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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46309 (47 seq.)
>W1711009510
LQQT01000003
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
123046
123135
+
Ser
GGA
[ENA]
¡û
>W1711179436
LWHQ01000038
Alphaproteobacteria
Methylobacterium platani [LWHQ]
29096
29007
-
Ser
GGA
[ENA]
¡û
>W131163757
ARAA01000018
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
478398
478309
-
Ser
GGA
[ENA]
¡û
>C171072673
CP018095
Alphaproteobacteria
Chelatococcus daeguensis TAD1 [CP018095]
3066307
3066396
+
Ser
GGA
-
¡û
>w026459
ABAY01000013
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
48515
48424
-
Ser
GGA
[ENA]
¡û
>WENV181168270
OEIU01238738
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
118
29
-
Ser
GGA
[ENA]
¢þ
>WENV181307998
OFIS01000090
[OFIS] sludge metagenome; sludge
59472
59561
+
Ser
GGA
[ENA]
¢þ
>WENV181311538
OFJB01003841
[OFJB] sludge metagenome; sludge
237
326
+
Ser
GGA
[ENA]
¢þ
>WENV181402348
OFTY01000742
[OFTY] sludge metagenome; sludge
7111
7200
+
Ser
GGA
[ENA]
¢þ
>W141151403
AXBA01000059
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
1721
1632
-
Ser
GGA
[ENA]
¡û
>W08006135
ABIP01000006
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
8414
8503
+
Ser
GGA
[ENA]
¡û
>W141241692
CAHM01000147
Alphaproteobacteria
Microvirga massiliensis JC119 [CAHM]
227348
227437
+
Ser
GGA
[ENA]
¡û
>C08006426
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
4412966
4413055
+
Ser
GGA
[Ensembl]
¡û
>WENV170962391
MRWF01014646
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1977
2066
+
Ser
GGA
[ENA]
¢þ
>WENV170964787
MRWG01043691
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
484
571
+
Ser
GGA
[ENA]
¢þ
>WENV170964788
MRWG01043697
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
88
1
-
Ser
GGA
[ENA]
¢þ
>C181180090
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
1348780
1348869
+
Ser
GGA
-
¡û
>C181180199
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
3673585
3673674
+
Ser
GGA
-
¡û
>W141712280
JMQM01000002
Alphaproteobacteria
Nitratireductor basaltis [JMQM]
126272
126361
+
Ser
GGA
[ENA]
¡û
>C09107871
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
3700101
3700012
-
Ser
GGA
[Ensembl]
¡û
>W1911708569
QOWC01000110
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
25502
25413
-
Ser
GGA
[ENA]
¡û
>W1810079880
PELK01001267
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
321
232
-
Ser
GGA
[ENA]
¡û
>W1810394335
PYBP01000009
Alphaproteobacteria
Nitratireductor sp. StC3 [PYBP]
145379
145468
+
Ser
GGA
[ENA]
¡û
>W1810658583
QJJK01000004
Alphaproteobacteria
Chelatococcus asaccharovorans DSM 6462 [QJJK]
495927
496016
+
Ser
GGA
[ENA]
¡û
>C151094729
CP012398
Alphaproteobacteria
Chelatococcus sp. CO-6 [CP012398]
765699
765788
+
Ser
GGA
-
¡û
>W1510081353
CDSD01000022
Alphaproteobacteria
Microvirga massiliensis JC119 [CDSD]
315
226
-
Ser
GGA
[ENA]
¡û
>W1510741102
CYHC01000001
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
618009
618098
+
Ser
GGA
[ENA]
¡û
>W1511400916
JTHF01000320
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
714
803
+
Ser
GGA
[ENA]
¡û
>W1511400981
JTHG01000419
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
2997
3086
+
Ser
GGA
[ENA]
¡û
>W1511507901
JXOD01000180
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
734
823
+
Ser
GGA
[ENA]
¡û
>W1511563245
LABX01000128
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
7354
7443
+
Ser
GGA
[ENA]
¡û
>W1511563340
LABZ01000006
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
40314
40225
-
Ser
GGA
[ENA]
¡û
>C161001166
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
5088546
5088635
+
Ser
GGA
[Ensembl]
¡û
>W121110807
ALIQ01000225
Alphaproteobacteria
Chelatococcus sp. GW1 [ALIQ]
20934
20845
-
Ser
GGA
[ENA]
¡û
>W1610590430
LDRL01000065
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
10901
10990
+
Ser
GGA
[ENA]
¡û
>W1610590505
LDRM01000109
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
4446
4357
-
Ser
GGA
[ENA]
¡û
>W1610590593
LDRN01000213
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
12399
12310
-
Ser
GGA
[ENA]
¡û
>W1610631736
LIOL01000001
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
618009
618098
+
Ser
GGA
[ENA]
¡û
>W1610858030
LQQT01000003
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
123046
123135
+
Ser
GGA
[ENA]
¡û
>W1610987337
LWHQ01000038
Alphaproteobacteria
Methylobacterium platani [LWHQ]
29096
29007
-
Ser
GGA
[ENA]
¡û
>W1710548846
FOEB01000024
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
120351
120440
+
Ser
GGA
[ENA]
¡û
>W1710560683
FONO01000015
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
135525
135614
+
Ser
GGA
[ENA]
¡û
>W1710579039
FPCB01000007
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
183576
183487
-
Ser
GGA
[ENA]
¡û
>W1710709710
LDRL01000065
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
10901
10990
+
Ser
GGA
[ENA]
¡û
>W1710709785
LDRM01000109
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
4446
4357
-
Ser
GGA
[ENA]
¡û
>W1710709873
LDRN01000213
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
12399
12310
-
Ser
GGA
[ENA]
¡û
>W1710764621
LIOL01000001
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
618009
618098
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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