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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463136 (126 seq.)
>W1710786932
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
3989697
3989772
+
Arg
ACG
[ENA]
¡û
>W1710786933
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
3989804
3989879
+
Arg
ACG
[ENA]
¡û
>W1710860297
LMCT01000023
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
114075
114000
-
Arg
ACG
[ENA]
¡û
>W1710860298
LMCT01000023
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
113960
113887
-
Arg
ACG
[ENA]
¡û
>W1711183457
LWLA01000049
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
47558
47483
-
Arg
ACG
[ENA]
¡û
>W1711183458
LWLA01000049
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
47351
47276
-
Arg
ACG
[ENA]
¡û
>W1711627034
MPLE01000004
Actinomycetota
Streptomyces viridifaciens [MPLE]
3739889
3739964
+
Arg
ACG
[ENA]
¡û
>C171109491
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
2815279
2815354
+
Arg
ACG
-
¡û
>C171109492
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
2815386
2815461
+
Arg
ACG
-
¡û
>WENV180016674
FSVS01000694
[FSVS] metagenome; soil
6840
6767
-
Arg
ACG
[ENA]
¢þ
>WENV180023327
FTHV01000202
[FTHV] metagenome; soil
2981
2906
-
Arg
ACG
[ENA]
¢þ
>WENV180023367
FTHV01001690
[FTHV] metagenome; soil
1040
1114
+
Arg
ACG
[ENA]
¢þ
>WENV180023368
FTHV01001690
[FTHV] metagenome; soil
1247
1322
+
Arg
ACG
[ENA]
¢þ
>WENV180023457
FTHY01000200
[FTHY] metagenome; soil
2981
2906
-
Arg
ACG
[ENA]
¢þ
>WENV180023495
FTHY01001711
[FTHY] metagenome; soil
1040
1114
+
Arg
ACG
[ENA]
¢þ
>WENV180023496
FTHY01001711
[FTHY] metagenome; soil
1247
1322
+
Arg
ACG
[ENA]
¢þ
>WENV180024789
FTIJ01017500
[FTIJ] metagenome; soil
2225
2151
-
Arg
ACG
[ENA]
¢þ
>WENV180024790
FTIJ01017500
[FTIJ] metagenome; soil
2018
1943
-
Arg
ACG
[ENA]
¢þ
>WENV180028524
FTJE01001124
[FTJE] metagenome; soil
556
482
-
Arg
ACG
[ENA]
¢þ
>WENV180028573
FTJE01039622
[FTJE] metagenome; soil
345
418
+
Arg
ACG
[ENA]
¢þ
>WENV180033248
FTKF01131746
[FTKF] metagenome; soil
94
20
-
Arg
ACG
[ENA]
¢þ
>WENV180033618
FTKL01000485
[FTKL] metagenome; soil
4704
4631
-
Arg
ACG
[ENA]
¢þ
>WENV180033794
FTKL01216893
[FTKL] metagenome; soil
75
1
-
Arg
ACG
[ENA]
¢þ
>WENV180035217
FTKT01010746
[FTKT] metagenome; soil
3100
3174
+
Arg
ACG
[ENA]
¢þ
>WENV180035218
FTKT01010746
[FTKT] metagenome; soil
3296
3370
+
Arg
ACG
[ENA]
¢þ
>W141282696
JAIY01000004
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
451524
451449
-
Arg
ACG
[ENA]
¡û
>W141282697
JAIY01000004
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
451417
451342
-
Arg
ACG
[ENA]
¡û
>W141282767
JAIZ01000392
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
2334
2409
+
Arg
ACG
[ENA]
¡û
>WENV170565598
FJVZ01000851
[FJVZ] metagenome; soil
2131
2204
+
Arg
ACG
[ENA]
¢þ
>WENV170565599
FJVZ01000851
[FJVZ] metagenome; soil
2338
2413
+
Arg
ACG
[ENA]
¢þ
>C181116320
CP025394
Actinomycetota
Kitasatospora sp. MMS16-BH015 [CP025394]
4195849
4195776
-
Arg
ACG
-
¡û
>W141726644
JNBY01000093
Actinomycetota
Kitasatospora cheerisanensis KCTC 2395 [JNBY]
54453
54378
-
Arg
ACG
[ENA]
¡û
>W141726645
JNBY01000093
Actinomycetota
Kitasatospora cheerisanensis KCTC 2395 [JNBY]
54342
54267
-
Arg
ACG
[ENA]
¡û
>W141755578
JNWQ01000060
Actinomycetota
Streptomyces novaecaesareae [JNWQ]
31752
31677
-
Arg
ACG
[ENA]
¡û
>W141755579
JNWQ01000060
Actinomycetota
Streptomyces novaecaesareae [JNWQ]
31645
31570
-
Arg
ACG
[ENA]
¡û
>W141755602
JNWR01000001
Actinomycetota
Kitasatospora aureofaciens [JNWR]
247461
247536
+
Arg
ACG
[ENA]
¡û
>W141755603
JNWR01000001
Actinomycetota
Kitasatospora aureofaciens [JNWR]
247568
247643
+
Arg
ACG
[ENA]
¡û
>W141756075
JNWY01000028
Actinomycetota
Kitasatospora setae [JNWY]
43502
43427
-
Arg
ACG
[ENA]
¡û
>W141756076
JNWY01000028
Actinomycetota
Kitasatospora setae [JNWY]
43391
43316
-
Arg
ACG
[ENA]
¡û
>W141756128
JNWZ01000015
Actinomycetota
Kitasatospora phosalacinea [JNWZ]
221915
221990
+
Arg
ACG
[ENA]
¡û
>W141756129
JNWZ01000015
Actinomycetota
Kitasatospora phosalacinea [JNWZ]
222025
222100
+
Arg
ACG
[ENA]
¡û
>W141757810
JNYE01000002
Actinomycetota
Kitasatospora phosalacinea [JNYE]
47842
47767
-
Arg
ACG
[ENA]
¡û
>W141757811
JNYE01000002
Actinomycetota
Kitasatospora phosalacinea [JNYE]
47732
47657
-
Arg
ACG
[ENA]
¡û
>W141759696
JNZN01001691
Actinomycetota
Streptomyces pyridomyceticus [JNZN]
2859
2784
-
Arg
ACG
[ENA]
¡û
>W141759697
JNZN01001691
Actinomycetota
Streptomyces pyridomyceticus [JNZN]
2752
2677
-
Arg
ACG
[ENA]
¡û
>W141760883
JOAI01000033
Actinomycetota
Streptomyces sp. NRRL B-24484 [JOAI]
52948
53023
+
Arg
ACG
[ENA]
¡û
>W141760884
JOAI01000033
Actinomycetota
Streptomyces sp. NRRL B-24484 [JOAI]
53060
53135
+
Arg
ACG
[ENA]
¡û
>W141761751
JOAY01000006
Actinomycetota
Streptomyces pyridomyceticus [JOAY]
96153
96228
+
Arg
ACG
[ENA]
¡û
>W141761752
JOAY01000006
Actinomycetota
Streptomyces pyridomyceticus [JOAY]
96260
96335
+
Arg
ACG
[ENA]
¡û
>W141763680
JOCF01000010
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
60202
60277
+
Arg
ACG
[ENA]
¡û
>W141763681
JOCF01000010
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
60310
60385
+
Arg
ACG
[ENA]
¡û
>W141765992
JODS01000003
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
401499
401574
+
Arg
ACG
[ENA]
¡û
>W141765993
JODS01000003
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
401606
401681
+
Arg
ACG
[ENA]
¡û
>W141766922
JOEH01000009
Actinomycetota
Streptacidiphilus jeojiense [JOEH]
164440
164513
+
Arg
ACG
[ENA]
¡û
>W141767517
JOER01000011
Actinomycetota
Kitasatospora aureofaciens [JOER]
90645
90570
-
Arg
ACG
[ENA]
¡û
>W141767518
JOER01000011
Actinomycetota
Kitasatospora aureofaciens [JOER]
90538
90463
-
Arg
ACG
[ENA]
¡û
>W141768733
JOFK01000009
Actinomycetota
Kitasatospora aureofaciens avellaneus [JOFK]
204361
204436
+
Arg
ACG
[ENA]
¡û
>W141768734
JOFK01000009
Actinomycetota
Kitasatospora aureofaciens avellaneus [JOFK]
204468
204543
+
Arg
ACG
[ENA]
¡û
>W141770032
JOGF01000457
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
1903
1978
+
Arg
ACG
[ENA]
¡û
>W141770033
JOGF01000457
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
2010
2085
+
Arg
ACG
[ENA]
¡û
>W141770068
JOGG01000001
Actinomycetota
Streptomyces sp. NRRL B-5680 [JOGG]
292227
292302
+
Arg
ACG
[ENA]
¡û
>W141770069
JOGG01000001
Actinomycetota
Streptomyces sp. NRRL B-5680 [JOGG]
292334
292409
+
Arg
ACG
[ENA]
¡û
>W141770143
JOGH01000002
Actinomycetota
Kitasatospora sp. NRRL B-11411 [JOGH]
20005
19930
-
Arg
ACG
[ENA]
¡û
>W141770144
JOGH01000002
Actinomycetota
Kitasatospora sp. NRRL B-11411 [JOGH]
19895
19820
-
Arg
ACG
[ENA]
¡û
>W141771948
JOHN01000015
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
61313
61238
-
Arg
ACG
[ENA]
¡û
>W141771949
JOHN01000015
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
61206
61131
-
Arg
ACG
[ENA]
¡û
>W141772011
JOHO01000004
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
58186
58111
-
Arg
ACG
[ENA]
¡û
>W141772012
JOHO01000004
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
58079
58004
-
Arg
ACG
[ENA]
¡û
>W141774343
JOJA01000002
Actinomycetota
Streptomyces sp. NRRL S-384 [JOJA]
22096
22021
-
Arg
ACG
[ENA]
¡û
>W141774344
JOJA01000002
Actinomycetota
Streptomyces sp. NRRL S-384 [JOJA]
21986
21911
-
Arg
ACG
[ENA]
¡û
>W141818489
JQLN01000005
Actinomycetota
Kitasatospora mediocidica KCTC 9733 [JQLN]
1688321
1688396
+
Arg
ACG
[ENA]
¡û
>W141818490
JQLN01000005
Actinomycetota
Kitasatospora mediocidica KCTC 9733 [JQLN]
1688515
1688590
+
Arg
ACG
[ENA]
¡û
>W141819759
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
5099463
5099536
+
Arg
ACG
[ENA]
¡û
>W141819760
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
5100783
5100856
+
Arg
ACG
[ENA]
¡û
>W141819968
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
2982777
2982852
+
Arg
ACG
[ENA]
¡û
>W141819969
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
2982890
2982965
+
Arg
ACG
[ENA]
¡û
>W1911083743
NNBO01000016
Actinomycetota
Kitasatospora sp. CB02891 [NNBO]
110726
110799
+
Arg
ACG
[ENA]
¡û
>W1911083744
NNBO01000016
Actinomycetota
Kitasatospora sp. CB02891 [NNBO]
110836
110911
+
Arg
ACG
[ENA]
¡û
>W1911243736
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
4006723
4006798
+
Arg
ACG
[ENA]
¡û
>W1911243737
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
4006833
4006908
+
Arg
ACG
[ENA]
¡û
>W1911494803
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
3817412
3817487
+
Arg
ACG
[ENA]
¡û
>W1911494804
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
3817519
3817594
+
Arg
ACG
[ENA]
¡û
>W1810073032
PEFQ01000001
Actinomycetota
Streptomyces sp. 1 [PEFQ]
3776383
3776308
-
Arg
ACG
[ENA]
¡û
>W1810073033
PEFQ01000001
Actinomycetota
Streptomyces sp. 1 [PEFQ]
3776273
3776199
-
Arg
ACG
[ENA]
¡û
>W1810120744
PHTW01000001
Actinomycetota
Streptomyces sp. 4121.5 [PHTW]
4227161
4227236
+
Arg
ACG
[ENA]
¡û
>W1810120745
PHTW01000001
Actinomycetota
Streptomyces sp. 4121.5 [PHTW]
4227271
4227346
+
Arg
ACG
[ENA]
¡û
>W1810121513
PHUK01000001
Actinomycetota
Kitasatospora sp. OK780 [PHUK]
4167921
4167996
+
Arg
ACG
[ENA]
¡û
>W1810121514
PHUK01000001
Actinomycetota
Kitasatospora sp. OK780 [PHUK]
4168033
4168108
+
Arg
ACG
[ENA]
¡û
>W1810172997
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
3695198
3695273
+
Arg
ACG
[ENA]
¡û
>W1810172998
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
3695305
3695380
+
Arg
ACG
[ENA]
¡û
>W1810394697
PYBW01000039
Actinomycetota
Streptomyces tateyamensis ATCC 21389 [PYBW]
41742
41817
+
Arg
ACG
[ENA]
¡û
>W1810394698
PYBW01000039
Actinomycetota
Streptomyces tateyamensis ATCC 21389 [PYBW]
41851
41926
+
Arg
ACG
[ENA]
¡û
>W1810693996
QLLT01000009
Actinomycetota
Kitasatospora sp. SolWspMP-SS2h [QLLT]
20
95
+
Arg
ACG
[ENA]
¡û
>W1810694036
QLLT01000039
Actinomycetota
Kitasatospora sp. SolWspMP-SS2h [QLLT]
57212
57287
+
Arg
ACG
[ENA]
¡û
>W1810907979
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
5530063
5529990
-
Arg
ACG
[ENA]
¡û
>W1810907980
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
5529956
5529881
-
Arg
ACG
[ENA]
¡û
>W1510013954
BBPL01000008
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
220758
220685
-
Arg
ACG
[ENA]
¡û
>W1510013955
BBPL01000008
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
219438
219365
-
Arg
ACG
[ENA]
¡û
>W1510014048
BBPM01000081
Actinomycetota
Streptacidiphilus carbonis NBRC 100919 [BBPM]
25908
25835
-
Arg
ACG
[ENA]
¡û
>C11111774
AP010968
Actinomycetota
Kitasatospora setae KM-6054 [AP010968]
4161050
4160975
-
Arg
ACG
[Ensembl]
¡û
>C11111775
AP010968
Actinomycetota
Kitasatospora setae KM-6054 [AP010968]
4160939
4160864
-
Arg
ACG
[Ensembl]
¡û
>W1511311667
JPRF01000424
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
2123
2198
+
Arg
ACG
[ENA]
¡û
>W1511311668
JPRF01000424
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
2230
2305
+
Arg
ACG
[ENA]
¡û
>W1511519318
JXZB01000004
Actinomycetota
Kitasatospora griseola MF730-N6 [JXZB]
2146044
2145971
-
Arg
ACG
[ENA]
¡û
>W1511519319
JXZB01000004
Actinomycetota
Kitasatospora griseola MF730-N6 [JXZB]
2145934
2145859
-
Arg
ACG
[ENA]
¡û
>W1511529073
JYJF01000054
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
12799
12874
+
Arg
ACG
[ENA]
¡û
>W1511529074
JYJF01000054
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
12911
12986
+
Arg
ACG
[ENA]
¡û
>W1511545212
JZKG01000240
Actinomycetota
Streptomyces rubellomurinus subsp. indigoferus ATCC 31304 [JZKG]
3063
2988
-
Arg
ACG
[ENA]
¡û
>W1511545213
JZKG01000240
Actinomycetota
Streptomyces rubellomurinus subsp. indigoferus ATCC 31304 [JZKG]
2955
2880
-
Arg
ACG
[ENA]
¡û
>W1511545254
JZKH01000038
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
69524
69449
-
Arg
ACG
[ENA]
¡û
>W1511545255
JZKH01000038
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
69416
69341
-
Arg
ACG
[ENA]
¡û
>W1511555626
JZWY01000092
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
22782
22707
-
Arg
ACG
[ENA]
¡û
>W1511555627
JZWY01000092
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
22675
22600
-
Arg
ACG
[ENA]
¡û
>W1511590476
LBHA01000473
Actinomycetota
Kitasatospora aureofaciens NRRL 2209 [LBHA]
2199
2124
-
Arg
ACG
[ENA]
¡û
>W1511590477
LBHA01000473
Actinomycetota
Kitasatospora aureofaciens NRRL 2209 [LBHA]
2092
2017
-
Arg
ACG
[ENA]
¡û
>W1511687937
LFVW01000814
Actinomycetota
Kitasatospora sp. MY 5-36 [LFVW]
2272
2197
-
Arg
ACG
[ENA]
¡û
>W1511696776
LGDO01000042
Actinomycetota
Streptomyces sp. XY431 [LGDO]
17456
17531
+
Arg
ACG
[ENA]
¡û
>W1511696777
LGDO01000042
Actinomycetota
Streptomyces sp. XY431 [LGDO]
17563
17638
+
Arg
ACG
[ENA]
¡û
>W1610650787
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
3989697
3989772
+
Arg
ACG
[ENA]
¡û
>W1610650788
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
3989804
3989879
+
Arg
ACG
[ENA]
¡û
>W1610722643
LMCT01000023
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
114075
114000
-
Arg
ACG
[ENA]
¡û
>W1610722644
LMCT01000023
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
113960
113887
-
Arg
ACG
[ENA]
¡û
>W1710765831
LIPD01000003
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
504918
504845
-
Arg
ACG
[ENA]
¡û
>W1710765832
LIPD01000003
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
504811
504736
-
Arg
ACG
[ENA]
¡û
>W1710769493
LISX01000001
Actinomycetota
Kitasatospora sp. CB01950 [LISX]
241015
241090
+
Arg
ACG
[ENA]
¡û
>W1710769494
LISX01000001
Actinomycetota
Kitasatospora sp. CB01950 [LISX]
241125
241200
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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