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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.461088 (105 seq.)
>W131162928
AQZI01000001
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
430303
430230
-
Gly
GCC
[ENA]
¡û
>W131162986
AQZK01000003
Actinomycetota
actinobacterium SCGC AAA027-J17 [AQZK]
5642
5715
+
Gly
GCC
[ENA]
¡û
>W131237919
AUSE01000061
Actinomycetota
actinobacterium SCGC AAA028-I14 [AUSE]
14640
14713
+
Gly
GCC
[ENA]
¡û
>WENV016693
AACY020468417
Marine microbial communities from Global Ocean Sampling (GOS)
1106
1181
+
Gly
GCC
[ENA]
>WENV180110534
OAPN01000399
[OAPN] marine metagenome; 2011
1382
1455
+
Gly
GCC
[ENA]
¢þ
>WENV180110737
OAPN01005364
[OAPN] marine metagenome; 2011
736
663
-
Gly
GCC
[ENA]
¢þ
>WENV180113772
OAPR01021685
[OAPR] marine metagenome; seawater
127
200
+
Gly
GCC
[ENA]
¢þ
>WENV180357418
OBNN01008358
[OBNN] marine metagenome; Coastal water
484
557
+
Gly
GCC
[ENA]
¢þ
>WENV180377233
OBON01004282
[OBON] marine metagenome; sea water
168
95
-
Gly
GCC
[ENA]
¢þ
>WENV181367184
OFPW01001163
[OFPW] freshwater metagenome; Freshwater Lake
220
293
+
Gly
GCC
[ENA]
¢þ
>WENV181367342
OFQB01000001
[OFQB] freshwater metagenome; Freshwater Lake
10100
10027
-
Gly
GCC
[ENA]
¢þ
>WENV181367590
OFQC01000016
[OFQC] freshwater metagenome; Freshwater Lake
5746
5819
+
Gly
GCC
[ENA]
¢þ
>WENV181368100
OFQK01000011
[OFQK] freshwater metagenome; Freshwater Lake
10123
10050
-
Gly
GCC
[ENA]
¢þ
>WENV181368262
OFQL01000036
[OFQL] freshwater metagenome; Freshwater Lake
14420
14347
-
Gly
GCC
[ENA]
¢þ
>WENV181368408
OFQL01003425
[OFQL] freshwater metagenome; Freshwater Lake
3
76
+
Gly
GCC
[ENA]
¢þ
>WENV181368460
OFQL01006555
[OFQL] freshwater metagenome; Freshwater Lake
938
865
-
Gly
GCC
[ENA]
¢þ
>WENV181368612
OFQM01002501
[OFQM] freshwater metagenome; Freshwater Lake
286
359
+
Gly
GCC
[ENA]
¢þ
>WENV181368663
OFQN01000006
[OFQN] freshwater metagenome; Freshwater Lake
48850
48923
+
Gly
GCC
[ENA]
¢þ
>WENV181368691
OFQN01000042
[OFQN] freshwater metagenome; Freshwater Lake
19159
19086
-
Gly
GCC
[ENA]
¢þ
>WENV181368953
OFQN01005645
[OFQN] freshwater metagenome; Freshwater Lake
3
76
+
Gly
GCC
[ENA]
¢þ
>WENV181369003
OFQN01008296
[OFQN] freshwater metagenome; Freshwater Lake
75
2
-
Gly
GCC
[ENA]
¢þ
>WENV181369112
OFQO01000398
[OFQO] freshwater metagenome; Freshwater Lake
304
377
+
Gly
GCC
[ENA]
¢þ
>WENV181369232
OFQP01000003
[OFQP] freshwater metagenome; Freshwater Lake
62021
62094
+
Gly
GCC
[ENA]
¢þ
>WENV181369242
OFQP01000015
[OFQP] freshwater metagenome; Freshwater Lake
38031
37958
-
Gly
GCC
[ENA]
¢þ
>WENV181369775
OFQR01000046
[OFQR] freshwater metagenome; Freshwater Lake
15592
15665
+
Gly
GCC
[ENA]
¢þ
>WENV181369882
OFQR01001522
[OFQR] freshwater metagenome; Freshwater Lake
774
847
+
Gly
GCC
[ENA]
¢þ
>WENV181370132
OFQS01000042
[OFQS] freshwater metagenome; Freshwater Lake
15642
15715
+
Gly
GCC
[ENA]
¢þ
>WENV181370217
OFQS01000721
[OFQS] freshwater metagenome; Freshwater Lake
75
2
-
Gly
GCC
[ENA]
¢þ
>WENV181370499
OFQT01000001
[OFQT] freshwater metagenome; Freshwater Lake
31390
31317
-
Gly
GCC
[ENA]
¢þ
>WENV181376777
OFRA01000128
[OFRA] wastewater metagenome; Lake Maggiore Verbania
4683
4610
-
Gly
GCC
[ENA]
¢þ
>WENV181376984
OFRA01001093
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1472
1399
-
Gly
GCC
[ENA]
¢þ
>WENV181378042
OFRA01064785
[OFRA] wastewater metagenome; Lake Maggiore Verbania
86
11
-
Gly
GCC
[ENA]
¢þ
>WENV181379523
OFRD01002726
[OFRD] wastewater metagenome; Exp Tend CN 100WW
2699
2772
+
Gly
GCC
[ENA]
¢þ
>WENV181384518
OFRI01002111
[OFRI] wastewater metagenome; Exp Tend VB 90WW
1015
942
-
Gly
GCC
[ENA]
¢þ
>WENV181386136
OFRL01000836
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
901
974
+
Gly
GCC
[ENA]
¢þ
>WENV181386169
OFRL01001024
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
2683
2610
-
Gly
GCC
[ENA]
¢þ
>WENV181391833
OFRU01003141
[OFRU] freshwater metagenome; Freshwater Lake
195
268
+
Gly
GCC
[ENA]
¢þ
>WENV181395634
OFSB01000084
[OFSB] freshwater metagenome; Freshwater Lake
1345
1272
-
Gly
GCC
[ENA]
¢þ
>WENV181395799
OFSB01004893
[OFSB] freshwater metagenome; Freshwater Lake
75
2
-
Gly
GCC
[ENA]
¢þ
>WENV181399808
OFSE01078036
[OFSE] wastewater metagenome; Exp Tend VB 50WW
108
33
-
Gly
GCC
[ENA]
¢þ
>WENV181399920
OFSF01000261
[OFSF] wastewater metagenome; Exp Tend VB 100WW
16652
16725
+
Gly
GCC
[ENA]
¢þ
>WENV181400039
OFSF01000992
[OFSF] wastewater metagenome; Exp Tend VB 100WW
73
1
-
Gly
GCC
[ENA]
¢þ
>WENV181400212
OFSF01002570
[OFSF] wastewater metagenome; Exp Tend VB 100WW
76
3
-
Gly
GCC
[ENA]
¢þ
>WENV181400635
OFSF01014814
[OFSF] wastewater metagenome; Exp Tend VB 100WW
73
1
-
Gly
GCC
[ENA]
¢þ
>W141170897
AXZA01000027
Actinomycetota
actinobacterium SCGC AAA044-D11 [AXZA]
42359
42286
-
Gly
GCC
[ENA]
¡û
>WENV181845199
OGVX01000511
[OGVX] freshwater metagenome; freshwater
4101
4174
+
Gly
GCC
[ENA]
¢þ
>WENV181845435
OGVX01002501
[OGVX] freshwater metagenome; freshwater
1818
1893
+
Gly
GCC
[ENA]
¢þ
>WENV181847235
OGVY01008970
[OGVY] freshwater metagenome; freshwater
942
867
-
Gly
GCC
[ENA]
¢þ
>WENV181848070
OGVZ01001821
[OGVZ] freshwater metagenome; freshwater
1234
1159
-
Gly
GCC
[ENA]
¢þ
>WENV181853353
OGWI01002609
[OGWI] freshwater metagenome; freshwater
1972
2047
+
Gly
GCC
[ENA]
¢þ
>WENV181855787
OGWM01001701
[OGWM] freshwater metagenome; freshwater
1559
1634
+
Gly
GCC
[ENA]
¢þ
>WENV181856008
OGWM01010764
[OGWM] freshwater metagenome; freshwater
778
705
-
Gly
GCC
[ENA]
¢þ
>WENV001821
AACY020051829
Marine microbial communities from Global Ocean Sampling (GOS)
1647
1722
+
Gly
GCC
[ENA]
>WENV170570446
FLOH01000004
[FLOH] marine metagenome; water
3782
3709
-
Gly
GCC
[ENA]
¢þ
>WENV170572006
FLOH01000443
[FLOH] marine metagenome; water
78464
78391
-
Gly
GCC
[ENA]
¢þ
>WENV170618278
FUWD012960588
[FUWD] metagenome; unknown
84
157
+
Gly
GCC
[ENA]
¢þ
>WENV170619748
FUWD013020442
[FUWD] metagenome; unknown
593
520
-
Gly
GCC
[ENA]
¢þ
>WENV170620971
FUWD013044758
[FUWD] metagenome; unknown
105
32
-
Gly
GCC
[ENA]
¢þ
>WENV170621583
FUWD013063874
[FUWD] metagenome; unknown
1029
1104
+
Gly
GCC
[ENA]
¢þ
>WENV170625990
FUWD013211016
[FUWD] metagenome; unknown
2754
2827
+
Gly
GCC
[ENA]
¢þ
>WENV170627869
FUWD013238743
[FUWD] metagenome; unknown
593
520
-
Gly
GCC
[ENA]
¢þ
>WENV170629128
FUWD013261673
[FUWD] metagenome; unknown
105
32
-
Gly
GCC
[ENA]
¢þ
>WENV170629765
FUWD013279883
[FUWD] metagenome; unknown
1029
1104
+
Gly
GCC
[ENA]
¢þ
>WENV170634216
FUWD013412410
[FUWD] metagenome; unknown
2754
2827
+
Gly
GCC
[ENA]
¢þ
>WENV170645513
JNSK01000041
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
25442
25369
-
Gly
GCC
[ENA]
¢þ
>WENV170955968
MJUL01007368
[MJUL] soil metagenome; viral particles from soil sample MS4
116
191
+
Gly
GCC
[ENA]
¢þ
>C181018732
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
1136821
1136894
+
Gly
GCC
-
¡û
>C181020811
CP016768
Actinomycetota
Candidatus Nanopelagicus limnes [CP016768]
705545
705618
+
Gly
GCC
-
¡û
>C181021119
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
614194
614121
-
Gly
GCC
-
¡û
>C181021234
CP016779
Actinomycetota
Candidatus Nanopelagicus abundans [CP016779]
498893
498820
-
Gly
GCC
-
¡û
>C181021340
CP016782
Actinomycetota
Candidatus Planktophila limnetica [CP016782]
575294
575221
-
Gly
GCC
-
¡û
>WENV002116
AACY020058865
Marine microbial communities from Global Ocean Sampling (GOS)
1137
1062
-
Gly
GCC
[ENA]
>W141750906
JNSI01000022
Actinomycetota
actinobacterium acIB-AMD-7 [JNSI]
6047
5972
-
Gly
GCC
[ENA]
¡û
>WENV025827
AACY020917798
Marine microbial communities from Global Ocean Sampling (GOS)
664
739
+
Gly
GCC
[ENA]
>WENV057261
AACY023289577
Marine microbial communities from Global Ocean Sampling (GOS)
440
515
+
Gly
GCC
[ENA]
>WENV057455
AACY023295275
Marine microbial communities from Global Ocean Sampling (GOS)
164
89
-
Gly
GCC
[ENA]
>WENV057564
AACY023299068
Marine microbial communities from Global Ocean Sampling (GOS)
288
363
+
Gly
GCC
[ENA]
>WENV057621
AACY023300427
Marine microbial communities from Global Ocean Sampling (GOS)
186
111
-
Gly
GCC
[ENA]
>WENV057635
AACY023300928
Marine microbial communities from Global Ocean Sampling (GOS)
1088
1163
+
Gly
GCC
[ENA]
>WENV057939
AACY023312036
Marine microbial communities from Global Ocean Sampling (GOS)
1217
1142
-
Gly
GCC
[ENA]
>W121069994
AJWB01000002
Actinomycetota
actinobacterium SCGC AAA027-L06 [AJWB]
46796
46723
-
Gly
GCC
[ENA]
¡û
>WENV058222
AACY023321745
Marine microbial communities from Global Ocean Sampling (GOS)
1011
1086
+
Gly
GCC
[ENA]
>WENV058522
AACY023332019
Marine microbial communities from Global Ocean Sampling (GOS)
607
532
-
Gly
GCC
[ENA]
>WENV058780
AACY023341232
Marine microbial communities from Global Ocean Sampling (GOS)
363
288
-
Gly
GCC
[ENA]
>WENV058885
AACY023345948
Marine microbial communities from Global Ocean Sampling (GOS)
1295
1220
-
Gly
GCC
[ENA]
>WENV058969
AACY023349189
Marine microbial communities from Global Ocean Sampling (GOS)
1022
947
-
Gly
GCC
[ENA]
>WENV061274
AACY023428452
Marine microbial communities from Global Ocean Sampling (GOS)
749
674
-
Gly
GCC
[ENA]
>WENV061492
AACY023433497
Marine microbial communities from Global Ocean Sampling (GOS)
1752
1677
-
Gly
GCC
[ENA]
>WENV006314
AACY020171534
Marine microbial communities from Global Ocean Sampling (GOS)
829
754
-
Gly
GCC
[ENA]
>WENV006600
AACY020176535
Marine microbial communities from Global Ocean Sampling (GOS)
679
604
-
Gly
GCC
[ENA]
>WENV007022
AACY020183220
Marine microbial communities from Global Ocean Sampling (GOS)
110
35
-
Gly
GCC
[ENA]
>W1610597554
LFFA01000003
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
7044
6971
-
Gly
GCC
[ENA]
¡û
>W1610625775
LIBC01000254
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120813-bin39 [LIBC]
287
362
+
Gly
GCC
[ENA]
¡û
>W1610625778
LIBD01000002
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120820-bin23 [LIBD]
191
116
-
Gly
GCC
[ENA]
¡û
>W1610625826
LIBF01000003
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121001-bin59 [LIBF]
663
588
-
Gly
GCC
[ENA]
¡û
>W1610625861
LIBG01000121
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121022-bin9 [LIBG]
1
76
+
Gly
GCC
[ENA]
¡û
>W1610626267
LIBZ01000002
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120920-bin74 [LIBZ]
32035
32110
+
Gly
GCC
[ENA]
¡û
>W1610626702
LICQ01000006
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120507-bin0 [LICQ]
2656
2581
-
Gly
GCC
[ENA]
¡û
>W1710718801
LFFA01000003
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
7044
6971
-
Gly
GCC
[ENA]
¡û
>W1710756902
LIBC01000254
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120813-bin39 [LIBC]
287
362
+
Gly
GCC
[ENA]
¡û
>W1710756905
LIBD01000002
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120820-bin23 [LIBD]
191
116
-
Gly
GCC
[ENA]
¡û
>W1710756953
LIBF01000003
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121001-bin59 [LIBF]
663
588
-
Gly
GCC
[ENA]
¡û
>W1710756988
LIBG01000121
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121022-bin9 [LIBG]
1
76
+
Gly
GCC
[ENA]
¡û
>W1710757394
LIBZ01000002
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120920-bin74 [LIBZ]
32035
32110
+
Gly
GCC
[ENA]
¡û
>W1710757829
LICQ01000006
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120507-bin0 [LICQ]
2656
2581
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK