This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46237 (63 seq.)
>W1710797322
LJSY01000051
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO18 [LJSY]
11763
11674
-
Ser
TGA
[ENA]
¡û
>W1711054873
LRUD01000043
Alphaproteobacteria
Celeribacter halophilus [LRUD]
4137
4048
-
Ser
TGA
[ENA]
¡û
>W1711175261
LWEQ01000243
Alphaproteobacteria
Sulfitobacter sp. HI0023 HI0023 [LWEQ]
888
977
+
Ser
TGA
[ENA]
¡û
>W1711175690
LWEX01000278
Alphaproteobacteria
Sulfitobacter sp. HI0040 HI0040 [LWEX]
676
587
-
Ser
TGA
[ENA]
¡û
>W1711177832
LWGH01000317
Alphaproteobacteria
Sulfitobacter sp. HI0129 HI0129 [LWGH]
636
547
-
Ser
TGA
[ENA]
¡û
>W1711229363
LXYJ01000018
Alphaproteobacteria
Jannaschia sp. EhC01 [LXYJ]
14961
15050
+
Ser
TGA
[ENA]
¡û
>W1711572383
MNBL01000019
Alphaproteobacteria
Nioella sediminis JS7-11 [MNBL]
26678
26589
-
Ser
TGA
[ENA]
¡û
>W1711572428
MNBW01000001
Alphaproteobacteria
Nioella nitratireducens [MNBW]
1622
1533
-
Ser
TGA
[ENA]
¡û
>W131045388
AMRK01000003
Alphaproteobacteria
Celeribacter baekdonensis B30 [AMRK]
306594
306505
-
Ser
TGA
[ENA]
¡û
>C011067
CP000264
Alphaproteobacteria
Jannaschia sp. CCS1 [CP000264]
1240889
1240978
+
Ser
TGA
[Ensembl]
¡û
>C018371
CP000362
Alphaproteobacteria
Roseobacter denitrificans OCh 114 [CP000362]
3334264
3334175
-
Ser
TGA
[Ensembl]
¡û
>w012785
AAMT01000011
Alphaproteobacteria
Maritimibacter alkaliphilus HTCC2654 [AAMT]
19778
19687
-
Ser
TGA
[ENA]
¡û
>w012523
AAMO01000002
Alphaproteobacteria
Pseudooceanicola batsensis HTCC2597 [AAMO]
101404
101318
-
Ser
TGA
[ENA]
¡û
>WENV181234014
OFET01000818
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
13062
13151
+
Ser
TGA
[ENA]
¢þ
>WENV181234373
OFEU01000075
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
124159
124248
+
Ser
TGA
[ENA]
¢þ
>W08005904
ABIG01000002
Alphaproteobacteria
Roseobacter litoralis Och 149 [ABIG]
252862
252776
-
Ser
TGA
[ENA]
¡û
>WENV170013164
ATLU01000121
[ATLU] bioreactor metagenome; continuous culture bioreactor inoculated with sediment procaryotes from the German
13781
13692
-
Ser
TGA
[ENA]
¢þ
>WENV170016191
AZIJ01015381
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
843
754
-
Ser
TGA
[ENA]
¢þ
>WENV170016439
AZIK01005350
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
230
141
-
Ser
TGA
[ENA]
¢þ
>WENV170121094
CENL01049333
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
25616
25527
-
Ser
TGA
[ENA]
¢þ
>WENV170266619
CERE01094310
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2
91
+
Ser
TGA
[ENA]
¢þ
>WENV170550820
CXWF01033136
[CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5951
5862
-
Ser
TGA
[ENA]
¢þ
>WENV170655075
JTFN01004127
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
7
96
+
Ser
TGA
[ENA]
¢þ
>WENV170655607
JTFN01051383
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
13
102
+
Ser
TGA
[ENA]
¢þ
>WENV170655772
JTFN01071463
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
264
175
-
Ser
TGA
[ENA]
¢þ
>WENV170655903
JTFN01093685
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
383
294
-
Ser
TGA
[ENA]
¢þ
>C181152306
CP027407
Alphaproteobacteria
Roseobacter denitrificans FDAARGOS_309 [CP027407]
1357381
1357292
-
Ser
TGA
-
¡û
>W09102763
AAIG01000024
Alphaproteobacteria
Jannaschia sp. CCS1 [AAIG]
2257
2168
-
Ser
TGA
[ENA]
¡û
>C191160530
CP038492
Alphaproteobacteria
Rhodophyticola sp. CCM32 [CP038492]
15691
15602
-
Ser
TGA
-
¡û
>W1910442737
FWFM01000001
Alphaproteobacteria
Marinovum algicola CECT 5396 [FWFM]
531861
531950
+
Ser
TGA
[ENA]
¡û
>W1910442792
FWFN01000003
Alphaproteobacteria
Pseudooceanicola marinus CECT 7751 [FWFN]
511431
511342
-
Ser
TGA
[ENA]
¡û
>W1910443113
FWFU01000001
Alphaproteobacteria
Roseovarius halotolerans CECT 8110 [FWFU]
449337
449248
-
Ser
TGA
[ENA]
¡û
>W1910584231
JXTF01000019
Alphaproteobacteria
Roseovarius sp. JS7-11 [JXTF]
26678
26589
-
Ser
TGA
[ENA]
¡û
>W1911237163
NSBT01000026
Alphaproteobacteria
Actibacterium ureilyticum LS-811 [NSBT]
137425
137514
+
Ser
TGA
[ENA]
¡û
>W1911492660
OBEA01000002
Alphaproteobacteria
Pseudooceanicola antarcticus CGMCC 1.12662 [OBEA]
357467
357556
+
Ser
TGA
[ENA]
¡û
>W1810101689
PGTC01000010
Alphaproteobacteria
Pseudooceanicola marinus LMG 23705 [PGTC]
119641
119730
+
Ser
TGA
[ENA]
¡û
>W1810101761
PGTD01000016
Alphaproteobacteria
Pseudooceanicola antarcticus Ar-45 [PGTD]
376979
376890
-
Ser
TGA
[ENA]
¡û
>W1810580466
QETF01000018
Alphaproteobacteria
Salibaculum griseiflavum WDS4C29 [QETF]
31455
31544
+
Ser
TGA
[ENA]
¡û
>W1810633782
QITQ01000009
Alphaproteobacteria
Roseovarius amoyensis GCL-8 [QITQ]
130588
130677
+
Ser
TGA
[ENA]
¡û
>W1810670819
QJSD01000017
Alphaproteobacteria
Primorskyibacter marinus PX7 [QJSD]
8900
8811
-
Ser
TGA
[ENA]
¡û
>W1810685598
QKZJ01000021
Alphaproteobacteria
Celeribacter halophilus DSM 26270 [QKZJ]
3867
3778
-
Ser
TGA
[ENA]
¡û
>C151073494
CP010855
Alphaproteobacteria
Marinovum algicola DG 898 [CP010855]
1556243
1556332
+
Ser
TGA
[Ensembl]
¡û
>C11118680
CP002623
Alphaproteobacteria
Roseobacter litoralis Och 149 [CP002623]
2724073
2723984
-
Ser
TGA
[Ensembl]
¡û
>W1610018436
AQQX01000002
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
34570
34481
-
Ser
TGA
[ENA]
¡û
>WENV070940
AACY023829175
Marine microbial communities from Global Ocean Sampling (GOS)
1459
1368
-
Ser
TGA
[ENA]
>W1610661279
LJSY01000051
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO18 [LJSY]
11763
11674
-
Ser
TGA
[ENA]
¡û
>W1610895919
LRUD01000043
Alphaproteobacteria
Celeribacter halophilus [LRUD]
4137
4048
-
Ser
TGA
[ENA]
¡û
>W1610983574
LWEQ01000243
Alphaproteobacteria
Sulfitobacter sp. HI0023 HI0023 [LWEQ]
888
977
+
Ser
TGA
[ENA]
¡û
>W1610984003
LWEX01000278
Alphaproteobacteria
Sulfitobacter sp. HI0040 HI0040 [LWEX]
676
587
-
Ser
TGA
[ENA]
¡û
>W1610986145
LWGH01000317
Alphaproteobacteria
Sulfitobacter sp. HI0129 HI0129 [LWGH]
636
547
-
Ser
TGA
[ENA]
¡û
>W1611013233
LXYJ01000018
Alphaproteobacteria
Jannaschia sp. EhC01 [LXYJ]
14961
15050
+
Ser
TGA
[ENA]
¡û
>W1710015652
AQQX01000002
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
34570
34481
-
Ser
TGA
[ENA]
¡û
>W1710515019
FNBL01000001
Alphaproteobacteria
Celeribacter baekdonensis [FNBL]
416446
416357
-
Ser
TGA
[ENA]
¡û
>W1710518522
FNEB01000009
Alphaproteobacteria
Lutimaribacter saemankumensis [FNEB]
104581
104670
+
Ser
TGA
[ENA]
¡û
>W1710542160
FNYY01000002
Alphaproteobacteria
Marinovum algicola [FNYY]
2182
2093
-
Ser
TGA
[ENA]
¡û
>W1710555879
FOJU01000007
Alphaproteobacteria
Poseidonocella pacifica [FOJU]
36981
37070
+
Ser
TGA
[ENA]
¡û
>W1710562012
FOOO01000007
Alphaproteobacteria
Roseobacter denitrificans OCh 114 [FOOO]
201907
201996
+
Ser
TGA
[ENA]
¡û
>W1710566429
FORY01000019
Alphaproteobacteria
Celeribacter halophilus [FORY]
3867
3778
-
Ser
TGA
[ENA]
¡û
>W1710572908
FOXA01000010
Alphaproteobacteria
Tranquillimonas alkanivorans [FOXA]
111850
111761
-
Ser
TGA
[ENA]
¡û
>W1710574556
FOYI01000003
Alphaproteobacteria
Poseidonocella sedimentorum [FOYI]
350835
350924
+
Ser
TGA
[ENA]
¡û
>W1710591404
FRBR01000019
Alphaproteobacteria
Roseovarius pacificus [FRBR]
25965
26054
+
Ser
TGA
[ENA]
¡û
>W1710594781
FSRL01000001
Alphaproteobacteria
Vannielia litorea litoreus [FSRL]
2081465
2081376
-
Ser
TGA
[ENA]
¡û
>W1710606911
FWYD01000023
Alphaproteobacteria
Primorskyibacter flagellatus [FWYD]
15285
15196
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK