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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46228 (118 seq.)
>WENV180004669
FLRS01077261
[FLRS] metagenome; saliva
163
76
-
Ser
GCT
[ENA]
¢þ
>WENV180005067
FLRT01098067
[FLRT] metagenome; saliva
130
43
-
Ser
GCT
[ENA]
¢þ
>WENV180007296
FLRZ01315425
[FLRZ] metagenome; saliva
672
759
+
Ser
GCT
[ENA]
¢þ
>WENV180008250
FLSB01008724
[FLSB] metagenome; saliva
1054
967
-
Ser
GCT
[ENA]
¢þ
>WENV180009266
FLSC01000262
[FLSC] metagenome; saliva
15090
15177
+
Ser
GCT
[ENA]
¢þ
>WENV180010828
FLSD01219140
[FLSD] metagenome; saliva
204
117
-
Ser
GCT
[ENA]
¢þ
>WENV180704702
ODEJ01000025
[ODEJ] human metagenome; G_DNA_Tongue dorsum
61233
61146
-
Ser
GCT
[ENA]
¢þ
>WENV180709238
ODFJ01038323
[ODFJ] human metagenome; G_DNA_Tongue dorsum
130
43
-
Ser
GCT
[ENA]
¢þ
>WENV180717158
ODGA01054012
[ODGA] human metagenome; G_DNA_Buccal mucosa
222
135
-
Ser
GCT
[ENA]
¢þ
>WENV180720129
ODGJ01017840
[ODGJ] human metagenome; G_DNA_Tongue dorsum
1684
1771
+
Ser
GCT
[ENA]
¢þ
>WENV180722476
ODGM01000984
[ODGM] human metagenome; G_DNA_Palatine Tonsils
8692
8779
+
Ser
GCT
[ENA]
¢þ
>WENV180725123
ODGR01011486
[ODGR] human metagenome; G_DNA_Tongue dorsum
130
43
-
Ser
GCT
[ENA]
¢þ
>WENV180757034
ODHW01000012
[ODHW] human metagenome; G_DNA_Tongue dorsum
26484
26397
-
Ser
GCT
[ENA]
¢þ
>WENV180763190
ODIA01000226
[ODIA] human metagenome; G_DNA_Tongue dorsum
36879
36966
+
Ser
GCT
[ENA]
¢þ
>WENV180768904
ODIG01022736
[ODIG] human metagenome; G_DNA_Tongue dorsum
1684
1771
+
Ser
GCT
[ENA]
¢þ
>WENV180773841
ODIJ01002857
[ODIJ] human metagenome; G_DNA_Tongue dorsum
130
43
-
Ser
GCT
[ENA]
¢þ
>WENV180776863
ODIK01180893
[ODIK] human metagenome; G_DNA_Tongue dorsum
130
43
-
Ser
GCT
[ENA]
¢þ
>WENV180779458
ODIN01004891
[ODIN] human metagenome; G_DNA_Throat
2212
2125
-
Ser
GCT
[ENA]
¢þ
>WENV180782269
ODIP01050617
[ODIP] human metagenome; G_DNA_Supragingival plaque
268
181
-
Ser
GCT
[ENA]
¢þ
>WENV180783412
ODIQ01006189
[ODIQ] human metagenome; G_DNA_Tongue dorsum
1866
1953
+
Ser
GCT
[ENA]
¢þ
>WENV180790481
ODIT01015265
[ODIT] human metagenome; G_DNA_Tongue dorsum
1748
1835
+
Ser
GCT
[ENA]
¢þ
>WENV180793310
ODIW01014811
[ODIW] human metagenome; G_DNA_Tongue dorsum
1684
1771
+
Ser
GCT
[ENA]
¢þ
>WENV180794278
ODIZ01000057
[ODIZ] human metagenome; G_DNA_Tongue dorsum
61049
61136
+
Ser
GCT
[ENA]
¢þ
>WENV180797165
ODJB01033919
[ODJB] human metagenome; G_DNA_Supragingival plaque
372
285
-
Ser
GCT
[ENA]
¢þ
>WENV180802930
ODJE01016598
[ODJE] human metagenome; G_DNA_Tongue dorsum
169
82
-
Ser
GCT
[ENA]
¢þ
>WENV180807353
ODJI01001529
[ODJI] human metagenome; G_DNA_Tongue dorsum
10871
10958
+
Ser
GCT
[ENA]
¢þ
>WENV180809463
ODJK01019022
[ODJK] human metagenome; G_DNA_Subgingival plaque
277
190
-
Ser
GCT
[ENA]
¢þ
>WENV180815115
ODJP01000019
[ODJP] human metagenome; G_DNA_Tongue dorsum
98060
97973
-
Ser
GCT
[ENA]
¢þ
>WENV180819280
ODJR01000032
[ODJR] human metagenome; G_DNA_Tongue dorsum
47707
47620
-
Ser
GCT
[ENA]
¢þ
>WENV180821148
ODJS01000937
[ODJS] human metagenome; G_DNA_Tongue dorsum
188
101
-
Ser
GCT
[ENA]
¢þ
>WENV180830826
ODKB01014595
[ODKB] human metagenome; G_DNA_Tongue dorsum
1702
1789
+
Ser
GCT
[ENA]
¢þ
>WENV180854912
ODKX01017014
[ODKX] human metagenome; G_DNA_Tongue dorsum
1705
1792
+
Ser
GCT
[ENA]
¢þ
>WENV180855773
ODKZ01000013
[ODKZ] human metagenome; G_DNA_Tongue dorsum
123090
123177
+
Ser
GCT
[ENA]
¢þ
>WENV180858869
ODLC01046951
[ODLC] human metagenome; G_DNA_Tongue dorsum
195
282
+
Ser
GCT
[ENA]
¢þ
>WENV180861716
ODLE01009562
[ODLE] human metagenome; G_DNA_Tongue dorsum
2987
3074
+
Ser
GCT
[ENA]
¢þ
>WENV180863725
ODLH01001740
[ODLH] human metagenome; G_DNA_Tongue dorsum
193
106
-
Ser
GCT
[ENA]
¢þ
>WENV180865076
ODLI01014692
[ODLI] human metagenome; G_DNA_Buccal mucosa
630
717
+
Ser
GCT
[ENA]
¢þ
>WENV180866327
ODLJ01012585
[ODLJ] human metagenome; G_DNA_Tongue dorsum
1685
1772
+
Ser
GCT
[ENA]
¢þ
>WENV180872871
ODLP01000156
[ODLP] human metagenome; G_DNA_Tongue dorsum
40866
40953
+
Ser
GCT
[ENA]
¢þ
>WENV180874621
ODLQ01002283
[ODLQ] human metagenome; G_DNA_Tongue dorsum
193
106
-
Ser
GCT
[ENA]
¢þ
>WENV180878050
ODLV01010086
[ODLV] human metagenome; G_DNA_Tongue dorsum
469
382
-
Ser
GCT
[ENA]
¢þ
>WENV180880476
ODLZ01023983
[ODLZ] human metagenome; G_DNA_Tongue dorsum
1244
1331
+
Ser
GCT
[ENA]
¢þ
>WENV180884119
ODMC01044222
[ODMC] human metagenome; G_DNA_Tongue dorsum
610
697
+
Ser
GCT
[ENA]
¢þ
>WENV180890021
ODMO01000007
[ODMO] human metagenome; G_DNA_Tongue dorsum
170419
170506
+
Ser
GCT
[ENA]
¢þ
>WENV180896386
ODNI01000501
[ODNI] human metagenome; G_DNA_Tongue dorsum
31890
31977
+
Ser
GCT
[ENA]
¢þ
>WENV180901110
ODOJ01035155
[ODOJ] human metagenome; G_DNA_Tongue dorsum
445
532
+
Ser
GCT
[ENA]
¢þ
>WENV180902086
ODOK01015737
[ODOK] human metagenome; G_DNA_Tongue dorsum
1336
1423
+
Ser
GCT
[ENA]
¢þ
>WENV180916866
ODTD01001775
[ODTD] human metagenome; G_DNA_Tongue dorsum
7922
8009
+
Ser
GCT
[ENA]
¢þ
>WENV180920617
ODTH01011539
[ODTH] human metagenome; G_DNA_Tongue dorsum
1866
1953
+
Ser
GCT
[ENA]
¢þ
>WENV180929413
ODTN01002514
[ODTN] human metagenome; G_DNA_Tongue dorsum
5991
6078
+
Ser
GCT
[ENA]
¢þ
>WENV180931069
ODTP01001315
[ODTP] human metagenome; G_DNA_Tongue dorsum
15155
15068
-
Ser
GCT
[ENA]
¢þ
>WENV180949555
ODUG01021459
[ODUG] human metagenome; G_DNA_Tongue dorsum
1697
1784
+
Ser
GCT
[ENA]
¢þ
>WENV180953056
ODUI01007777
[ODUI] human metagenome; G_DNA_Tongue dorsum
932
845
-
Ser
GCT
[ENA]
¢þ
>WENV180953282
ODUI01017857
[ODUI] human metagenome; G_DNA_Tongue dorsum
1089
1002
-
Ser
GCT
[ENA]
¢þ
>WENV180953854
ODUJ01000014
[ODUJ] human metagenome; G_DNA_Tongue dorsum
29229
29316
+
Ser
GCT
[ENA]
¢þ
>WENV180959206
ODUM01000161
[ODUM] human metagenome; G_DNA_Tongue dorsum
61535
61622
+
Ser
GCT
[ENA]
¢þ
>WENV180968153
ODUT01011868
[ODUT] human metagenome; G_DNA_Tongue dorsum
575
488
-
Ser
GCT
[ENA]
¢þ
>WENV180977105
ODUZ01000007
[ODUZ] human metagenome; G_DNA_Tongue dorsum
42397
42484
+
Ser
GCT
[ENA]
¢þ
>WENV180985034
ODVJ01000420
[ODVJ] human metagenome; G_DNA_Tongue dorsum
24073
24160
+
Ser
GCT
[ENA]
¢þ
>WENV180989373
ODVL01139978
[ODVL] human metagenome; G_DNA_Tongue dorsum
91
178
+
Ser
GCT
[ENA]
¢þ
>WENV180990928
ODVN01008881
[ODVN] human metagenome; G_DNA_Tongue dorsum
2607
2694
+
Ser
GCT
[ENA]
¢þ
>WENV181003513
ODVX01015226
[ODVX] human metagenome; G_DNA_Supragingival plaque
732
645
-
Ser
GCT
[ENA]
¢þ
>WENV181010749
ODWI01000070
[ODWI] human metagenome; G_DNA_Tongue dorsum
182
95
-
Ser
GCT
[ENA]
¢þ
>WENV181013716
ODWN01003116
[ODWN] human metagenome; G_DNA_Tongue dorsum
4684
4597
-
Ser
GCT
[ENA]
¢þ
>WENV181016939
ODWR01014165
[ODWR] human metagenome; G_DNA_Tongue dorsum
1697
1784
+
Ser
GCT
[ENA]
¢þ
>WENV181020223
ODWU01077345
[ODWU] human metagenome; G_DNA_Supragingival plaque
372
459
+
Ser
GCT
[ENA]
¢þ
>WENV181020832
ODWV01000373
[ODWV] human metagenome; G_DNA_Tongue dorsum
21373
21460
+
Ser
GCT
[ENA]
¢þ
>WENV181027564
ODXD01010044
[ODXD] human metagenome; G_DNA_Buccal mucosa
707
794
+
Ser
GCT
[ENA]
¢þ
>WENV181032470
ODXN01000050
[ODXN] human metagenome; G_DNA_Tongue dorsum
269
182
-
Ser
GCT
[ENA]
¢þ
>WENV181039355
ODXQ01017946
[ODXQ] human metagenome; G_DNA_Tongue dorsum
130
43
-
Ser
GCT
[ENA]
¢þ
>WENV181041008
ODXS01003135
[ODXS] human metagenome; G_DNA_Tongue dorsum
6961
7048
+
Ser
GCT
[ENA]
¢þ
>WENV181044472
ODXV01010406
[ODXV] human metagenome; G_DNA_Tongue dorsum
2090
2177
+
Ser
GCT
[ENA]
¢þ
>WENV181045146
ODXW01000002
[ODXW] human metagenome; G_DNA_Tongue dorsum
193
106
-
Ser
GCT
[ENA]
¢þ
>WENV181051915
ODYE01007902
[ODYE] human metagenome; G_DNA_Tongue dorsum
1684
1771
+
Ser
GCT
[ENA]
¢þ
>WENV181057349
ODYL01000061
[ODYL] human metagenome; G_DNA_Tongue dorsum
114
27
-
Ser
GCT
[ENA]
¢þ
>WENV181059338
ODYM01000703
[ODYM] human metagenome; G_DNA_Tongue dorsum
274
187
-
Ser
GCT
[ENA]
¢þ
>WENV181062625
ODYO01000498
[ODYO] human metagenome; G_DNA_Palatine Tonsils
860
773
-
Ser
GCT
[ENA]
¢þ
>WENV181069048
ODZZ01009461
[ODZZ] human metagenome; G_DNA_Tongue dorsum
2115
2202
+
Ser
GCT
[ENA]
¢þ
>WENV181075419
OEAO01171484
[OEAO] human metagenome; G_DNA_Tongue dorsum
6
93
+
Ser
GCT
[ENA]
¢þ
>WENV181078203
OEAQ01024421
[OEAQ] human metagenome; G_DNA_Buccal mucosa
228
141
-
Ser
GCT
[ENA]
¢þ
>WENV181086842
OEAY01004257
[OEAY] human metagenome; G_DNA_Tongue dorsum
4702
4789
+
Ser
GCT
[ENA]
¢þ
>WENV181095826
OEBY01023323
[OEBY] human metagenome; G_DNA_Tongue dorsum
526
439
-
Ser
GCT
[ENA]
¢þ
>WENV181096985
OECA01001432
[OECA] human metagenome; G_DNA_Tongue dorsum
2749
2662
-
Ser
GCT
[ENA]
¢þ
>WENV181102360
OECT01002465
[OECT] human metagenome; G_DNA_Tongue dorsum
1014
927
-
Ser
GCT
[ENA]
¢þ
>WENV181103855
OECV01006554
[OECV] human metagenome; G_DNA_Throat
1454
1541
+
Ser
GCT
[ENA]
¢þ
>WENV181105740
OEED01013756
[OEED] human metagenome; G_DNA_Tongue dorsum
130
43
-
Ser
GCT
[ENA]
¢þ
>WENV181108286
OEEJ01000002
[OEEJ] human metagenome; G_DNA_Tongue dorsum
255096
255183
+
Ser
GCT
[ENA]
¢þ
>WENV181113236
OEEL01016336
[OEEL] human metagenome; G_DNA_Tongue dorsum
1498
1585
+
Ser
GCT
[ENA]
¢þ
>WENV181115085
OEEO01019374
[OEEO] human metagenome; G_DNA_Supragingival plaque
170
83
-
Ser
GCT
[ENA]
¢þ
>WENV181124571
OEFT01000093
[OEFT] human metagenome; G_DNA_Tongue dorsum
26437
26350
-
Ser
GCT
[ENA]
¢þ
>WENV181129007
OEFX01001889
[OEFX] human metagenome; G_DNA_Tongue dorsum
5700
5787
+
Ser
GCT
[ENA]
¢þ
>WENV181130219
OEFY01002959
[OEFY] human metagenome; G_DNA_Throat
3418
3505
+
Ser
GCT
[ENA]
¢þ
>WENV181135748
OEGG01147587
[OEGG] human metagenome; G_DNA_Tongue dorsum
169
82
-
Ser
GCT
[ENA]
¢þ
>WENV181139623
OEGN01016210
[OEGN] human metagenome; G_DNA_Tongue dorsum
130
43
-
Ser
GCT
[ENA]
¢þ
>WENV181141464
OEGT01005400
[OEGT] human metagenome; G_DNA_Throat
3418
3505
+
Ser
GCT
[ENA]
¢þ
>WENV181149981
OEHW01000179
[OEHW] human metagenome; G_DNA_Tongue dorsum
39487
39574
+
Ser
GCT
[ENA]
¢þ
>WENV181157050
OEIG01000217
[OEIG] human metagenome; G_DNA_Hard palate
130
43
-
Ser
GCT
[ENA]
¢þ
>WENV181159730
OEIK01000050
[OEIK] human metagenome; G_DNA_Supragingival plaque
59708
59621
-
Ser
GCT
[ENA]
¢þ
>WENV181175782
OEJQ01035806
[OEJQ] human metagenome; G_DNA_Tongue dorsum
130
43
-
Ser
GCT
[ENA]
¢þ
>WENV181176096
OEJR01000009
[OEJR] human metagenome; G_DNA_Saliva
51122
51035
-
Ser
GCT
[ENA]
¢þ
>W141145826
AWUZ01000051
Bacteroidota
Prevotella sp. F0091 [AWUZ]
61204
61291
+
Ser
GCT
[ENA]
¡û
>WENV181501594
OGGI01000686
[OGGI] metagenome; Human gut stool
2104
2191
+
Ser
GCT
[ENA]
¢þ
>WENV181574220
OGJS01023748
[OGJS] metagenome; Human gut stool
162
249
+
Ser
GCT
[ENA]
¢þ
>WENV181574483
OGJT01000473
[OGJT] metagenome; Human gut stool
20178
20265
+
Ser
GCT
[ENA]
¢þ
>W141226898
BAKO01000033
Bacteroidota
Prevotella fusca JCM 17724 [BAKO]
14543
14456
-
Ser
GCT
[ENA]
¡û
>W141274985
JACD01000072
Bacteroidota
Prevotella sp. ICM33 [JACD]
92890
92803
-
Ser
GCT
[ENA]
¡û
>C181056012
CP022041
Bacteroidota
Prevotella melaninogenica FDAARGOS_306 [CP022040, CP022041]
1007396
1007483
+
Ser
GCT
-
¡û
>C181091418
CP023864
Bacteroidota
Prevotella jejuni CD3:33 [CP023863, CP023864]
418286
418199
-
Ser
GCT
-
¡û
>W09134420
ACSI01000013
Bacteroidota
Prevotella melaninogenica ATCC 25845 [ACSI]
174381
174294
-
Ser
GCT
[ENA]
¡û
>W1910547699
FZNZ01000013
Bacteroidota
Prevotella jejuni DSM 26989 [FZNZ]
101590
101503
-
Ser
GCT
[ENA]
¡û
>W1810427379
PYXE01000001
Bacteroidota
Prevotella sp. oral taxon 313 oral taxon 313 F0648 [PYXE]
1298779
1298692
-
Ser
GCT
[ENA]
¡û
>C151090680
CP012075
Bacteroidota
Prevotella fusca JCM 17724 W1435 [CP012074, CP012075]
483438
483351
-
Ser
GCT
-
¡û
>W10104983
ACWY01000049
Bacteroidota
Prevotella melaninogenica D18 [ACWY]
28700
28613
-
Ser
GCT
[ENA]
¡û
>C10110285
CP002123
Bacteroidota
Prevotella melaninogenica ATCC 25845 [CP002122, CP002123]
473530
473617
+
Ser
GCT
[Ensembl]
¡û
>W11107303
ACWY01000049
Bacteroidota
Prevotella melaninogenica D18 [ACWY]
28700
28613
-
Ser
GCT
[ENA]
¡û
>W11113789
ADCT01000036
Bacteroidota
Prevotella sp. C561 [ADCT]
12656
12569
-
Ser
GCT
[ENA]
¡û
>C161095007
CP016205
Bacteroidota
Prevotella scopos JCM 17725 W2052 [CP016204, CP016205]
1271479
1271566
+
Ser
GCT
-
¡û
>W1710585002
FQWA01000002
Bacteroidota
Prevotella scopos JCM 17725 [FQWA]
33929
34016
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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