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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462936 (88 seq.)
>W1711185380
LWNI01000047
Betaproteobacteria
Neisseria sp. HMSC31F04 [LWNI]
10075
10150
+
Thr
TGT
[ENA]
¡û
>W1711712017
MTBL01000014
Betaproteobacteria
Neisseria canis [MTBL]
54583
54508
-
Thr
TGT
[ENA]
¡û
>C171065587
CP017668
Betaproteobacteria
Jeongeupia sp. USM3 [CP017668]
3641424
3641349
-
Thr
TGT
-
¡û
>W131215543
ATVC01000025
Betaproteobacteria
Aquaspirillum serpens DSM 68 [ATVC]
24686
24761
+
Thr
TGT
[ENA]
¡û
>WENV180006021
FLRX01092973
[FLRX] metagenome; saliva
39
114
+
Thr
TGT
[ENA]
¢þ
>WENV180285346
OBID01347269
[OBID] metagenome; sludge
302
227
-
Thr
TGT
[ENA]
¢þ
>W141042677
AMER01000166
Betaproteobacteria
Neisseria sp. oral taxon 020 oral taxon 020 str. F0370 [AMER]
7410
7485
+
Thr
TGT
[ENA]
¡û
>WENV180722032
ODGL01057298
[ODGL] human metagenome; G_DNA_Subgingival plaque
19
94
+
Thr
TGT
[ENA]
¢þ
>WENV180727350
ODGU01004492
[ODGU] human metagenome; G_DNA_Supragingival plaque
1006
1081
+
Thr
TGT
[ENA]
¢þ
>WENV180732016
ODGW01070501
[ODGW] human metagenome; G_DNA_Supragingival plaque
149
74
-
Thr
TGT
[ENA]
¢þ
>WENV180736143
ODHB01006416
[ODHB] human metagenome; G_DNA_Supragingival plaque
1862
1937
+
Thr
TGT
[ENA]
¢þ
>WENV180738625
ODHD01000171
[ODHD] human metagenome; G_DNA_Supragingival plaque
57018
56943
-
Thr
TGT
[ENA]
¢þ
>WENV180751967
ODHS01282920
[ODHS] human metagenome; G_DNA_Supragingival plaque
77
2
-
Thr
TGT
[ENA]
¢þ
>WENV180796086
ODJB01001277
[ODJB] human metagenome; G_DNA_Supragingival plaque
9573
9648
+
Thr
TGT
[ENA]
¢þ
>WENV180801051
ODJD01006256
[ODJD] human metagenome; G_DNA_Supragingival plaque
1308
1233
-
Thr
TGT
[ENA]
¢þ
>WENV180804680
ODJG01009010
[ODJG] human metagenome; G_DNA_Supragingival plaque
144
69
-
Thr
TGT
[ENA]
¢þ
>WENV180814330
ODJO01013516
[ODJO] human metagenome; G_DNA_Supragingival plaque
77
2
-
Thr
TGT
[ENA]
¢þ
>WENV180824336
ODJX01003689
[ODJX] human metagenome; G_DNA_Supragingival plaque
1175
1100
-
Thr
TGT
[ENA]
¢þ
>WENV180833006
ODKC01010654
[ODKC] human metagenome; G_DNA_Supragingival plaque
77
2
-
Thr
TGT
[ENA]
¢þ
>WENV180833865
ODKD01000549
[ODKD] human metagenome; G_DNA_Supragingival plaque
11207
11282
+
Thr
TGT
[ENA]
¢þ
>WENV180845605
ODKT01001116
[ODKT] human metagenome; G_DNA_Supragingival plaque
5383
5308
-
Thr
TGT
[ENA]
¢þ
>WENV180860059
ODLD01014666
[ODLD] human metagenome; G_DNA_Supragingival plaque
1879
1954
+
Thr
TGT
[ENA]
¢þ
>WENV180888744
ODMN01003112
[ODMN] human metagenome; G_DNA_Supragingival plaque
3558
3483
-
Thr
TGT
[ENA]
¢þ
>WENV180922015
ODTJ01001013
[ODTJ] human metagenome; G_DNA_Supragingival plaque
256
181
-
Thr
TGT
[ENA]
¢þ
>WENV180922737
ODTJ01009672
[ODTJ] human metagenome; G_DNA_Supragingival plaque
1156
1081
-
Thr
TGT
[ENA]
¢þ
>WENV180928096
ODTM01014792
[ODTM] human metagenome; G_DNA_Supragingival plaque
1871
1946
+
Thr
TGT
[ENA]
¢þ
>WENV180933432
ODTR01000160
[ODTR] human metagenome; G_DNA_Supragingival plaque
35458
35533
+
Thr
TGT
[ENA]
¢þ
>WENV180934880
ODTS01007252
[ODTS] human metagenome; G_DNA_Subgingival plaque
668
593
-
Thr
TGT
[ENA]
¢þ
>WENV180939115
ODTX01015634
[ODTX] human metagenome; G_DNA_Supragingival plaque
77
2
-
Thr
TGT
[ENA]
¢þ
>WENV180944173
ODUC01009620
[ODUC] human metagenome; G_DNA_Supragingival plaque
1359
1284
-
Thr
TGT
[ENA]
¢þ
>WENV180958233
ODUL01001393
[ODUL] human metagenome; G_DNA_Supragingival plaque
6667
6592
-
Thr
TGT
[ENA]
¢þ
>WENV180972757
ODUW01000134
[ODUW] human metagenome; G_DNA_Supragingival plaque
40209
40284
+
Thr
TGT
[ENA]
¢þ
>WENV180981166
ODVE01008828
[ODVE] human metagenome; G_DNA_Supragingival plaque
2044
2119
+
Thr
TGT
[ENA]
¢þ
>WENV180983552
ODVF01019067
[ODVF] human metagenome; G_DNA_Supragingival plaque
123
48
-
Thr
TGT
[ENA]
¢þ
>WENV180986572
ODVK01000098
[ODVK] human metagenome; G_DNA_Supragingival plaque
44744
44669
-
Thr
TGT
[ENA]
¢þ
>WENV181003110
ODVX01004981
[ODVX] human metagenome; G_DNA_Supragingival plaque
871
796
-
Thr
TGT
[ENA]
¢þ
>WENV181008675
ODWE01010730
[ODWE] human metagenome; G_DNA_Supragingival plaque
2372
2447
+
Thr
TGT
[ENA]
¢þ
>WENV181019985
ODWU01032657
[ODWU] human metagenome; G_DNA_Supragingival plaque
77
2
-
Thr
TGT
[ENA]
¢þ
>WENV181029849
ODXF01006413
[ODXF] human metagenome; G_DNA_Supragingival plaque
475
400
-
Thr
TGT
[ENA]
¢þ
>WENV181067683
ODZI01038838
[ODZI] human metagenome; G_DNA_Supragingival plaque
506
431
-
Thr
TGT
[ENA]
¢þ
>WENV181070243
OEAE01000504
[OEAE] human metagenome; G_DNA_Supragingival plaque
7340
7265
-
Thr
TGT
[ENA]
¢þ
>WENV181082402
OEAT01012355
[OEAT] human metagenome; G_DNA_Supragingival plaque
39
114
+
Thr
TGT
[ENA]
¢þ
>WENV181083780
OEAV01023320
[OEAV] human metagenome; G_DNA_Supragingival plaque
752
677
-
Thr
TGT
[ENA]
¢þ
>WENV181090655
OEBC01002070
[OEBC] human metagenome; G_DNA_Supragingival plaque
3878
3803
-
Thr
TGT
[ENA]
¢þ
>WENV181107494
OEEI01009211
[OEEI] human metagenome; G_DNA_Supragingival plaque
2538
2463
-
Thr
TGT
[ENA]
¢þ
>WENV181123919
OEFQ01002546
[OEFQ] human metagenome; G_DNA_Supragingival plaque
677
602
-
Thr
TGT
[ENA]
¢þ
>WENV181143016
OEHM01000047
[OEHM] human metagenome; G_DNA_Supragingival plaque
11656
11581
-
Thr
TGT
[ENA]
¢þ
>WENV181146502
OEHQ01007348
[OEHQ] human metagenome; G_DNA_Supragingival plaque
782
707
-
Thr
TGT
[ENA]
¢þ
>WENV181152144
OEIA01000187
[OEIA] human metagenome; G_DNA_Supragingival plaque
28617
28692
+
Thr
TGT
[ENA]
¢þ
>WENV181158725
OEIH01007922
[OEIH] human metagenome; G_DNA_Supragingival plaque
1871
1946
+
Thr
TGT
[ENA]
¢þ
>WENV181179187
OEJT01001819
[OEJT] human metagenome; G_DNA_Supragingival plaque
2360
2435
+
Thr
TGT
[ENA]
¢þ
>WENV181180890
OEJU01001672
[OEJU] human metagenome; G_DNA_Supragingival plaque
7038
6963
-
Thr
TGT
[ENA]
¢þ
>WENV181181998
OEJV01001307
[OEJV] human metagenome; G_DNA_Supragingival plaque
2457
2532
+
Thr
TGT
[ENA]
¢þ
>WENV181841400
OGVR01022806
[OGVR] freshwater metagenome; freshwater
485
560
+
Thr
TGT
[ENA]
¢þ
>WENV181844197
OGVV01020075
[OGVV] freshwater metagenome; freshwater
531
606
+
Thr
TGT
[ENA]
¢þ
>WENV183508452
OMHD01003217
[OMHD] human oral metagenome; human oral
127
52
-
Thr
TGT
[ENA]
¢þ
>WENV183509409
OMHI01001236
[OMHI] human oral metagenome; human oral
1160
1085
-
Thr
TGT
[ENA]
¢þ
>C181067618
CP022527
Betaproteobacteria
Neisseria sp. KEM232 [CP022527]
1657023
1657098
+
Thr
TGT
-
¡û
>C181198263
CP031252
Betaproteobacteria
Neisseria elongata M15911 [CP031252]
822035
821960
-
Thr
TGT
-
¡û
>C181198407
CP031255
Betaproteobacteria
Neisseria elongata M15910 [CP031255]
1078163
1078238
+
Thr
TGT
-
¡û
>W09120382
ACEN01000047
Betaproteobacteria
Neisseria flavescens NRL30031/H210 [ACEN]
65
140
+
Thr
TGT
[ENA]
¡û
>C181213196
LS483435
Betaproteobacteria
Neisseria elongata subsp. glycolytica NCTC11050 [LS483435]
2106295
2106220
-
Thr
TGT
-
¡û
>C191204168
LR134287
Betaproteobacteria
Neisseria animalis NCTC10212 [LR134287]
1210158
1210083
-
Thr
TGT
-
¡û
>C191204169
LR134287
Betaproteobacteria
Neisseria animalis NCTC10212 [LR134287]
1210051
1209976
-
Thr
TGT
-
¡û
>C191205922
LR134313
Betaproteobacteria
Neisseria canis NCTC10296 [LR134313]
1341160
1341085
-
Thr
TGT
-
¡û
>W1810227377
POXH01000010
Betaproteobacteria
Neisseria elongata C2010010207 [POXH]
61095
61020
-
Thr
TGT
[ENA]
¡û
>W1810227474
POXJ01000008
Betaproteobacteria
Neisseria elongata C2011003085 [POXJ]
47367
47442
+
Thr
TGT
[ENA]
¡û
>W1810227940
POXS01000012
Betaproteobacteria
Neisseria elongata C2013010062 [POXS]
19538
19463
-
Thr
TGT
[ENA]
¡û
>W1810228093
POXV01000007
Betaproteobacteria
Neisseria elongata C2013018262 [POXV]
48711
48786
+
Thr
TGT
[ENA]
¡û
>W1810228262
POXY01000007
Betaproteobacteria
Neisseria elongata C2014003241 [POXY]
59929
59854
-
Thr
TGT
[ENA]
¡û
>C151033127
CP007726
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [CP007726]
1679687
1679612
-
Thr
TGT
[Ensembl]
¡û
>W10109808
ADBF01000227
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
40543
40468
-
Thr
TGT
[ENA]
¡û
>W11112195
ADBF01000227
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
40543
40468
-
Thr
TGT
[ENA]
¡û
>W1511439637
JUOC01000049
Betaproteobacteria
Neisseria bacilliformis 914_NLAC [JUOC]
9156
9231
+
Thr
TGT
[ENA]
¡û
>W1511456086
JVHH01000058
Betaproteobacteria
Neisseria elongata 431_NMEN [JVHH]
34467
34392
-
Thr
TGT
[ENA]
¡û
>W1511457702
JVIM01000071
Betaproteobacteria
Neisseria elongata 404_NMEN [JVIM]
52896
52971
+
Thr
TGT
[ENA]
¡û
>W1511464682
JVQC01000052
Betaproteobacteria
Neisseria bacilliformis 203_NMEN [JVQC]
28333
28408
+
Thr
TGT
[ENA]
¡û
>W1511469675
JVVT01000008
Betaproteobacteria
Neisseria elongata 1279_NMEN [JVVT]
121800
121875
+
Thr
TGT
[ENA]
¡û
>W11156211
AFAY01000035
Betaproteobacteria
Neisseria bacilliformis ATCC BAA-1200 [AFAY]
29094
29169
+
Thr
TGT
[ENA]
¡û
>W11177490
AGAY01000064
Betaproteobacteria
Neisseria shayeganii 871 [AGAY]
16846
16921
+
Thr
TGT
[ENA]
¡û
>W11177514
AGAZ01000039
Betaproteobacteria
Neisseria wadsworthii 9715 [AGAZ]
1209
1134
-
Thr
TGT
[ENA]
¡û
>W1610074191
BCWL01000291
Betaproteobacteria
Bergeriella denitrificans NBRC 102155 [BCWL]
263
188
-
Thr
TGT
[ENA]
¡û
>W1610074192
BCWL01000291
Betaproteobacteria
Bergeriella denitrificans NBRC 102155 [BCWL]
157
82
-
Thr
TGT
[ENA]
¡û
>W1610617739
LGYH01000013
Betaproteobacteria
Neisseria sp. 83E34 [LGYH]
13380
13305
-
Thr
TGT
[ENA]
¡û
>W1710071309
BCWL01000291
Betaproteobacteria
Bergeriella denitrificans NBRC 102155 [BCWL]
263
188
-
Thr
TGT
[ENA]
¡û
>W1710071310
BCWL01000291
Betaproteobacteria
Bergeriella denitrificans NBRC 102155 [BCWL]
157
82
-
Thr
TGT
[ENA]
¡û
>W1710563501
FOPS01000005
Betaproteobacteria
Neisseria elongata subsp. elongata [FOPS]
57981
57906
-
Thr
TGT
[ENA]
¡û
>W1710743601
LGYH01000013
Betaproteobacteria
Neisseria sp. 83E34 [LGYH]
13380
13305
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK