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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462856 (83 seq.)
>w021629
AAVU01000018
Cyanobacteriota
Lyngbya sp. PCC 8106 [AAVU]
82999
83076
+
Ala
TGC
[ENA]
¡û
>W141004287
AFXD01000008
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
92957
92884
-
Ala
TGC
[ENA]
¡û
>W141004312
AFXD01000058
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
3296
3369
+
Ala
TGC
[ENA]
¡û
>W141091970
AUZM01000293
Cyanobacteriota
Lyngbya aestuarii BL J [AUZM]
410
337
-
Ala
TGC
[ENA]
¡û
>W141240118
CAFN01000042
Cyanobacteriota
Limnospira indica PCC 8005 [CAFN]
16862
16789
-
Ala
TGC
[ENA]
¡û
>C181169665
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
3361163
3361236
+
Ala
TGC
-
¡û
>C181169678
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
4909189
4909116
-
Ala
TGC
-
¡û
>W09113162
ABYK01000016
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
31015
31088
+
Ala
TGC
[ENA]
¡û
>W1810185567
PKGD01000034
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
2597
2670
+
Ala
TGC
[ENA]
¡û
>W1810185581
PKGD01000330
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
5421
5348
-
Ala
TGC
[ENA]
¡û
>W10111334
ADDH01000052
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
2170
2097
-
Ala
TGC
[ENA]
¡û
>W11114277
ADDH01000052
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
2170
2097
-
Ala
TGC
[ENA]
¡û
>W1511582906
LATL02000182
Cyanobacteriota
Limnoraphis robusta CS-951 [LATL]
359
286
-
Ala
TGC
[ENA]
¡û
>W1511585682
LAYT01000292
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
7400
7327
-
Ala
TGC
[ENA]
¡û
>C161049408
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
3361269
3361196
-
Ala
TGC
-
¡û
>C161049413
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
2462705
2462632
-
Ala
TGC
-
¡û
>C161103140
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
811158
811231
+
Ala
TGC
-
¡û
>C161103169
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
2304995
2304922
-
Ala
TGC
-
¡û
>ENV000582
AF550093
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000584
AF550094
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000586
AF550095
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000588
AF550096
Environmental sample from ENV division of INSDC
224
301
+
Ala
TGC
[ENA]
>ENV000590
AF550097
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000594
AF550099
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000597
AF550101
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000599
AF550102
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000601
AF550103
Environmental sample from ENV division of INSDC
636
713
+
Ala
TGC
[ENA]
>ENV000603
AF550104
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000605
AF550105
Environmental sample from ENV division of INSDC
637
714
+
Ala
TGC
[ENA]
>ENV000609
AF550107
Environmental sample from ENV division of INSDC
637
714
+
Ala
TGC
[ENA]
>ENV000611
AF550108
Environmental sample from ENV division of INSDC
637
714
+
Ala
TGC
[ENA]
>ENV000613
AF550109
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000615
AF550110
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000617
AF550111
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000619
AF550112
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000621
AF550113
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000623
AF550114
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000625
AF550115
Environmental sample from ENV division of INSDC
637
714
+
Ala
TGC
[ENA]
>ENV000627
AF550116
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000629
AF550117
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000631
AF550118
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000633
AF550119
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000635
AF550120
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000637
AF550121
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000639
AF550122
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000641
AF550123
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000643
AF550124
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000645
AF550125
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV000649
AF550127
Environmental sample from ENV division of INSDC
638
715
+
Ala
TGC
[ENA]
>ENV004298
DQ979030
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004300
DQ979031
Environmental sample from ENV division of INSDC
665
742
+
Ala
TGC
[ENA]
>ENV004643
DQ979204
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004645
DQ979205
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004647
DQ979206
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004649
DQ979207
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004651
DQ979208
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004653
DQ979209
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004655
DQ979210
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004657
DQ979211
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004659
DQ979212
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004661
DQ979213
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004663
DQ979214
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004665
DQ979215
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004667
DQ979216
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004669
DQ979217
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004671
DQ979218
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004673
DQ979219
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004675
DQ979220
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004677
DQ979221
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004679
DQ979222
Environmental sample from ENV division of INSDC
940
1017
+
Ala
TGC
[ENA]
>ENV004680
DQ979223
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004682
DQ979224
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004684
DQ979225
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004686
DQ979226
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004688
DQ979227
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004778
DQ979272
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004780
DQ979273
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004782
DQ979274
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004806
DQ979286
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004812
DQ979289
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004814
DQ979290
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004816
DQ979291
Environmental sample from ENV division of INSDC
941
1018
+
Ala
TGC
[ENA]
>ENV004818
DQ979292
Environmental sample from ENV division of INSDC
922
999
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK