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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463019 (39 seq.)
>W1710923809
LOCK01000017
Bacillota
Desulfitobacterium hafniense [LOCK]
193608
193533
-
Glu
TTC
[ENA]
¡û
>W1711342424
MCHF01000002
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
169141
169216
+
Glu
TTC
[ENA]
¡û
>W1711342469
MCHF01000056
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
7527
7452
-
Glu
TTC
[ENA]
¡û
>W131162529
AQYY01000008
Bacillota
Dehalobacter sp. FTH1 [AQYY]
1043
1118
+
Glu
TTC
[ENA]
¡û
>W131162541
AQYY01000019
Bacillota
Dehalobacter sp. FTH1 [AQYY]
26220
26145
-
Glu
TTC
[ENA]
¡û
>W131162721
AQZD01000009
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
244221
244296
+
Glu
TTC
[ENA]
¡û
>W131162841
AQZF01000024
Bacillota
Desulfitobacterium sp. PCE1 [AQZF]
283571
283496
-
Glu
TTC
[ENA]
¡û
>W131164697
ARAZ01000035
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
27924
27999
+
Glu
TTC
[ENA]
¡û
>C007817
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
3445612
3445537
-
Glu
TTC
[Ensembl]
¡û
>WENV180345910
OBLN01010541
[OBLN] sediment metagenome; sediment
1935
2010
+
Glu
TTC
[ENA]
¢þ
>w002143
AAAW04000001
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
1587657
1587580
-
Glu
TTC
[ENA]
¡û
>W141088288
AUUR01000120
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
18268
18193
-
Glu
TTC
[ENA]
¡û
>W141088317
AUUR01000179
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
74170
74095
-
Glu
TTC
[ENA]
¡û
>W141246544
CANE01000002
Bacillota
Dehalobacter restrictus E1 [CANE]
141336
141411
+
Glu
TTC
[ENA]
¡û
>W141246570
CANE01000031
Bacillota
Dehalobacter restrictus E1 [CANE]
13982
14057
+
Glu
TTC
[ENA]
¡û
>W141246652
CANF01002296
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
6247
6172
-
Glu
TTC
[ENA]
¡û
>W141246673
CANF01002314
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
141500
141575
+
Glu
TTC
[ENA]
¡û
>WENV170659038
JXWO01000123
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
30909
30984
+
Glu
TTC
[ENA]
¢þ
>C09104027
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
4459773
4459698
-
Glu
TTC
[Ensembl]
¡û
>C141011738
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
1152817
1152892
+
Glu
TTC
[Ensembl]
¡û
>C141011757
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
2919762
2919687
-
Glu
TTC
[Ensembl]
¡û
>W1910647139
LXPC01000002
Bacillota
Dehalobacter sp. MCB1 [LXPC]
26189
26114
-
Glu
TTC
[ENA]
¡û
>W1910647163
LXPC01000012
Bacillota
Dehalobacter sp. MCB1 [LXPC]
34965
35040
+
Glu
TTC
[ENA]
¡û
>W1911608702
PNXX01000009
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
308583
308508
-
Glu
TTC
[ENA]
¡û
>W1911608706
PNXX01000013
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
22460
22535
+
Glu
TTC
[ENA]
¡û
>W1911613529
POSF01000002
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
99254
99329
+
Glu
TTC
[ENA]
¡û
>W1911613536
POSF01000006
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
25940
25865
-
Glu
TTC
[ENA]
¡û
>C11120642
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
2270954
2270879
-
Glu
TTC
[Ensembl]
¡û
>C121011469
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
3573046
3572971
-
Glu
TTC
[Ensembl]
¡û
>W121007289
AFZX01000131
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
96248
96173
-
Glu
TTC
[ENA]
¡û
>W121010347
AGJE01000006
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
89511
89436
-
Glu
TTC
[ENA]
¡û
>W121010514
AGJH01000001
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
89657
89582
-
Glu
TTC
[ENA]
¡û
>C131003279
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
2975117
2975042
-
Glu
TTC
[Ensembl]
¡û
>C131008519
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
3045727
3045652
-
Glu
TTC
[Ensembl]
¡û
>C131008531
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2085867
2085792
-
Glu
TTC
[Ensembl]
¡û
>C131008570
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
3067822
3067747
-
Glu
TTC
[Ensembl]
¡û
>C131008582
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2115655
2115580
-
Glu
TTC
[Ensembl]
¡û
>W1610781410
LOCK01000017
Bacillota
Desulfitobacterium hafniense [LOCK]
193608
193533
-
Glu
TTC
[ENA]
¡û
>W1710593521
FRDN01000011
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
42818
42893
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK