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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46262 (94 seq.)
>W1710797137
LJSU01000009
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
112101
112012
-
Ser
CGA
[ENA]
¡û
>W1710991281
LPXO01000003
Alphaproteobacteria
Pseudoponticoccus marisrubri SJ5A-1 [LPXO]
96022
95933
-
Ser
CGA
[ENA]
¡û
>W1711175267
LWEQ01000459
Alphaproteobacteria
Sulfitobacter sp. HI0023 HI0023 [LWEQ]
13675
13764
+
Ser
CGA
[ENA]
¡û
>W1711175668
LWEX01000072
Alphaproteobacteria
Sulfitobacter sp. HI0040 HI0040 [LWEX]
3398
3309
-
Ser
CGA
[ENA]
¡û
>W1711175829
LWFA01000335
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
12955
13044
+
Ser
CGA
[ENA]
¡û
>W1711176074
LWFD01000047
Alphaproteobacteria
Sulfitobacter sp. HI0054 [LWFD]
12859
12948
+
Ser
CGA
[ENA]
¡û
>W1711177839
LWGH01000413
Alphaproteobacteria
Sulfitobacter sp. HI0129 HI0129 [LWGH]
3353
3264
-
Ser
CGA
[ENA]
¡û
>W1711229680
LXYQ01000143
Alphaproteobacteria
Roseovarius indicus [LXYQ]
12782
12871
+
Ser
CGA
[ENA]
¡û
>W1711695303
MSIT01000001
Alphaproteobacteria
Salibaculum halophilum WDS1C4 [MSIT]
144523
144612
+
Ser
CGA
[ENA]
¡û
>W1711709193
MSYP01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYP]
2600675
2600764
+
Ser
CGA
[ENA]
¡û
>W1711709268
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
1869465
1869554
+
Ser
CGA
[ENA]
¡û
>W131050045
AMWC01000026
Alphaproteobacteria
Donghicola sp. S598 [AMWC]
4913
4824
-
Ser
CGA
[ENA]
¡û
>W131164656
ARAY01000017
Alphaproteobacteria
Wenxinia marina DSM 24838 [ARAY]
41021
40932
-
Ser
CGA
[ENA]
¡û
>W131242017
BASI01000002
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
725262
725173
-
Ser
CGA
[ENA]
¡û
>C171032421
CP014595
Alphaproteobacteria
Salipiger sp. CCB-MM3 [CP014595, CP014596]
289920
290009
+
Ser
CGA
-
¡û
>C171033701
CP014796
Alphaproteobacteria
Salipiger profundus JLT2016 [CP014796]
3573700
3573611
-
Ser
CGA
-
¡û
>C171035440
CP015093
Alphaproteobacteria
Salipiger abyssi JLT2014 [CP015093]
3893734
3893823
+
Ser
CGA
-
¡û
>C171072483
CP018076
Alphaproteobacteria
Sulfitobacter alexandrii AM1-D1 [CP018076]
1791480
1791569
+
Ser
CGA
-
¡û
>C171105934
CP020384
Alphaproteobacteria
Rhodovulum sp. MB263 [CP020384]
1461516
1461427
-
Ser
CGA
-
¡û
>w023633
AAYA01000004
Alphaproteobacteria
Sagittula stellata E-37 [AAYA]
340662
340571
-
Ser
CGA
[ENA]
¡û
>w018843
AATQ01000067
Alphaproteobacteria
Salipiger bermudensis HTCC2601 [AATQ]
20187
20096
-
Ser
CGA
[ENA]
¡û
>w012529
AAMO01000004
Alphaproteobacteria
Pseudooceanicola batsensis HTCC2597 [AAMO]
241726
241635
-
Ser
CGA
[ENA]
¡û
>WENV180294401
OBIY01122130
[OBIY] beach sand metagenome; beach sand
68
157
+
Ser
CGA
[ENA]
¢þ
>WENV181234232
OFEU01000010
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
228825
228914
+
Ser
CGA
[ENA]
¢þ
>W141278727
JAFT01000005
Alphaproteobacteria
Oceanicola sp. HL-35 [JAFT]
2901868
2901779
-
Ser
CGA
[ENA]
¡û
>W141284826
JAME01000031
Alphaproteobacteria
Roseivivax isoporae LMG 25204 [JAME]
59660
59749
+
Ser
CGA
[ENA]
¡û
>WENV170682484
LFIK01000189
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
42206
42295
+
Ser
CGA
[ENA]
¢þ
>WENV170682616
LFIK01000540
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
91
2
-
Ser
CGA
[ENA]
¢þ
>WENV170683014
LFIK01003467
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
36
125
+
Ser
CGA
[ENA]
¢þ
>WENV170683648
LFIK01017817
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
5238
5149
-
Ser
CGA
[ENA]
¢þ
>WENV170920792
MDTG01003100
[MDTG] marine metagenome; seawater
178658
178747
+
Ser
CGA
[ENA]
¢þ
>WENV170963555
MRWG01000286
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
31905
31816
-
Ser
CGA
[ENA]
¢þ
>C181060528
CP022189
Alphaproteobacteria
Alloyangia pacifica YSBP01 [CP022189, CP022190]
1625856
1625945
+
Ser
CGA
-
¡û
>W09132543
ACNW01000080
Alphaproteobacteria
Citreicella sp. SE45 [ACNW]
11777
11866
+
Ser
CGA
[ENA]
¡û
>W1910442668
FWFK01000003
Alphaproteobacteria
Roseivivax jejudonensis CECT 8625 [FWFK]
258970
259059
+
Ser
CGA
[ENA]
¡û
>W1910442817
FWFN01000010
Alphaproteobacteria
Pseudooceanicola marinus CECT 7751 [FWFN]
51420
51509
+
Ser
CGA
[ENA]
¡û
>W1910443340
FWFZ01000014
Alphaproteobacteria
Roseisalinus antarcticus CECT 7023 [FWFZ]
9042
8953
-
Ser
CGA
[ENA]
¡û
>W1910548472
FZON01000083
Alphaproteobacteria
Antarctobacter heliothermus DSM 11445 [FZON]
11461
11550
+
Ser
CGA
[ENA]
¡û
>W1911281177
NTHN01000396
Alphaproteobacteria
Alloyangia mangrovi SAOS 153D [NTHN]
2127
2038
-
Ser
CGA
[ENA]
¡û
>W1911495009
OBMN01000001
Alphaproteobacteria
Phaeovulum vinaykumarii JA123 [OBMN]
694166
694077
-
Ser
CGA
[ENA]
¡û
>W1911638526
PVWS01000007
Alphaproteobacteria
Roseovarius sp. A46 [PVWS]
31335
31246
-
Ser
CGA
[ENA]
¡û
>W1911653457
QDFI01000007
Alphaproteobacteria
Phycocomes zhengii LMIT002 [QDFI]
97646
97735
+
Ser
CGA
[ENA]
¡û
>W1810061247
PDNI01000010
Alphaproteobacteria
Roseovarius nitratireducens TFZ [PDNI]
111345
111434
+
Ser
CGA
[ENA]
¡û
>W1810101679
PGTC01000008
Alphaproteobacteria
Pseudooceanicola marinus LMG 23705 [PGTC]
101470
101381
-
Ser
CGA
[ENA]
¡û
>W1810235317
PPFE01000001
Alphaproteobacteria
Roseovarius confluentis SAG6 [PPFE]
392672
392761
+
Ser
CGA
[ENA]
¡û
>W1810268903
PRDS01000007
Alphaproteobacteria
Albidovulum inexpectatum DSM 12048 [PRDS]
92455
92366
-
Ser
CGA
[ENA]
¡û
>W1810503959
QBKN01000014
Alphaproteobacteria
Allosediminivita pacifica DSM 29329 [QBKN]
546
457
-
Ser
CGA
[ENA]
¡û
>W1810603209
QGKU01000012
Alphaproteobacteria
Meridianimarinicoccus roseus TG-679 [QGKU]
48951
48862
-
Ser
CGA
[ENA]
¡û
>W1810692277
QLIW01000001
Alphaproteobacteria
Rhodobacteraceae bacterium AsT-22 [QLIW]
183088
182999
-
Ser
CGA
[ENA]
¡û
>W1810722644
QNVJ01000064
Alphaproteobacteria
Alkalilacustris brevis 34079 [QNVJ]
360895
360984
+
Ser
CGA
[ENA]
¡û
>W1810762278
QPMK01000005
Alphaproteobacteria
Thalassococcus profundi WRAS1 [QPMK]
183194
183283
+
Ser
CGA
[ENA]
¡û
>W1810913120
QVMW01000005
Alphaproteobacteria
Rhodobacteraceae bacterium 63075 [QVMW]
8918
8829
-
Ser
CGA
[ENA]
¡û
>WENV040772
AACY022107606
Marine microbial communities from Global Ocean Sampling (GOS)
75
166
+
Ser
CGA
[ENA]
>C161001446
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
2659215
2659304
+
Ser
CGA
[Ensembl]
¡û
>C161087746
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
2179740
2179651
-
Ser
CGA
-
¡û
>C161087795
CP015421
Alphaproteobacteria
Rhodovulum sulfidophilum SNK001 [CP015421]
2143861
2143772
-
Ser
CGA
[Ensembl]
¡û
>W1610014761
AONG01000020
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
60892
60981
+
Ser
CGA
[ENA]
¡û
>W1610018463
AQQX01000011
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
14174
14085
-
Ser
CGA
[ENA]
¡û
>W1610578287
LAXI01000004
Alphaproteobacteria
Roseovarius indicus [LAXI]
95875
95786
-
Ser
CGA
[ENA]
¡û
>W1610578319
LAXJ01000001
Alphaproteobacteria
Roseovarius atlanticus [LAXJ]
15273
15184
-
Ser
CGA
[ENA]
¡û
>W1610661094
LJSU01000009
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
112101
112012
-
Ser
CGA
[ENA]
¡û
>W1610845953
LPXO01000003
Alphaproteobacteria
Pseudoponticoccus marisrubri SJ5A-1 [LPXO]
96022
95933
-
Ser
CGA
[ENA]
¡û
>W1610983580
LWEQ01000459
Alphaproteobacteria
Sulfitobacter sp. HI0023 HI0023 [LWEQ]
13675
13764
+
Ser
CGA
[ENA]
¡û
>W1610983981
LWEX01000072
Alphaproteobacteria
Sulfitobacter sp. HI0040 HI0040 [LWEX]
3398
3309
-
Ser
CGA
[ENA]
¡û
>W1610984142
LWFA01000335
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
12955
13044
+
Ser
CGA
[ENA]
¡û
>W1610984387
LWFD01000047
Alphaproteobacteria
Sulfitobacter sp. HI0054 [LWFD]
12859
12948
+
Ser
CGA
[ENA]
¡û
>W1610986152
LWGH01000413
Alphaproteobacteria
Sulfitobacter sp. HI0129 HI0129 [LWGH]
3353
3264
-
Ser
CGA
[ENA]
¡û
>W1611013550
LXYQ01000143
Alphaproteobacteria
Roseovarius indicus [LXYQ]
12782
12871
+
Ser
CGA
[ENA]
¡û
>W1710011652
AONG01000020
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
60892
60981
+
Ser
CGA
[ENA]
¡û
>W1710015362
AQQP01000011
Alphaproteobacteria
Phaeobacter sp. 22II1-1F12B [AQQP]
86892
86981
+
Ser
CGA
[ENA]
¡û
>W1710015429
AQQR01000001
Alphaproteobacteria
Marinibacterium profundimaris [AQQR]
135571
135482
-
Ser
CGA
[ENA]
¡û
>W1710015679
AQQX01000011
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
14174
14085
-
Ser
CGA
[ENA]
¡û
>W1710083058
BDIY01000011
Alphaproteobacteria
Roseovarius sp. A-2 [BDIY]
34246
34157
-
Ser
CGA
[ENA]
¡û
>W1710514278
FNAV01000009
Alphaproteobacteria
Salipiger thiooxidans [FNAV]
221466
221555
+
Ser
CGA
[ENA]
¡û
>W1710516226
FNCL01000002
Alphaproteobacteria
Alloyangia pacifica [FNCL]
160721
160632
-
Ser
CGA
[ENA]
¡û
>W1710524231
FNIO01000002
Alphaproteobacteria
Lutimaribacter pacificus [FNIO]
324891
324802
-
Ser
CGA
[ENA]
¡û
>W1710530936
FNPF01000005
Alphaproteobacteria
Citreimonas salinaria [FNPF]
198156
198245
+
Ser
CGA
[ENA]
¡û
>W1710541184
FNYD01000001
Alphaproteobacteria
Cribrihabitans marinus [FNYD]
26535
26624
+
Ser
CGA
[ENA]
¡û
>W1710545551
FOBO01000030
Alphaproteobacteria
Roseovarius tolerans [FOBO]
1187
1098
-
Ser
CGA
[ENA]
¡û
>W1710546850
FOCM01000001
Alphaproteobacteria
Palleronia pelagia pelagius [FOCM]
837569
837658
+
Ser
CGA
[ENA]
¡û
>W1710548385
FODS01000027
Alphaproteobacteria
Salinihabitans flavidus [FODS]
17297
17386
+
Ser
CGA
[ENA]
¡û
>W1710555859
FOJU01000003
Alphaproteobacteria
Poseidonocella pacifica [FOJU]
67425
67514
+
Ser
CGA
[ENA]
¡û
>W1710558239
FOLR01000006
Alphaproteobacteria
Salipiger profundus nanhaiensis [FOLR]
244189
244278
+
Ser
CGA
[ENA]
¡û
>W1710559540
FOMS01000007
Alphaproteobacteria
Roseivivax sediminis [FOMS]
257231
257320
+
Ser
CGA
[ENA]
¡û
>W1710559846
FOMY01000001
Alphaproteobacteria
Roseovarius indicus [FOMY]
543614
543525
-
Ser
CGA
[ENA]
¡û
>W1710572907
FOXA01000009
Alphaproteobacteria
Tranquillimonas alkanivorans [FOXA]
91909
91820
-
Ser
CGA
[ENA]
¡û
>W1710576219
FOZW01000001
Alphaproteobacteria
Alloyangia pacifica [FOZW]
464515
464426
-
Ser
CGA
[ENA]
¡û
>W1710587517
FQYO01000006
Alphaproteobacteria
Wenxinia saemankumensis [FQYO]
166253
166342
+
Ser
CGA
[ENA]
¡û
>W1710588007
FQZA01000001
Alphaproteobacteria
Palleronia salina salinus [FQZA]
430057
430146
+
Ser
CGA
[ENA]
¡û
>W1710589255
FQZZ01000005
Alphaproteobacteria
Lutimaribacter pacificus [FQZZ]
38115
38026
-
Ser
CGA
[ENA]
¡û
>W1710599120
FTOM01000001
Alphaproteobacteria
Phaeovulum vinaykumarii [FTOM]
694165
694076
-
Ser
CGA
[ENA]
¡û
>W1710599337
FTOQ01000007
Alphaproteobacteria
Roseivivax lentus [FTOQ]
2065
1976
-
Ser
CGA
[ENA]
¡û
>W1710697160
LAXI01000004
Alphaproteobacteria
Roseovarius indicus [LAXI]
95875
95786
-
Ser
CGA
[ENA]
¡û
>W1710697192
LAXJ01000001
Alphaproteobacteria
Roseovarius atlanticus [LAXJ]
15273
15184
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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