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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46143 (38 seq.)
>W1711224220
LXTW01000023
Gammaproteobacteria
Moraxella nonliquefaciens [LXTW]
55589
55678
+
Ser
GCT
[ENA]
¡û
>W1711268970
LZDM01000002
Gammaproteobacteria
Moraxella nonliquefaciens [LZDM]
78522
78433
-
Ser
GCT
[ENA]
¡û
>W1711269032
LZDN01000012
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
69797
69886
+
Ser
GCT
[ENA]
¡û
>W1711269200
LZDR01000053
Gammaproteobacteria
Moraxella lacunata [LZDR]
18267
18356
+
Ser
GCT
[ENA]
¡û
>W1711282088
LZMS01000118
Gammaproteobacteria
Moraxella lacunata [LZMS]
7465
7376
-
Ser
GCT
[ENA]
¡û
>W1711765729
MUXU01000027
Gammaproteobacteria
Moraxella caviae [MUXU]
53921
53832
-
Ser
GCT
[ENA]
¡û
>W1711765785
MUXV01000028
Gammaproteobacteria
Moraxella bovis [MUXV]
2305
2394
+
Ser
GCT
[ENA]
¡û
>W1711799832
MXAN01000012
Gammaproteobacteria
Moraxella lacunata [MXAN]
55838
55749
-
Ser
GCT
[ENA]
¡û
>W1711799948
MXAP01000125
Gammaproteobacteria
Moraxella equi [MXAP]
612
523
-
Ser
GCT
[ENA]
¡û
>W131228791
AUGF01000065
Gammaproteobacteria
Moraxella caprae DSM 19149 [AUGF]
6400
6489
+
Ser
GCT
[ENA]
¡û
>WENV180006821
FLRZ01000890
[FLRZ] metagenome; saliva
17914
18003
+
Ser
GCT
[ENA]
¢þ
>W141055149
AOMT01000031
Gammaproteobacteria
Moraxella bovoculi 237 [AOMT]
33390
33479
+
Ser
GCT
[ENA]
¡û
>WENV180711632
ODFQ01000012
[ODFQ] human metagenome; G_DNA_Anterior nares
9969
10058
+
Ser
GCT
[ENA]
¢þ
>WENV180838869
ODKH01000007
[ODKH] human metagenome; G_DNA_Anterior nares
78359
78270
-
Ser
GCT
[ENA]
¢þ
>WENV180844801
ODKO01008626
[ODKO] human metagenome; G_DNA_Anterior nares
107
196
+
Ser
GCT
[ENA]
¢þ
>WENV180966775
ODUR01008251
[ODUR] human metagenome; G_DNA_Anterior nares
316
227
-
Ser
GCT
[ENA]
¢þ
>WENV180972448
ODUV01000099
[ODUV] human metagenome; G_DNA_Anterior nares
2620
2531
-
Ser
GCT
[ENA]
¢þ
>WENV180984638
ODVI01000003
[ODVI] human metagenome; G_DNA_Anterior nares
69875
69964
+
Ser
GCT
[ENA]
¢þ
>WENV181082437
OEAU01000392
[OEAU] human metagenome; G_DNA_Anterior nares
506
595
+
Ser
GCT
[ENA]
¢þ
>WENV181114078
OEEO01000084
[OEEO] human metagenome; G_DNA_Supragingival plaque
67062
66973
-
Ser
GCT
[ENA]
¢þ
>WENV181131469
OEGC01000217
[OEGC] human metagenome; G_DNA_Anterior nares
934
1023
+
Ser
GCT
[ENA]
¢þ
>WENV181199410
OERH01000247
[OERH] metagenome; water of meat washing
4992
4903
-
Ser
GCT
[ENA]
¢þ
>C181190887
CP030241
Gammaproteobacteria
Moraxella bovis [CP030241]
2820066
2819977
-
Ser
GCT
-
¡û
>C191008766
CP011380
Gammaproteobacteria
Moraxella bovoculi 57922 [CP011380]
220710
220799
+
Ser
GCT
-
¡û
>C161032110
CP011158
Gammaproteobacteria
Moraxella ovis 199/55 [CP011158]
232805
232894
+
Ser
GCT
[Ensembl]
¡û
>C161034437
CP011374
Gammaproteobacteria
Moraxella bovoculi 58069 [CP011374]
218248
218337
+
Ser
GCT
[Ensembl]
¡û
>C161034486
CP011376
Gammaproteobacteria
Moraxella bovoculi 22581 [CP011376]
241438
241527
+
Ser
GCT
-
¡û
>C161034537
CP011377
Gammaproteobacteria
Moraxella bovoculi 23343 [CP011377]
237940
238029
+
Ser
GCT
-
¡û
>C161034586
CP011378
Gammaproteobacteria
Moraxella bovoculi 28389 [CP011378]
241309
241398
+
Ser
GCT
[Ensembl]
¡û
>C161034637
CP011379
Gammaproteobacteria
Moraxella bovoculi 33362 [CP011379]
237812
237901
+
Ser
GCT
-
¡û
>C161034688
CP011381
Gammaproteobacteria
Moraxella bovoculi 58086 [CP011381]
216204
216293
+
Ser
GCT
-
¡û
>W1610071880
BCUK01000038
Gammaproteobacteria
Moraxella lacunata NBRC 102154 [BCUK]
8904
8993
+
Ser
GCT
[ENA]
¡û
>W1611008591
LXTW01000023
Gammaproteobacteria
Moraxella nonliquefaciens [LXTW]
55589
55678
+
Ser
GCT
[ENA]
¡û
>W1611029782
LZDM01000002
Gammaproteobacteria
Moraxella nonliquefaciens [LZDM]
78522
78433
-
Ser
GCT
[ENA]
¡û
>W1611029844
LZDN01000012
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
69797
69886
+
Ser
GCT
[ENA]
¡û
>W1611030012
LZDR01000053
Gammaproteobacteria
Moraxella lacunata [LZDR]
18267
18356
+
Ser
GCT
[ENA]
¡û
>W1611041299
LZMS01000118
Gammaproteobacteria
Moraxella lacunata [LZMS]
7465
7376
-
Ser
GCT
[ENA]
¡û
>W1710069082
BCUK01000038
Gammaproteobacteria
Moraxella lacunata NBRC 102154 [BCUK]
8904
8993
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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