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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463085 (133 seq.)
>W1710786632
LJJB01000007
Bacillota
Brevibacillus choshinensis [LJJB]
1329939
1330014
+
Thr
TGT
[ENA]
¡û
>W1710786644
LJJB01000010
Bacillota
Brevibacillus choshinensis [LJJB]
1829697
1829772
+
Thr
TGT
[ENA]
¡û
>W1710786682
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
406
481
+
Thr
TGT
[ENA]
¡û
>W1710786710
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
1660430
1660355
-
Thr
TGT
[ENA]
¡û
>W1711009627
LQQV01000013
Bacillota
Brevibacillus parabrevis [LQQV]
269820
269895
+
Thr
TGT
[ENA]
¡û
>W1711009632
LQQV01000028
Bacillota
Brevibacillus parabrevis [LQQV]
578
653
+
Thr
TGT
[ENA]
¡û
>W1711009682
LQQV01000079
Bacillota
Brevibacillus parabrevis [LQQV]
13091
13166
+
Thr
TGT
[ENA]
¡û
>W1711009699
LQQV01000126
Bacillota
Brevibacillus parabrevis [LQQV]
234257
234332
+
Thr
TGT
[ENA]
¡û
>W1711009727
LQQV01000133
Bacillota
Brevibacillus parabrevis [LQQV]
971
1046
+
Thr
TGT
[ENA]
¡û
>W1711168631
LVYG01000001
Bacillota
Brevibacillus brevis [LVYG]
1156530
1156455
-
Thr
TGT
[ENA]
¡û
>W1711168653
LVYG01000013
Bacillota
Brevibacillus brevis [LVYG]
804
879
+
Thr
TGT
[ENA]
¡û
>W1711168676
LVYG01000024
Bacillota
Brevibacillus brevis [LVYG]
223
148
-
Thr
TGT
[ENA]
¡û
>W1711168698
LVYG01000040
Bacillota
Brevibacillus brevis [LVYG]
765
840
+
Thr
TGT
[ENA]
¡û
>W131006778
AHKL01000029
Bacillota
Brevibacillus brevis FJAT-0809-GLX [AHKL]
153
78
-
Thr
TGT
[ENA]
¡û
>W131006788
AHKL01000035
Bacillota
Brevibacillus brevis FJAT-0809-GLX [AHKL]
154
229
+
Thr
TGT
[ENA]
¡û
>W131006800
AHKL01000038
Bacillota
Brevibacillus brevis FJAT-0809-GLX [AHKL]
13741
13816
+
Thr
TGT
[ENA]
¡û
>W131006834
AHKL01000063
Bacillota
Brevibacillus brevis FJAT-0809-GLX [AHKL]
745
820
+
Thr
TGT
[ENA]
¡û
>W131086521
AOBR01000279
Bacillota
Brevibacillus agri BAB-2500 [AOBR]
653
728
+
Thr
TGT
[ENA]
¡û
>W131086536
AOBR01000360
Bacillota
Brevibacillus agri BAB-2500 [AOBR]
301
376
+
Thr
TGT
[ENA]
¡û
>W1711799967
MXAR01000002
Bacillota
Brevibacillus brevis [MXAR]
5433
5508
+
Thr
TGT
[ENA]
¡û
>W1711800013
MXAR01000023
Bacillota
Brevibacillus brevis [MXAR]
3144
3219
+
Thr
TGT
[ENA]
¡û
>W1711800032
MXAR01000026
Bacillota
Brevibacillus brevis [MXAR]
30636
30711
+
Thr
TGT
[ENA]
¡û
>W1711800064
MXAR01000043
Bacillota
Brevibacillus brevis [MXAR]
16071
16146
+
Thr
TGT
[ENA]
¡û
>W141026700
AKYF01000001
Bacillota
Brevibacillus brevis X23 [AKYF]
295879
295954
+
Thr
TGT
[ENA]
¡û
>W141026736
AKYF01000010
Bacillota
Brevibacillus brevis X23 [AKYF]
501192
501267
+
Thr
TGT
[ENA]
¡û
>W141026745
AKYF01000012
Bacillota
Brevibacillus brevis X23 [AKYF]
106
181
+
Thr
TGT
[ENA]
¡û
>W141026763
AKYF01000017
Bacillota
Brevibacillus brevis X23 [AKYF]
224791
224716
-
Thr
TGT
[ENA]
¡û
>W141026779
AKYF01000021
Bacillota
Brevibacillus brevis X23 [AKYF]
180
255
+
Thr
TGT
[ENA]
¡û
>W141093488
AVBJ01000025
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
104766
104691
-
Thr
TGT
[ENA]
¡û
>W141093507
AVBJ01000034
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
32450
32525
+
Thr
TGT
[ENA]
¡û
>W141093553
AVBJ01000077
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
98140
98065
-
Thr
TGT
[ENA]
¡û
>W141291579
JATL01000058
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
675
750
+
Thr
TGT
[ENA]
¡û
>W141291622
JATL01000136
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
430
355
-
Thr
TGT
[ENA]
¡û
>W141291634
JATL01000138
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
457
532
+
Thr
TGT
[ENA]
¡û
>WENV170580543
FUFK010047422
[FUFK] metagenome; unknown
1714
1639
-
Thr
TGT
[ENA]
¢þ
>WENV170582566
FUFK010090775
[FUFK] metagenome; unknown
587
512
-
Thr
TGT
[ENA]
¢þ
>WENV170592546
FUFK010808566
[FUFK] metagenome; unknown
817
742
-
Thr
TGT
[ENA]
¢þ
>WENV170593075
FUFK010840849
[FUFK] metagenome; unknown
420
495
+
Thr
TGT
[ENA]
¢þ
>WENV170594289
FUFK011264587
[FUFK] metagenome; unknown
211
136
-
Thr
TGT
[ENA]
¢þ
>C181030590
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
1653593
1653668
+
Thr
TGT
-
¡û
>C181030600
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
5474263
5474338
+
Thr
TGT
-
¡û
>C181030655
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
6034261
6034336
+
Thr
TGT
-
¡û
>C181030674
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
3584062
3583987
-
Thr
TGT
-
¡û
>C181081982
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
7243
7318
+
Thr
TGT
-
¡û
>C181082037
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
564226
564301
+
Thr
TGT
-
¡û
>C181082066
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
2814100
2814175
+
Thr
TGT
-
¡û
>C181082082
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
4548996
4548921
-
Thr
TGT
-
¡û
>C181188371
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
7366
7441
+
Thr
TGT
-
¡û
>C181188426
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
552672
552747
+
Thr
TGT
-
¡û
>C181188456
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
2680256
2680331
+
Thr
TGT
-
¡û
>C181188472
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
4365114
4365039
-
Thr
TGT
-
¡û
>C191041870
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
2099789
2099864
+
Thr
TGT
-
¡û
>C191041903
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
5292649
5292574
-
Thr
TGT
-
¡û
>C191041946
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
539267
539192
-
Thr
TGT
-
¡û
>C191207530
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
7248
7323
+
Thr
TGT
-
¡û
>C191207573
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
1873071
1873146
+
Thr
TGT
-
¡û
>C191207615
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
5687299
5687224
-
Thr
TGT
-
¡û
>C191207645
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
3507569
3507494
-
Thr
TGT
-
¡û
>W1910181755
BJMH01000036
Bacillota
Brevibacillus parabrevis NBRC 12334 [BJMH]
48599
48674
+
Thr
TGT
[ENA]
¡û
>W1910183939
BJOD01000168
Bacillota
Brevibacillus agri NBRC 15538 [BJOD]
309
234
-
Thr
TGT
[ENA]
¡û
>W1910183945
BJOE01000016
Bacillota
Brevibacillus centrosporus NBRC 15540 [BJOE]
177
102
-
Thr
TGT
[ENA]
¡û
>W1910183968
BJOE01000075
Bacillota
Brevibacillus centrosporus NBRC 15540 [BJOE]
218
143
-
Thr
TGT
[ENA]
¡û
>C09101388
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
7707
7782
+
Thr
TGT
[Ensembl]
¡û
>C09101443
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
546121
546196
+
Thr
TGT
[Ensembl]
¡û
>C09101473
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
2649091
2649166
+
Thr
TGT
[Ensembl]
¡û
>C09101489
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
4340185
4340110
-
Thr
TGT
[Ensembl]
¡û
>W1810001140
BEXF01000002
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
490997
491072
+
Thr
TGT
[ENA]
¡û
>W1810001179
BEXF01000014
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
1155
1230
+
Thr
TGT
[ENA]
¡û
>W1810001242
BEXF01000104
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
406
331
-
Thr
TGT
[ENA]
¡û
>W1810389840
PXXZ01000004
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
1001
1076
+
Thr
TGT
[ENA]
¡û
>W1810389855
PXXZ01000006
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
480621
480696
+
Thr
TGT
[ENA]
¡û
>W1810389862
PXXZ01000009
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
223702
223627
-
Thr
TGT
[ENA]
¡û
>W1810389906
PXXZ01000039
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
114562
114637
+
Thr
TGT
[ENA]
¡û
>W1810391239
PXZL01000001
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
565
640
+
Thr
TGT
[ENA]
¡û
>W1810391278
PXZL01000013
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
486235
486310
+
Thr
TGT
[ENA]
¡û
>W1810391289
PXZL01000014
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
19572
19497
-
Thr
TGT
[ENA]
¡û
>W1810391319
PXZL01000043
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
15576
15651
+
Thr
TGT
[ENA]
¡û
>W1810391362
PXZM01000003
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
328777
328702
-
Thr
TGT
[ENA]
¡û
>W1810391370
PXZM01000006
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
839
914
+
Thr
TGT
[ENA]
¡û
>W1810391386
PXZM01000012
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
292423
292498
+
Thr
TGT
[ENA]
¡û
>W1810391460
PXZM01000068
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
18754
18679
-
Thr
TGT
[ENA]
¡û
>W1810391484
PXZN01000016
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
823
898
+
Thr
TGT
[ENA]
¡û
>W1810391525
PXZN01000019
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
906
981
+
Thr
TGT
[ENA]
¡û
>W1810391556
PXZN01000025
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
69122
69197
+
Thr
TGT
[ENA]
¡û
>W1810391596
PXZO01000020
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
874
949
+
Thr
TGT
[ENA]
¡û
>W1810391605
PXZO01000041
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
537
612
+
Thr
TGT
[ENA]
¡û
>W1810391621
PXZO01000042
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
227410
227485
+
Thr
TGT
[ENA]
¡û
>W1810391641
PXZO01000052
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
34022
33947
-
Thr
TGT
[ENA]
¡û
>W1810787363
QRDR01000004
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
480704
480779
+
Thr
TGT
[ENA]
¡û
>W1810787376
QRDR01000007
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
1120
1195
+
Thr
TGT
[ENA]
¡û
>W1810787402
QRDR01000011
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
347
422
+
Thr
TGT
[ENA]
¡û
>W1810787433
QRDR01000018
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
114636
114711
+
Thr
TGT
[ENA]
¡û
>W1511629637
LDCN01000001
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
1166127
1166052
-
Thr
TGT
[ENA]
¡û
>W1511629662
LDCN01000002
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
485927
486002
+
Thr
TGT
[ENA]
¡û
>W1511629672
LDCN01000003
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
902709
902784
+
Thr
TGT
[ENA]
¡û
>W1511629694
LDCN01000003
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
905761
905836
+
Thr
TGT
[ENA]
¡û
>W1511629720
LDCN01000006
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
325470
325395
-
Thr
TGT
[ENA]
¡û
>W1511629735
LDCN01000006
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
322521
322446
-
Thr
TGT
[ENA]
¡û
>W1511645811
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
1064
1139
+
Thr
TGT
[ENA]
¡û
>W1511645841
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
2128350
2128425
+
Thr
TGT
[ENA]
¡û
>W1511645851
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
5898943
5899018
+
Thr
TGT
[ENA]
¡û
>W1511645894
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
3813263
3813188
-
Thr
TGT
[ENA]
¡û
>W1511699532
LGIQ01000002
Bacillota
Brevibacillus reuszeri DSM 9887 [LGIQ]
81
156
+
Thr
TGT
[ENA]
¡û
>W1511699562
LGIQ01000007
Bacillota
Brevibacillus reuszeri DSM 9887 [LGIQ]
577
652
+
Thr
TGT
[ENA]
¡û
>W1511699588
LGIQ01000009
Bacillota
Brevibacillus reuszeri DSM 9887 [LGIQ]
1549689
1549614
-
Thr
TGT
[ENA]
¡û
>W1511700073
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
425047
425122
+
Thr
TGT
[ENA]
¡û
>W1511700105
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
4647233
4647158
-
Thr
TGT
[ENA]
¡û
>W1511700158
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
4111830
4111755
-
Thr
TGT
[ENA]
¡û
>W1511700188
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
1951413
1951338
-
Thr
TGT
[ENA]
¡û
>W121085025
AKIX01000121
Bacillota
Brevibacillus sp. BC25 [AKIX]
624
699
+
Thr
TGT
[ENA]
¡û
>W121085029
AKIX01000126
Bacillota
Brevibacillus sp. BC25 [AKIX]
9601
9526
-
Thr
TGT
[ENA]
¡û
>W1610650487
LJJB01000007
Bacillota
Brevibacillus choshinensis [LJJB]
1329939
1330014
+
Thr
TGT
[ENA]
¡û
>W1610650499
LJJB01000010
Bacillota
Brevibacillus choshinensis [LJJB]
1829697
1829772
+
Thr
TGT
[ENA]
¡û
>W1610650537
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
406
481
+
Thr
TGT
[ENA]
¡û
>W1610650565
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
1660430
1660355
-
Thr
TGT
[ENA]
¡û
>W1610858147
LQQV01000013
Bacillota
Brevibacillus parabrevis [LQQV]
269820
269895
+
Thr
TGT
[ENA]
¡û
>W1610858152
LQQV01000028
Bacillota
Brevibacillus parabrevis [LQQV]
578
653
+
Thr
TGT
[ENA]
¡û
>W1610858202
LQQV01000079
Bacillota
Brevibacillus parabrevis [LQQV]
13091
13166
+
Thr
TGT
[ENA]
¡û
>W1610858219
LQQV01000126
Bacillota
Brevibacillus parabrevis [LQQV]
234257
234332
+
Thr
TGT
[ENA]
¡û
>W1610858247
LQQV01000133
Bacillota
Brevibacillus parabrevis [LQQV]
971
1046
+
Thr
TGT
[ENA]
¡û
>W1610978426
LVYG01000001
Bacillota
Brevibacillus brevis [LVYG]
1156530
1156455
-
Thr
TGT
[ENA]
¡û
>W1610978448
LVYG01000013
Bacillota
Brevibacillus brevis [LVYG]
804
879
+
Thr
TGT
[ENA]
¡û
>W1610978471
LVYG01000024
Bacillota
Brevibacillus brevis [LVYG]
223
148
-
Thr
TGT
[ENA]
¡û
>W1610978493
LVYG01000040
Bacillota
Brevibacillus brevis [LVYG]
765
840
+
Thr
TGT
[ENA]
¡û
>W1710081077
BDFB01000004
Bacillota
Brevibacillus brevis [BDFB]
1031745
1031670
-
Thr
TGT
[ENA]
¡û
>W1710081089
BDFB01000006
Bacillota
Brevibacillus brevis [BDFB]
545173
545098
-
Thr
TGT
[ENA]
¡û
>W1710081104
BDFB01000010
Bacillota
Brevibacillus brevis [BDFB]
368197
368272
+
Thr
TGT
[ENA]
¡û
>W1710081126
BDFB01000013
Bacillota
Brevibacillus brevis [BDFB]
246761
246686
-
Thr
TGT
[ENA]
¡û
>W1710566116
FORT01000003
Bacillota
Brevibacillus centrosporus OK042 [FORT]
455465
455390
-
Thr
TGT
[ENA]
¡û
>W1710566128
FORT01000004
Bacillota
Brevibacillus centrosporus OK042 [FORT]
944
1019
+
Thr
TGT
[ENA]
¡û
>W1710566162
FORT01000011
Bacillota
Brevibacillus centrosporus OK042 [FORT]
505
430
-
Thr
TGT
[ENA]
¡û
>W1710566169
FORT01000012
Bacillota
Brevibacillus centrosporus OK042 [FORT]
165667
165742
+
Thr
TGT
[ENA]
¡û
>W1710566187
FORT01000021
Bacillota
Brevibacillus centrosporus OK042 [FORT]
262
187
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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