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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462180 (81 seq.)
>W1710889316
LNAL01000007
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
825112
825039
-
Thr
TGT
[ENA]
¡û
>W1711043832
LRMM01000030
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
39529
39456
-
Thr
TGT
[ENA]
¡û
>W1711167063
LVWA01000003
Bacteroidota
Pontibacter flavimaris S10-8 [LVWA]
366881
366956
+
Thr
TGT
[ENA]
¡û
>W1711167064
LVWA01000003
Bacteroidota
Pontibacter flavimaris S10-8 [LVWA]
367012
367085
+
Thr
TGT
[ENA]
¡û
>W1711256659
LYSV01000026
Bacteroidota
Flammeovirgaceae bacterium BBD 1991-12 [LYSV]
24687
24614
-
Thr
TGT
[ENA]
¡û
>W1711504372
MKUM01000048
Bacteroidota
Candidatus Amoebophilus sp. 36-38 [MKUM]
3824
3747
-
Thr
TGT
[ENA]
¡û
>W1711767888
MVBC01000011
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
172977
172904
-
Thr
TGT
[ENA]
¡û
>W131053376
AMZY02000013
Bacteroidota
Mariniradius saccharolyticus AK6 [AMZY]
263041
263116
+
Thr
TGT
[ENA]
¡û
>W131065681
ANNU01000002
Bacteroidota
Nafulsella turpanensis ZLM-10 [ANNU]
206284
206211
-
Thr
TGT
[ENA]
¡û
>W131065682
ANNU01000002
Bacteroidota
Nafulsella turpanensis ZLM-10 [ANNU]
206177
206104
-
Thr
TGT
[ENA]
¡û
>W131146325
AQHR01000044
Bacteroidota
Lunatimonas lonarensis AK24 [AQHR]
1117
1044
-
Thr
TGT
[ENA]
¡û
>W131167798
ARDO01000004
Bacteroidota
Pontibacter roseus DSM 17521 [ARDO]
691162
691235
+
Thr
TGT
[ENA]
¡û
>W131167799
ARDO01000004
Bacteroidota
Pontibacter roseus DSM 17521 [ARDO]
691266
691339
+
Thr
TGT
[ENA]
¡û
>W131220004
ATZA01000004
Bacteroidota
Olivibacter sitiensis DSM 17696 [ATZA]
106292
106217
-
Thr
TGT
[ENA]
¡û
>WENV180018885
FTBA01000021
[FTBA] metagenome; soil
11933
11860
-
Thr
TGT
[ENA]
¢þ
>W141039121
ALWO02000020
Bacteroidota
Indibacter alkaliphilus LW1 [ALWO]
240
167
-
Thr
TGT
[ENA]
¡û
>W141043719
AMGM01000019
Bacteroidota
Cecembia lonarensis LW9 [AMGM]
57222
57149
-
Thr
TGT
[ENA]
¡û
>WENV181192211
OEPS010475275
[OEPS] soil metagenome; soil
107
34
-
Thr
TGT
[ENA]
¢þ
>W141152187
AXBP01000013
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
260455
260380
-
Thr
TGT
[ENA]
¡û
>W141152188
AXBP01000013
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
260325
260252
-
Thr
TGT
[ENA]
¡û
>C08000008
CP001102
Bacteroidota
Candidatus Amoebophilus asiaticus 5a2 [CP001102]
808260
808333
+
Thr
TGT
[Ensembl]
¡û
>WENV183729071
PJTQ01003932
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
2441
2514
+
Thr
TGT
[ENA]
¢þ
>WENV170193142
CEPH01019800
[CEPH] marine metagenome genome assembly TARA_048_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
52178
52105
-
Thr
TGT
[ENA]
¢þ
>WENV170320454
CESQ01398331
[CESQ] marine metagenome genome assembly TARA_100_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
789
862
+
Thr
TGT
[ENA]
¢þ
>WENV170414466
CEUK01222053
[CEUK] marine metagenome genome assembly TARA_125_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
206
279
+
Thr
TGT
[ENA]
¢þ
>WENV170469239
CEVF01096578
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
436
363
-
Thr
TGT
[ENA]
¢þ
>WENV170928608
MDTG01136493
[MDTG] marine metagenome; seawater
32256
32329
+
Thr
TGT
[ENA]
¢þ
>WENV170989804
MWVZ01107736
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
157
232
+
Thr
TGT
[ENA]
¢þ
>WENV170990894
MWWA01067241
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
673
600
-
Thr
TGT
[ENA]
¢þ
>WENV170991477
MWWA01208603
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
198
271
+
Thr
TGT
[ENA]
¢þ
>WENV170991478
MWWA01208603
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
331
404
+
Thr
TGT
[ENA]
¢þ
>W09107688
ABLI01000003
Bacteroidota
Candidatus Amoebophilus asiaticus asiaticus 5a2 [ABLI]
99345
99418
+
Thr
TGT
[ENA]
¡û
>C191018718
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
1296495
1296422
-
Thr
TGT
-
¡û
>C191018719
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
1296365
1296292
-
Thr
TGT
-
¡û
>C191087855
CP032317
Bacteroidota
Hymenobacter oligotrophus sh-6 [CP032317]
1026422
1026495
+
Thr
TGT
-
¡û
>C191175194
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
4308320
4308393
+
Thr
TGT
-
¡û
>W1910548600
FZOQ01000002
Bacteroidota
Pontibacter ummariensis NKM1 [FZOQ]
133036
132963
-
Thr
TGT
[ENA]
¡û
>W1910548601
FZOQ01000002
Bacteroidota
Pontibacter ummariensis NKM1 [FZOQ]
132903
132830
-
Thr
TGT
[ENA]
¡û
>W1910993939
NKXO01000014
Bacteroidota
Raineya orbicola SPSPC-11 [NKXO]
47937
47864
-
Thr
TGT
[ENA]
¡û
>W1911749357
QWGE01000002
Bacteroidota
Pontibacter oryzae KIRAN [QWGE]
348856
348783
-
Thr
TGT
[ENA]
¡û
>W1911749358
QWGE01000002
Bacteroidota
Pontibacter oryzae KIRAN [QWGE]
348726
348653
-
Thr
TGT
[ENA]
¡û
>W1810173061
PJMU01000001
Bacteroidota
Pontibacter ramchanderi LP43 [PJMU]
593717
593790
+
Thr
TGT
[ENA]
¡û
>W1810296316
PTJF01000006
Bacteroidota
Parapedobacter indicus RK1 [PTJF]
246737
246810
+
Thr
TGT
[ENA]
¡û
>W1810364987
PVTR01000001
Bacteroidota
Mongoliibacter ruber DSM 27929 [PVTR]
517384
517311
-
Thr
TGT
[ENA]
¡û
>W1810368046
PVZE01000002
Bacteroidota
Pontibacter ummariensis NKM1 [PVZE]
315180
315253
+
Thr
TGT
[ENA]
¡û
>W1810368047
PVZE01000002
Bacteroidota
Pontibacter ummariensis NKM1 [PVZE]
315313
315386
+
Thr
TGT
[ENA]
¡û
>W1810400570
PYGF01000001
Bacteroidota
Cecembia rubra DSM 28057 [PYGF]
716742
716669
-
Thr
TGT
[ENA]
¡û
>W1810503696
QBKI01000003
Bacteroidota
Pontibacter mucosus DSM 100162 [QBKI]
393083
393156
+
Thr
TGT
[ENA]
¡û
>W1810503697
QBKI01000003
Bacteroidota
Pontibacter mucosus DSM 100162 [QBKI]
393261
393334
+
Thr
TGT
[ENA]
¡û
>W1810572874
QEKI01000006
Bacteroidota
Pontibacter virosus DSM 100231 [QEKI]
35126
35199
+
Thr
TGT
[ENA]
¡û
>W1810572875
QEKI01000006
Bacteroidota
Pontibacter virosus DSM 100231 [QEKI]
35221
35294
+
Thr
TGT
[ENA]
¡û
>W1810625883
QHKM01000001
Bacteroidota
Hymenobacter edaphi NL [QHKM]
1072739
1072666
-
Thr
TGT
[ENA]
¡û
>W1810705047
QMIK01000001
Bacteroidota
Cognataquiflexum aquatile Z0201 [QMIK]
266538
266465
-
Thr
TGT
[ENA]
¡û
>W1810789229
QRGB01000001
Bacteroidota
Pedobacter indicus SM1810 [QRGB]
1752264
1752337
+
Thr
TGT
[ENA]
¡û
>W1810789480
QRGR01000004
Bacteroidota
Pontibacter diazotrophicus H4X [QRGR]
30974
31049
+
Thr
TGT
[ENA]
¡û
>W1810789481
QRGR01000004
Bacteroidota
Pontibacter diazotrophicus H4X [QRGR]
31104
31177
+
Thr
TGT
[ENA]
¡û
>C151056004
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
4214408
4214333
-
Thr
TGT
[Ensembl]
¡û
>C151056005
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
4214278
4214205
-
Thr
TGT
[Ensembl]
¡û
>C11121202
CP002584
Bacteroidota
Sphingobacterium sp. 21 [CP002584]
2965351
2965426
+
Thr
TGT
[Ensembl]
¡û
>C161076993
CP014766
Bacteroidota
Pontibacter akesuensis AKS 1T [CP014766]
4473239
4473314
+
Thr
TGT
-
¡û
>C161076994
CP014766
Bacteroidota
Pontibacter akesuensis AKS 1T [CP014766]
4473368
4473441
+
Thr
TGT
-
¡û
>W121064835
AJMQ01000096
Bacteroidota
Marinilabilia nitratireducens AK2 [AJMQ]
32913
32986
+
Thr
TGT
[ENA]
¡û
>W121084777
AKIS01000086
Bacteroidota
Pontibacter sp. BAB1700 [AKIS]
2758
2833
+
Thr
TGT
[ENA]
¡û
>C131003308
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
4075871
4075798
-
Thr
TGT
[Ensembl]
¡û
>C131003309
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
4075749
4075674
-
Thr
TGT
[Ensembl]
¡û
>W1610749694
LNAL01000007
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
825112
825039
-
Thr
TGT
[ENA]
¡û
>W1610885131
LRMM01000030
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
39529
39456
-
Thr
TGT
[ENA]
¡û
>W1611019684
LYSV01000026
Bacteroidota
Flammeovirgaceae bacterium BBD 1991-12 [LYSV]
24687
24614
-
Thr
TGT
[ENA]
¡û
>W1710520387
FNFO01000005
Bacteroidota
Catalinimonas alkaloidigena [FNFO]
4267
4192
-
Thr
TGT
[ENA]
¡û
>W1710542628
FNZH01000004
Bacteroidota
Cyclobacterium xiamenense halophilum [FNZH]
183282
183357
+
Thr
TGT
[ENA]
¡û
>W1710543109
FNZR01000001
Bacteroidota
Parapedobacter koreensis [FNZR]
705271
705196
-
Thr
TGT
[ENA]
¡û
>W1710543708
FOAF01000013
Bacteroidota
Olivibacter domesticus domesticum [FOAF]
46991
46916
-
Thr
TGT
[ENA]
¡û
>W1710557928
FOLL01000002
Bacteroidota
Parapedobacter composti [FOLL]
314206
314133
-
Thr
TGT
[ENA]
¡û
>W1710562142
FOOT01000001
Bacteroidota
Pontibacter chinhatensis [FOOT]
241131
241204
+
Thr
TGT
[ENA]
¡û
>W1710562143
FOOT01000001
Bacteroidota
Pontibacter chinhatensis [FOOT]
241308
241383
+
Thr
TGT
[ENA]
¡û
>W1710564538
FOQO01000006
Bacteroidota
Parapedobacter indicus [FOQO]
149101
149026
-
Thr
TGT
[ENA]
¡û
>W1710578988
FPCA01000001
Bacteroidota
Pontibacter akesuensis [FPCA]
640023
640098
+
Thr
TGT
[ENA]
¡û
>W1710578989
FPCA01000001
Bacteroidota
Pontibacter akesuensis [FPCA]
640152
640225
+
Thr
TGT
[ENA]
¡û
>W1710593077
FRCY01000014
Bacteroidota
Cyclobacterium lianum [FRCY]
68412
68339
-
Thr
TGT
[ENA]
¡û
>W1710597877
FTNM01000002
Bacteroidota
Pontibacter lucknowensis [FTNM]
562743
562668
-
Thr
TGT
[ENA]
¡û
>W1710602998
FUYS01000001
Bacteroidota
Parapedobacter luteus [FUYS]
231857
231932
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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