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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462022 (115 seq.)
>W1711421879
MIAG01000001
Bacteroidota
Sphingobacteriia bacterium RIFOXYC2_FULL_35_18 [MIAG]
403810
403885
+
Phe
GAA
[ENA]
¡û
>W1711421910
MIAH01000001
Bacteroidota
Sphingobacteriia bacterium RIFOXYD2_FULL_35_12 [MIAH]
403299
403374
+
Phe
GAA
[ENA]
¡û
>W1711504412
MKUN01000041
Bacteroidota
Bacteroidetes bacterium 46-16 [MKUN]
134811
134888
+
Phe
GAA
[ENA]
¡û
>W1711715351
MTFE01000010
Bacteroidota
Cnuella takakiae [MTFE]
617988
618063
+
Phe
GAA
[ENA]
¡û
>C171057630
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
3186747
3186820
+
Phe
GAA
-
¡û
>C171057632
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
3188220
3188293
+
Phe
GAA
-
¡û
>W131170030
ARFF01000022
Bacteroidota
Niabella aurantiaca DSM 17617 [ARFF]
425
350
-
Phe
GAA
[ENA]
¡û
>WENV180029415
FTJK01000802
[FTJK] metagenome; soil
22970
22895
-
Phe
GAA
[ENA]
¢þ
>WENV180691934
OCZS010274922
[OCZS] soil metagenome; soil
271
198
-
Phe
GAA
[ENA]
¢þ
>WENV181226717
OFDN01000018
[OFDN] hot springs metagenome; Water
147387
147460
+
Phe
GAA
[ENA]
¢þ
>WENV181308500
OFIS01040540
[OFIS] sludge metagenome; sludge
568
641
+
Phe
GAA
[ENA]
¢þ
>WENV181401739
OFTX01004625
[OFTX] sludge metagenome; sludge
2412
2485
+
Phe
GAA
[ENA]
¢þ
>WENV181402611
OFTY01008353
[OFTY] sludge metagenome; sludge
1
74
+
Phe
GAA
[ENA]
¢þ
>W141167884
AXUM01000007
Bacteroidota
Sediminibacterium sp. C3 [AXUM]
352314
352239
-
Phe
GAA
[ENA]
¡û
>W141171286
AXZP01000092
Bacteroidota
Sediminibacterium salmoneum NBRC 103935 [AXZP]
9120
9195
+
Phe
GAA
[ENA]
¡û
>WENV181838823
OGVN01024031
[OGVN] freshwater metagenome; freshwater
620
694
+
Phe
GAA
[ENA]
¢þ
>WENV181839183
OGVO01000058
[OGVO] freshwater metagenome; freshwater
12744
12671
-
Phe
GAA
[ENA]
¢þ
>WENV181843124
OGVU01000996
[OGVU] freshwater metagenome; freshwater
3465
3538
+
Phe
GAA
[ENA]
¢þ
>WENV181844547
OGVW01006772
[OGVW] freshwater metagenome; freshwater
409
483
+
Phe
GAA
[ENA]
¢þ
>WENV181856115
OGWM01022501
[OGWM] freshwater metagenome; freshwater
432
505
+
Phe
GAA
[ENA]
¢þ
>WENV183727333
PJTO01029453
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
182
255
+
Phe
GAA
[ENA]
¢þ
>WENV183728931
PJTQ01001127
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1119
1046
-
Phe
GAA
[ENA]
¢þ
>WENV183729053
PJTQ01003346
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
2333
2406
+
Phe
GAA
[ENA]
¢þ
>WENV183730211
PJTR01004974
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
792
865
+
Phe
GAA
[ENA]
¢þ
>WENV183731502
PJTT01000011
[PJTT] soil metagenome; Soil (2) enriched on wood chips
442069
441996
-
Phe
GAA
[ENA]
¢þ
>WENV183731629
PJTT01000069
[PJTT] soil metagenome; Soil (2) enriched on wood chips
91997
92070
+
Phe
GAA
[ENA]
¢þ
>WENV183737663
PJUD01020517
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
604
531
-
Phe
GAA
[ENA]
¢þ
>WENV183740737
PJUF01008128
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1786
1859
+
Phe
GAA
[ENA]
¢þ
>WENV170010219
APMI01010939
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
9293
9368
+
Phe
GAA
[ENA]
¢þ
>WENV170011738
APMI01086737
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
8201
8276
+
Phe
GAA
[ENA]
¢þ
>WENV170551198
CXWJ01001208
[CXWJ] wastewater metagenome; activated sludge
2297
2370
+
Phe
GAA
[ENA]
¢þ
>WENV170650646
JRYE01008286
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
191
116
-
Phe
GAA
[ENA]
¢þ
>WENV170680981
LFEF01039598
[LFEF] freshwater metagenome; waterbloom
1105527
1105452
-
Phe
GAA
[ENA]
¢þ
>WENV170713843
LNFM01044077
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1434
1509
+
Phe
GAA
[ENA]
¢þ
>WENV170714527
LNFM01079515
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
56
129
+
Phe
GAA
[ENA]
¢þ
>WENV170980840
MWVT01002757
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
2709
2782
+
Phe
GAA
[ENA]
¢þ
>WENV170980843
MWVT01003294
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
735
660
-
Phe
GAA
[ENA]
¢þ
>WENV170981933
MWVT01268043
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
256
329
+
Phe
GAA
[ENA]
¢þ
>WENV170982058
MWVU01007793
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
1265
1190
-
Phe
GAA
[ENA]
¢þ
>WENV170982501
MWVU01121840
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
346
421
+
Phe
GAA
[ENA]
¢þ
>WENV170983269
MWVV01016721
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
681
606
-
Phe
GAA
[ENA]
¢þ
>WENV170984517
MWVV01323257
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
321
394
+
Phe
GAA
[ENA]
¢þ
>WENV170985013
MWVW01010009
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
508
581
+
Phe
GAA
[ENA]
¢þ
>WENV170985926
MWVX01007266
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
2655
2582
-
Phe
GAA
[ENA]
¢þ
>WENV170985974
MWVX01009572
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
2401
2326
-
Phe
GAA
[ENA]
¢þ
>WENV170986134
MWVX01017485
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1059
984
-
Phe
GAA
[ENA]
¢þ
>WENV170986238
MWVX01023384
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
358
433
+
Phe
GAA
[ENA]
¢þ
>WENV170986272
MWVX01027159
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
726
653
-
Phe
GAA
[ENA]
¢þ
>WENV170986444
MWVX01040389
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
369
444
+
Phe
GAA
[ENA]
¢þ
>WENV170986482
MWVX01043761
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1293
1218
-
Phe
GAA
[ENA]
¢þ
>WENV170986774
MWVX01077540
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
829
754
-
Phe
GAA
[ENA]
¢þ
>WENV170986794
MWVX01079898
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
43
118
+
Phe
GAA
[ENA]
¢þ
>WENV170986833
MWVX01084966
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
144
69
-
Phe
GAA
[ENA]
¢þ
>WENV170987230
MWVX01148805
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
422
349
-
Phe
GAA
[ENA]
¢þ
>WENV170987644
MWVX01236682
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
10
85
+
Phe
GAA
[ENA]
¢þ
>WENV170987844
MWVX01292448
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
317
390
+
Phe
GAA
[ENA]
¢þ
>WENV170988062
MWVX01353569
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
20
93
+
Phe
GAA
[ENA]
¢þ
>WENV170988156
MWVX01387625
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
141
214
+
Phe
GAA
[ENA]
¢þ
>WENV170988301
MWVX01447476
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
293
220
-
Phe
GAA
[ENA]
¢þ
>WENV170988966
MWVY01042368
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
323
250
-
Phe
GAA
[ENA]
¢þ
>WENV170989304
MWVZ01011005
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
1076
1003
-
Phe
GAA
[ENA]
¢þ
>WENV170989477
MWVZ01035237
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
339
414
+
Phe
GAA
[ENA]
¢þ
>WENV170989626
MWVZ01065899
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
552
625
+
Phe
GAA
[ENA]
¢þ
>WENV170990088
MWVZ01209254
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
97
172
+
Phe
GAA
[ENA]
¢þ
>WENV170990222
MWWA01000004
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
70920
70847
-
Phe
GAA
[ENA]
¢þ
>WENV170990431
MWWA01005880
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
74
1
-
Phe
GAA
[ENA]
¢þ
>WENV170990509
MWWA01011576
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
1286
1361
+
Phe
GAA
[ENA]
¢þ
>WENV170990517
MWWA01012306
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
1488
1563
+
Phe
GAA
[ENA]
¢þ
>WENV170990591
MWWA01021023
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
54
127
+
Phe
GAA
[ENA]
¢þ
>WENV170990672
MWWA01027035
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
898
973
+
Phe
GAA
[ENA]
¢þ
>WENV170990739
MWWA01036988
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
304
231
-
Phe
GAA
[ENA]
¢þ
>WENV170991530
MWWA01225221
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
155
230
+
Phe
GAA
[ENA]
¢þ
>WENV170992009
MWWA01407184
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
54
127
+
Phe
GAA
[ENA]
¢þ
>WENV170992063
MWWB01000423
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
869
796
-
Phe
GAA
[ENA]
¢þ
>WENV170993072
MWWB01174977
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
239
164
-
Phe
GAA
[ENA]
¢þ
>WENV170993173
MWWB01205141
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
55
128
+
Phe
GAA
[ENA]
¢þ
>WENV170993234
MWWB01228616
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
379
452
+
Phe
GAA
[ENA]
¢þ
>WENV170993757
MWWC01002157
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
2644
2569
-
Phe
GAA
[ENA]
¢þ
>WENV170994196
MWWD01031907
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
228
301
+
Phe
GAA
[ENA]
¢þ
>WENV170994533
MWWE01003842
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
1271
1344
+
Phe
GAA
[ENA]
¢þ
>WENV170994566
MWWE01007896
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
255
182
-
Phe
GAA
[ENA]
¢þ
>WENV170994632
MWWE01018836
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
909
836
-
Phe
GAA
[ENA]
¢þ
>WENV170994821
MWWE01062297
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
8
83
+
Phe
GAA
[ENA]
¢þ
>WENV170995217
MWWE01210884
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
175
100
-
Phe
GAA
[ENA]
¢þ
>WENV170995803
MWWF01064010
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
221
296
+
Phe
GAA
[ENA]
¢þ
>WENV170995953
MWWF01099715
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
445
518
+
Phe
GAA
[ENA]
¢þ
>WENV170996062
MWWF01132471
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
341
416
+
Phe
GAA
[ENA]
¢þ
>WENV170996652
MWWF01361645
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
171
244
+
Phe
GAA
[ENA]
¢þ
>WENV170997095
MWWG01030282
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
326
401
+
Phe
GAA
[ENA]
¢þ
>WENV170999311
MWWK01022866
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
207
132
-
Phe
GAA
[ENA]
¢þ
>WENV170999402
MWWK01047341
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
261
186
-
Phe
GAA
[ENA]
¢þ
>C191090817
CP032489
Bacteroidota
Arachidicoccus soli KIS59-12 [CP032489]
414115
414042
-
Phe
GAA
-
¡û
>C191153645
CP037755
Bacteroidota
Pseudocnuella soli 17J28-1 [CP037755]
598638
598711
+
Phe
GAA
-
¡û
>W1911647262
QAJI01000007
Bacteroidota
Taibaiella sp. KBW10 [QAJI]
166525
166452
-
Phe
GAA
[ENA]
¡û
>W1911647263
QAJI01000007
Bacteroidota
Taibaiella sp. KBW10 [QAJI]
155686
155611
-
Phe
GAA
[ENA]
¡û
>W1911647391
QAJL01000002
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
405216
405143
-
Phe
GAA
[ENA]
¡û
>W1911647392
QAJL01000002
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
402084
402011
-
Phe
GAA
[ENA]
¡û
>SRA1002786
SRR002326.15083
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
260
187
-
Phe
GAA
[SRA]
>W1810474624
QAIL01000024
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
19211
19284
+
Phe
GAA
[ENA]
¡û
>W1810676153
QKLU01000006
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
124471
124544
+
Phe
GAA
[ENA]
¡û
>W1810692632
QLKR01000002
Bacteroidota
Niabella yanshanensis HAMBI_3031 [QLKR]
688071
687998
-
Phe
GAA
[ENA]
¡û
>W1810745601
QOWJ01000002
Bacteroidota
Paracnuella aquatica N24 [QOWJ]
180790
180863
+
Phe
GAA
[ENA]
¡û
>W1810858462
QTJU01000001
Bacteroidota
Deminuibacter soli K23C18032701 [QTJU]
1118961
1119034
+
Phe
GAA
[ENA]
¡û
>C151016376
CP007035
Bacteroidota
Niabella soli DSM 19437 JS13-8; DSM 19437 [CP007035]
3368299
3368374
+
Phe
GAA
[Ensembl]
¡û
>C161049153
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
5506562
5506489
-
Phe
GAA
[Ensembl]
¡û
>C161049154
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
5506082
5506009
-
Phe
GAA
[Ensembl]
¡û
>C161090548
CP015772
Bacteroidota
Niabella ginsenosidivorans BS26 [CP015772]
5090842
5090767
-
Phe
GAA
[Ensembl]
¡û
>W121017766
AGSA01000028
Bacteroidota
Niabella soli DSM 19437 [AGSA]
1139411
1139486
+
Phe
GAA
[ENA]
¡û
>W1710512680
FMZO01000013
Bacteroidota
Niabella drilacis [FMZO]
40286
40361
+
Phe
GAA
[ENA]
¡û
>W1710522120
FNGY01000022
Bacteroidota
Pedobacter steynii [FNGY]
3407
3334
-
Phe
GAA
[ENA]
¡û
>W1710522122
FNGY01000022
Bacteroidota
Pedobacter steynii [FNGY]
272
199
-
Phe
GAA
[ENA]
¡û
>W1710533199
FNQY01000013
Bacteroidota
Arachidicoccus rhizosphaerae [FNQY]
28217
28142
-
Phe
GAA
[ENA]
¡û
>W1710583159
FQUO01000013
Bacteroidota
Cnuella takakiae [FQUO]
67031
67106
+
Phe
GAA
[ENA]
¡û
>W1710583246
FQUQ01000003
Bacteroidota
Pedobacter caeni [FQUQ]
723336
723409
+
Phe
GAA
[ENA]
¡û
>W1710583248
FQUQ01000003
Bacteroidota
Pedobacter caeni [FQUQ]
726468
726541
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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