û
>C191143420
CP035467
Gammaproteobacteria
Methylotuvimicrobium buryatense 5GB1C [CP035467]
811995
812070
+
Trp
CCA
-
¡û
>C141004288
CP005996
Gammaproteobacteria
Cycloclasticus zancles 78-ME [CP005996]
725319
725394
+
Trp
CCA
[Ensembl]
¡û
>W1810484169
QASN01000023
Gammaproteobacteria
Pseudomonas mangrovi TC-11 [QASN]
1220
1295
+
Trp
CCA
[ENA]
¡û
>C151098010
FO082060
Gammaproteobacteria
Methylotuvimicrobium alcaliphilum 20Z [FO082060]
3880084
3880009
-
Trp
CCA
[Ensembl]
¡û
>C131002370
CP003230
Gammaproteobacteria
Cycloclasticus sp. P1 P1; MCCC 1A01040 [CP003230]
1817410
1817335
-
Trp
CCA
[Ensembl]
¡û
>W1710588446
FQZJ01000001
Gammaproteobacteria
Cycloclasticus pugetii DSM 27168 [FQZJ]
396193
396118
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK