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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463094 (54 seq.)
>W1710786692
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
97045
97120
+
Val
GAC
[ENA]
¡û
>W1710876766
LMPN01000001
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
89440
89515
+
Val
GAC
[ENA]
¡û
>W1711009669
LQQV01000066
Bacillota
Brevibacillus parabrevis [LQQV]
77489
77564
+
Val
GAC
[ENA]
¡û
>W1711168679
LVYG01000025
Bacillota
Brevibacillus brevis [LVYG]
23685
23610
-
Val
GAC
[ENA]
¡û
>W1711208496
LXGJ01000099
Bacillota
Brevibacillus sp. WF146 [LXGJ]
3249
3174
-
Val
GAC
[ENA]
¡û
>W1711800023
MXAR01000023
Bacillota
Brevibacillus brevis [MXAR]
94063
94138
+
Val
GAC
[ENA]
¡û
>W131006844
AHKL01000063
Bacillota
Brevibacillus brevis FJAT-0809-GLX [AHKL]
188225
188300
+
Val
GAC
[ENA]
¡û
>W131086464
AOBR01000017
Bacillota
Brevibacillus agri BAB-2500 [AOBR]
74865
74940
+
Val
GAC
[ENA]
¡û
>W131104066
APBN01000001
Bacillota
Brevibacillus borstelensis AK1 [APBN]
813718
813643
-
Val
GAC
[ENA]
¡û
>W141026773
AKYF01000017
Bacillota
Brevibacillus brevis X23 [AKYF]
133320
133245
-
Val
GAC
[ENA]
¡û
>W141080410
ATNE01000010
Bacillota
Brevibacillus thermoruber 423 [ATNE]
64863
64938
+
Val
GAC
[ENA]
¡û
>W141093498
AVBJ01000025
Bacillota
Bacillus sp. NSP2.1 [AVBJ]
8924
8849
-
Val
GAC
[ENA]
¡û
>W141185500
AYJU01000017
Bacillota
Brevibacillus panacihumi W25 [AYJU]
779367
779292
-
Val
GAC
[ENA]
¡û
>W141240985
CAGW01000088
Bacillota
Brevibacillus massiliensis phR [CAGW]
1240
1165
-
Val
GAC
[ENA]
¡û
>W141288873
JAQG01000112
Bacillota
Brevibacillus borstelensis Jul-96 [JAQG]
947
1022
+
Val
GAC
[ENA]
¡û
>W141291588
JATL01000060
Bacillota
Brevibacillus agri 5·î2Æü [JATL]
69835
69760
-
Val
GAC
[ENA]
¡û
>WENV170593094
FUFK010842633
[FUFK] metagenome; unknown
299
224
-
Val
GAC
[ENA]
¢þ
>C181030684
CP018145
Bacillota
Brevibacillus formosus NF2 [CP018145]
3489798
3489723
-
Val
GAC
-
¡û
>C181082092
CP023474
Bacillota
Brevibacillus brevis X23 [CP023474]
4457525
4457450
-
Val
GAC
-
¡û
>C181188482
CP030117
Bacillota
Brevibacillus brevis DZQ7 [CP030117]
4276484
4276409
-
Val
GAC
-
¡û
>C191041880
CP026363
Bacillota
Brevibacillus agri DSM 6348 [CP026363]
2197314
2197389
+
Val
GAC
-
¡û
>C191207583
LR134338
Bacillota
Brevibacillus brevis NCTC2611 [LR134338]
1962298
1962373
+
Val
GAC
-
¡û
>W141808985
JPRB01000025
Bacillota
Brevibacillus borstelensis cifa_chp40 [JPRB]
515
440
-
Val
GAC
[ENA]
¡û
>W141819406
JQMH01000002
Bacillota
Brevibacillus thermoruber PM1 [JQMH]
519556
519481
-
Val
GAC
[ENA]
¡û
>W1910181751
BJMH01000026
Bacillota
Brevibacillus parabrevis NBRC 12334 [BJMH]
82447
82372
-
Val
GAC
[ENA]
¡û
>W1910183508
BJNU01000006
Bacillota
Brevibacillus brevis NBRC 15304 [BJNU]
88641
88716
+
Val
GAC
[ENA]
¡û
>W1910183891
BJOD01000011
Bacillota
Brevibacillus agri NBRC 15538 [BJOD]
61771
61696
-
Val
GAC
[ENA]
¡û
>W1910183963
BJOE01000056
Bacillota
Brevibacillus centrosporus NBRC 15540 [BJOE]
1920
1845
-
Val
GAC
[ENA]
¡û
>W1910184230
BJOK01000069
Bacillota
Brevibacillus borstelensis NBRC 15714 [BJOK]
229
304
+
Val
GAC
[ENA]
¡û
>W1910184258
BJOL01000018
Bacillota
Brevibacillus formosus NBRC 15716 [BJOL]
135849
135774
-
Val
GAC
[ENA]
¡û
>W1910184339
BJON01000026
Bacillota
Brevibacillus reuszeri NBRC 15719 [BJON]
4375
4300
-
Val
GAC
[ENA]
¡û
>C09101499
AP008955
Bacillota
Brevibacillus brevis NBRC 100599 [AP008955]
4246922
4246847
-
Val
GAC
[Ensembl]
¡û
>W1810001193
BEXF01000017
Bacillota
Brevibacillus reuszeri NIT02 [BEXF]
59329
59404
+
Val
GAC
[ENA]
¡û
>W1810389872
PXXZ01000009
Bacillota
Brevibacillus brevis NRRL NRS-604 [PXXZ]
134475
134400
-
Val
GAC
[ENA]
¡û
>W1810391249
PXZL01000001
Bacillota
Brevibacillus formosus NRRL NRS-863 [PXZL]
89364
89439
+
Val
GAC
[ENA]
¡û
>W1810391410
PXZM01000029
Bacillota
Brevibacillus fortis NRRL NRS-1210 [PXZM]
268588
268513
-
Val
GAC
[ENA]
¡û
>W1810391494
PXZN01000016
Bacillota
Brevibacillus sp. NRRL NRS-603 [PXZN]
89597
89672
+
Val
GAC
[ENA]
¡û
>W1810391638
PXZO01000051
Bacillota
Brevibacillus porteri NRRL B-41110 [PXZO]
37439
37514
+
Val
GAC
[ENA]
¡û
>W1810787412
QRDR01000011
Bacillota
Brevibacillus brevis DSM 30 [QRDR]
89574
89649
+
Val
GAC
[ENA]
¡û
>W1511500224
JXAV01000017
Bacillota
Brevibacillus borstelensis LChuR05 [JXAV]
92558
92633
+
Val
GAC
[ENA]
¡û
>W1511523198
JYCD01000039
Bacillota
Aeribacillus pallidus GS3372 [JYCD]
14231
14306
+
Val
GAC
[ENA]
¡û
>W1511629647
LDCN01000001
Bacillota
Brevibacillus formosus DSM 9885 [LDCN]
1077328
1077253
-
Val
GAC
[ENA]
¡û
>W1511645904
LDZV01000001
Bacillota
Brevibacillus brevis DZQ7 [LDZV]
3724633
3724558
-
Val
GAC
[ENA]
¡û
>W1511699572
LGIQ01000007
Bacillota
Brevibacillus reuszeri DSM 9887 [LGIQ]
106763
106838
+
Val
GAC
[ENA]
¡û
>W1511700083
LGJF01000001
Bacillota
Bacillus sp. FJAT-27238 [LGJF]
612527
612602
+
Val
GAC
[ENA]
¡û
>W121084995
AKIX01000013
Bacillota
Brevibacillus sp. BC25 [AKIX]
103890
103815
-
Val
GAC
[ENA]
¡û
>W121086599
AKKB01000103
Bacillota
Brevibacillus sp. CF112 [AKKB]
191
116
-
Val
GAC
[ENA]
¡û
>W1610650547
LJJB01000013
Bacillota
Brevibacillus choshinensis [LJJB]
97045
97120
+
Val
GAC
[ENA]
¡û
>W1610739112
LMPN01000001
Bacillota
Brevibacillus sp. Leaf182 [LMPN]
89440
89515
+
Val
GAC
[ENA]
¡û
>W1610858189
LQQV01000066
Bacillota
Brevibacillus parabrevis [LQQV]
77489
77564
+
Val
GAC
[ENA]
¡û
>W1610978474
LVYG01000025
Bacillota
Brevibacillus brevis [LVYG]
23685
23610
-
Val
GAC
[ENA]
¡û
>W1610996258
LXGJ01000099
Bacillota
Brevibacillus sp. WF146 [LXGJ]
3249
3174
-
Val
GAC
[ENA]
¡û
>W1710081136
BDFB01000013
Bacillota
Brevibacillus brevis [BDFB]
158040
157965
-
Val
GAC
[ENA]
¡û
>W1710566138
FORT01000004
Bacillota
Brevibacillus centrosporus OK042 [FORT]
107276
107351
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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