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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46122 (67 seq.)
>W1710892672
LNDZ01000021
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
1241
1152
-
Ser
CGA
[ENA]
¡û
>W1711387327
MEGN01000003
Betaproteobacteria
Thiobacillus sp. SCN 65-179 [MEGN]
119082
118993
-
Ser
CGA
[ENA]
¡û
>W1711421829
MHZW01000192
Betaproteobacteria
Rhodocyclales bacterium GWA2_65_20 [MHZW]
55852
55941
+
Ser
CGA
[ENA]
¡û
>W1711504084
MKUF01000010
Betaproteobacteria
Thiobacillus sp. 65-69 [MKUF]
118616
118527
-
Ser
CGA
[ENA]
¡û
>C171065558
CP017668
Betaproteobacteria
Jeongeupia sp. USM3 [CP017668]
1421003
1421092
+
Ser
CGA
-
¡û
>W131050805
AMXC01000002
Betaproteobacteria
Thauera sp. 63 [AMXC]
174719
174630
-
Ser
CGA
[ENA]
¡û
>W131050874
AMXD01000067
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
6513
6424
-
Ser
CGA
[ENA]
¡û
>W131050911
AMXE01000006
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [AMXE]
91829
91740
-
Ser
CGA
[ENA]
¡û
>W131050960
AMXF01000014
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
22991
22902
-
Ser
CGA
[ENA]
¡û
>W131160262
AQWL01000003
Betaproteobacteria
Thiobacillus denitrificans DSM 12475 [AQWL]
139387
139298
-
Ser
CGA
[ENA]
¡û
>C001324
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
1445408
1445319
-
Ser
CGA
[Ensembl]
¡û
>C025391
CP000116
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [CP000116]
1289997
1290086
+
Ser
CGA
[Ensembl]
¡û
>WENV180036491
FVAA010130701
[FVAA] soil metagenome; Soil
13
100
+
Ser
CGA
[ENA]
¢þ
>WENV180311204
OBJT01162854
[OBJT] soil metagenome; soil
205
116
-
Ser
CGA
[ENA]
¢þ
>WENV180353869
OBLQ011135909
[OBLQ] soil metagenome; soil
91
180
+
Ser
CGA
[ENA]
¢þ
>W141078506
ATJV01000013
Betaproteobacteria
Thauera terpenica 58Eu [ATJV]
110298
110209
-
Ser
CGA
[ENA]
¡û
>WENV181173071
OEIV011177240
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
61
150
+
Ser
CGA
[ENA]
¢þ
>WENV181190893
OEPS010006608
[OEPS] soil metagenome; soil
219
308
+
Ser
CGA
[ENA]
¢þ
>WENV181367421
OFQB01000724
[OFQB] freshwater metagenome; Freshwater Lake
221
132
-
Ser
CGA
[ENA]
¢þ
>WENV181367751
OFQC01010435
[OFQC] freshwater metagenome; Freshwater Lake
417
328
-
Ser
CGA
[ENA]
¢þ
>WENV181368360
OFQL01001243
[OFQL] freshwater metagenome; Freshwater Lake
1716
1627
-
Ser
CGA
[ENA]
¢þ
>WENV181368786
OFQN01000499
[OFQN] freshwater metagenome; Freshwater Lake
989
900
-
Ser
CGA
[ENA]
¢þ
>WENV181369279
OFQP01000074
[OFQP] freshwater metagenome; Freshwater Lake
9066
9155
+
Ser
CGA
[ENA]
¢þ
>WENV181369908
OFQR01002172
[OFQR] freshwater metagenome; Freshwater Lake
1375
1286
-
Ser
CGA
[ENA]
¢þ
>WENV181370203
OFQS01000508
[OFQS] freshwater metagenome; Freshwater Lake
4100
4011
-
Ser
CGA
[ENA]
¢þ
>WENV181370593
OFQT01000562
[OFQT] freshwater metagenome; Freshwater Lake
110
21
-
Ser
CGA
[ENA]
¢þ
>WENV181395655
OFSB01000148
[OFSB] freshwater metagenome; Freshwater Lake
11582
11671
+
Ser
CGA
[ENA]
¢þ
>WENV181401785
OFTX01006491
[OFTX] sludge metagenome; sludge
92
3
-
Ser
CGA
[ENA]
¢þ
>WENV181411392
OGCI01023890
[OGCI] hot springs metagenome; Hot spring water
1586
1497
-
Ser
CGA
[ENA]
¢þ
>W08008001
ABKT01000015
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
79045
78959
-
Ser
CGA
[ENA]
¡û
>WENV181844171
OGVV01016145
[OGVV] freshwater metagenome; freshwater
353
442
+
Ser
CGA
[ENA]
¢þ
>WENV181853967
OGWJ01003224
[OGWJ] freshwater metagenome; freshwater
290
201
-
Ser
CGA
[ENA]
¢þ
>WENV181855340
OGWL01009171
[OGWL] freshwater metagenome; freshwater
697
786
+
Ser
CGA
[ENA]
¢þ
>WENV183672379
ORJL011165484
[ORJL] groundwater metagenome; groundwater
793
704
-
Ser
CGA
[ENA]
¢þ
>WENV170002549
AGTN01064747
[AGTN] bioreactor metagenome; poplar biomass
421
332
-
Ser
CGA
[ENA]
¢þ
>WENV170658057
JTFP01049753
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
219
130
-
Ser
CGA
[ENA]
¢þ
>WENV170662505
JXWW01087293
[JXWW] soil metagenome; rice field; organic GM Plot
374
463
+
Ser
CGA
[ENA]
¢þ
>WENV170705938
LNAP01000696
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5460
5371
-
Ser
CGA
[ENA]
¢þ
>WENV170709420
LNFM01000328
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
157061
157150
+
Ser
CGA
[ENA]
¢þ
>WENV170711130
LNFM01003699
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
90
1
-
Ser
CGA
[ENA]
¢þ
>WENV170711867
LNFM01007955
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
16264
16175
-
Ser
CGA
[ENA]
¢þ
>WENV170713781
LNFM01041811
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
90
1
-
Ser
CGA
[ENA]
¢þ
>C181060407
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
473265
473354
+
Ser
CGA
-
¡û
>C181060471
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
3336240
3336329
+
Ser
CGA
-
¡û
>C181081458
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
2326147
2326236
+
Ser
CGA
-
¡û
>W09101572
AAFH01000001
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [AAFH]
612209
612120
-
Ser
CGA
[ENA]
¡û
>W141561696
JHYR01000002
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [JHYR]
109535
109446
-
Ser
CGA
[ENA]
¡û
>W1910744084
MHZX01000092
Betaproteobacteria
Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24 [MHZX]
173186
173275
+
Ser
CGA
[ENA]
¡û
>W1911114372
NOIH01000015
Betaproteobacteria
Thauera propionica KNDSS-Mac4 [NOIH]
43210
43299
+
Ser
CGA
[ENA]
¡û
>W1810068140
PDZH01000233
Betaproteobacteria
Chitinimonas sp. BJB300 [PDZH]
721
632
-
Ser
CGA
[ENA]
¡û
>C10113220
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
1993874
1993785
-
Ser
CGA
[Ensembl]
¡û
>W1511398311
JTDM01000020
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
623171
623082
-
Ser
CGA
[ENA]
¡û
>W1511686476
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
2101684
2101595
-
Ser
CGA
[ENA]
¡û
>W11185955
CACR01002275
Betaproteobacteria
Thauera selenatis AX [CACR]
5873
5962
+
Ser
CGA
[ENA]
¡û
>C161075132
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
475033
474944
-
Ser
CGA
[Ensembl]
¡û
>C161095111
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
1530948
1530859
-
Ser
CGA
-
¡û
>W1610042927
BAZL01000592
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
1057
968
-
Ser
CGA
[ENA]
¡û
>W1610071673
BCUG01000002
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
162174
162263
+
Ser
CGA
[ENA]
¡û
>C131000323
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
3570180
3570091
-
Ser
CGA
[Ensembl]
¡û
>W1610593887
LDUG01000033
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
61366
61277
-
Ser
CGA
[ENA]
¡û
>W1610610083
LFZK01000001
Betaproteobacteria
Sterolibacterium denitrificans [LFZK]
59771
59682
-
Ser
CGA
[ENA]
¡û
>W1610752938
LNDZ01000021
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
1241
1152
-
Ser
CGA
[ENA]
¡û
>W1710040087
BAZL01000592
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
1057
968
-
Ser
CGA
[ENA]
¡û
>W1710068875
BCUG01000002
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
162174
162263
+
Ser
CGA
[ENA]
¡û
>W1710605602
FWXD01000031
Betaproteobacteria
Andreprevotia lacus DSM 23236 [FWXD]
20696
20607
-
Ser
CGA
[ENA]
¡û
>W1710713362
LDUG01000033
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
61366
61277
-
Ser
CGA
[ENA]
¡û
>W1710731428
LFZK01000001
Betaproteobacteria
Sterolibacterium denitrificans [LFZK]
59771
59682
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK