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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46161 (72 seq.)
>W1710899192
LNIT01000086
Gammaproteobacteria
Klebsiella pneumoniae [LNIT]
35596
35685
+
Ser
CGA
[ENA]
¡û
>W1711221819
LXRN01000016
Gammaproteobacteria
Klebsiella pneumoniae [LXRN]
39255
39344
+
Ser
CGA
[ENA]
¡û
>W1711345381
MCNT01000011
Gammaproteobacteria
Klebsiella pneumoniae [MCNT]
206444
206533
+
Ser
CGA
[ENA]
¡û
>W1711608993
MOSL01000126
Gammaproteobacteria
Klebsiella pneumoniae [MOSL]
1047
1136
+
Ser
CGA
[ENA]
¡û
>W1711641411
MPYS03000033
Gammaproteobacteria
Klebsiella pneumoniae [MPYS]
53486
53575
+
Ser
CGA
[ENA]
¡û
>W1711641499
MPYT03000055
Gammaproteobacteria
Klebsiella pneumoniae [MPYT]
660626
660537
-
Ser
CGA
[ENA]
¡û
>W1711903340
MZMY01000009
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae [MZMY]
35544
35633
+
Ser
CGA
[ENA]
¡û
>W1711951364
NBQB01000011
Gammaproteobacteria
Salmonella enterica subsp. arizonae serovar 50:r:z [NBQB]
155006
154917
-
Ser
CGA
[ENA]
¡û
>W1711954192
NBRK01000011
Gammaproteobacteria
Salmonella enterica subsp. diarizonae serovar Rough:r:z [NBRK]
154817
154728
-
Ser
CGA
[ENA]
¡û
>W1712050462
NFVI01000092
Gammaproteobacteria
Klebsiella pneumoniae [NFVI]
189646
189557
-
Ser
CGA
[ENA]
¡û
>W1712050538
NFVK01000002
Gammaproteobacteria
Klebsiella pneumoniae [NFVK]
75708
75797
+
Ser
CGA
[ENA]
¡û
>W1712054035
NFXM01000067
Gammaproteobacteria
Klebsiella pneumoniae [NFXM]
53778
53867
+
Ser
CGA
[ENA]
¡û
>WENV180415412
OBVE01000336
[OBVE] human gut metagenome; faeces
20540
20629
+
Ser
CGA
[ENA]
¢þ
>WENV181205670
OFAO01002371
[OFAO] metagenome; hydrothermal vent
478
567
+
Ser
CGA
[ENA]
¢þ
>WENV181205773
OFAP01002420
[OFAP] metagenome; hydrothermal vent
478
567
+
Ser
CGA
[ENA]
¢þ
>WENV181205986
OFAR01003240
[OFAR] metagenome; hydrothermal vent
478
567
+
Ser
CGA
[ENA]
¢þ
>WENV181206088
OFAS01005052
[OFAS] metagenome; hydrothermal vent
254
343
+
Ser
CGA
[ENA]
¢þ
>WENV181206454
OFAV01001647
[OFAV] metagenome; hydrothermal vent
478
567
+
Ser
CGA
[ENA]
¢þ
>WENV181206957
OFAX01006328
[OFAX] metagenome; hydrothermal vent
367
278
-
Ser
CGA
[ENA]
¢þ
>WENV181806780
OGSM01000004
[OGSM] human gut metagenome; fecal sample 1 from infant 7
171797
171708
-
Ser
CGA
[ENA]
¢þ
>WENV182408797
OIFG01000011
[OIFG] human gut metagenome; stool
33968
34057
+
Ser
CGA
[ENA]
¢þ
>WENV182817630
OJZM01000159
[OJZM] human gut metagenome; human gut
50403
50492
+
Ser
CGA
[ENA]
¢þ
>WENV170022482
BCQK01013964
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
128
217
+
Ser
CGA
[ENA]
¢þ
>C181157893
CP027612
Gammaproteobacteria
Klebsiella pneumoniae subsp. ozaenae AR_0096 [CP027612]
322688
322599
-
Ser
CGA
-
¡û
>C181195432
CP031101
Gammaproteobacteria
Leclercia sp. W17 w17 [CP031101]
1683474
1683563
+
Ser
CGA
-
¡û
>C181195500
CP031104
Gammaproteobacteria
Leclercia sp. W6 [CP031104]
624879
624968
+
Ser
CGA
-
¡û
>C191086129
CP032200
Gammaproteobacteria
Klebsiella pneumoniae AR_0097 [CP032200]
3732405
3732494
+
Ser
CGA
-
¡û
>C191221233
LR590464
Gammaproteobacteria
Leclercia adecarboxylata NCTC13032 [LR590464]
3205150
3205061
-
Ser
CGA
-
¡û
>W141710584
JMPM01000049
Gammaproteobacteria
Leclercia adecarboxylata ATCC 23216 = NBRC 102595 [JMPM]
66716
66627
-
Ser
CGA
[ENA]
¡û
>W141724813
JMZJ01000005
Gammaproteobacteria
Klebsiella pneumoniae MGH 74 [JMZJ]
466751
466662
-
Ser
CGA
[ENA]
¡û
>W1910281675
FQXW01000005
Gammaproteobacteria
Nissabacter archeti 2134 [FQXW]
6850
6939
+
Ser
CGA
[ENA]
¡û
>W1910455824
FWME01000001
Gammaproteobacteria
Klebsiella pneumoniae VRCO0408 [FWME]
126255
126344
+
Ser
CGA
[ENA]
¡û
>W1910456679
FWMP01000001
Gammaproteobacteria
Klebsiella pneumoniae VRCO0409 [FWMP]
126255
126344
+
Ser
CGA
[ENA]
¡û
>W1910469783
FWYP01000017
Gammaproteobacteria
Klebsiella pneumoniae Kp04_M [FWYP]
67934
67845
-
Ser
CGA
[ENA]
¡û
>W1910861715
NCMD01000005
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn24 [NCMD]
610581
610670
+
Ser
CGA
[ENA]
¡û
>W1910863297
NCMY01000048
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn46 [NCMY]
5716
5627
-
Ser
CGA
[ENA]
¡û
>W1910867695
NCPH01000005
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn107 [NCPH]
61535
61624
+
Ser
CGA
[ENA]
¡û
>W1910869111
NCQA01000019
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn126 [NCQA]
94428
94339
-
Ser
CGA
[ENA]
¡û
>W1911206190
NRJM01000088
Gammaproteobacteria
Cronobacter turicensis cro3064B1 [NRJM]
1256
1345
+
Ser
CGA
[ENA]
¡û
>W1911577324
PDLK01000002
Gammaproteobacteria
Leclercia adecarboxylata FDAARGOS_404 [PDLK]
2811521
2811432
-
Ser
CGA
[ENA]
¡û
>W1810132841
PIDH01000008
Gammaproteobacteria
Klebsiella pneumoniae D26 [PIDH]
67937
67848
-
Ser
CGA
[ENA]
¡û
>W1810133784
PIDT01000441
Gammaproteobacteria
Klebsiella pneumoniae D39 [PIDT]
2954
3043
+
Ser
CGA
[ENA]
¡û
>W1810133951
PIDV01000097
Gammaproteobacteria
Klebsiella pneumoniae D42 [PIDV]
4244
4155
-
Ser
CGA
[ENA]
¡û
>W1810134809
PIEH01000460
Gammaproteobacteria
Klebsiella pneumoniae D48 [PIEH]
519
430
-
Ser
CGA
[ENA]
¡û
>W1810135305
PIEO01000033
Gammaproteobacteria
Klebsiella pneumoniae D62 [PIEO]
60402
60491
+
Ser
CGA
[ENA]
¡û
>W1810181835
PJZF01000003
Gammaproteobacteria
Chimaeribacter californicus 2015Iso6 [PJZF]
30288
30199
-
Ser
CGA
[ENA]
¡û
>W1810181940
PJZG01000020
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 2013Iso5 [PJZG]
8249
8338
+
Ser
CGA
[ENA]
¡û
>W1810182014
PJZH01000028
Gammaproteobacteria
Chimaeribacter coloradensis 2016Iso4 [PJZH]
13167
13256
+
Ser
CGA
[ENA]
¡û
>W1810182072
PJZI01000024
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 [PJZI]
1024
1113
+
Ser
CGA
[ENA]
¡û
>W1810182157
PJZJ01000043
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 2016Iso2 [PJZJ]
1021
1110
+
Ser
CGA
[ENA]
¡û
>W1810182222
PJZK01000023
Gammaproteobacteria
Chimaeribacter arupi 2016Iso3 2016Iso1 [PJZK]
1312
1401
+
Ser
CGA
[ENA]
¡û
>W1810257803
PQJY01000004
Gammaproteobacteria
Leclercia sp. LSNIH8 [PQJY]
196621
196710
+
Ser
CGA
[ENA]
¡û
>W1810257926
PQKA01000001
Gammaproteobacteria
Leclercia sp. LSNIH6 [PQKA]
672323
672234
-
Ser
CGA
[ENA]
¡û
>W1810258161
PQKD01000001
Gammaproteobacteria
Leclercia sp. LSNIH7 [PQKD]
672349
672260
-
Ser
CGA
[ENA]
¡û
>W1810289996
PTFG01000140
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae 647/1569 [PTFG]
352316
352405
+
Ser
CGA
[ENA]
¡û
>W1810295087
PTII01000054
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae 1915/2933 [PTII]
167337
167426
+
Ser
CGA
[ENA]
¡û
>W1810370025
PWAR01000016
Gammaproteobacteria
Klebsiella pneumoniae SCKP020053 [PWAR]
150284
150373
+
Ser
CGA
[ENA]
¡û
>W1810376496
PXHZ01000023
Gammaproteobacteria
Klebsiella pneumoniae KPM-2 [PXHZ]
43333
43422
+
Ser
CGA
[ENA]
¡û
>W1511387683
JSVB01000004
Gammaproteobacteria
Klebsiella pneumoniae MRSN 1319 [JSVB]
377862
377773
-
Ser
CGA
[ENA]
¡û
>W1511394090
JTAX01000002
Gammaproteobacteria
Klebsiella pneumoniae FDAARGOS_84 [JTAX]
5189969
5189880
-
Ser
CGA
[ENA]
¡û
>W1511447496
JUYQ01000203
Gammaproteobacteria
Klebsiella michiganensis 649_KOXY [JUYQ]
1030
1119
+
Ser
CGA
[ENA]
¡û
>W1511447945
JUZE01000151
Gammaproteobacteria
Klebsiella michiganensis 636_KOXY [JUZE]
1024
1113
+
Ser
CGA
[ENA]
¡û
>W1511484422
JWPY01000061
Gammaproteobacteria
Klebsiella pneumoniae GN8 [JWPY]
76724
76635
-
Ser
CGA
[ENA]
¡û
>W121102579
AKXM01000030
Gammaproteobacteria
Enterobacter sp. Ag1 [AKXM]
36290
36379
+
Ser
CGA
[ENA]
¡û
>W1610062501
BCNP01000002
Gammaproteobacteria
Leclercia adecarboxylata ATCC 23216 = NBRC 102595 [BCNP]
324292
324381
+
Ser
CGA
[ENA]
¡û
>W1610484077
FLAW01000040
Gammaproteobacteria
Klebsiella pneumoniae k1031 [FLAW]
1502
1413
-
Ser
CGA
[ENA]
¡û
>W1610489472
FLDV01000001
Gammaproteobacteria
Klebsiella pneumoniae [FLDV]
382160
382249
+
Ser
CGA
[ENA]
¡û
>W1610508126
FLVD01000001
Gammaproteobacteria
Klebsiella pneumoniae PB209 [FLVD]
377677
377588
-
Ser
CGA
[ENA]
¡û
>W1610759596
LNIT01000086
Gammaproteobacteria
Klebsiella pneumoniae [LNIT]
35596
35685
+
Ser
CGA
[ENA]
¡û
>W1611006288
LXRN01000016
Gammaproteobacteria
Klebsiella pneumoniae [LXRN]
39255
39344
+
Ser
CGA
[ENA]
¡û
>W1710083744
BDLG01000026
Gammaproteobacteria
Klebsiella pneumoniae [BDLG]
35490
35579
+
Ser
CGA
[ENA]
¡û
>W1710482942
FLDV01000001
Gammaproteobacteria
Klebsiella pneumoniae [FLDV]
382160
382249
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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